RNA id: XM_043261946.1


Basic Information

Item Value
RNA id XM_043261946.1
length 8879
RNA type mRNA
GC content 0.47
exon number 22
gene id grik5
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13910503 ~ 13971229 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagcgagcgcaTATGAGGAAGGGAGGGGGTTTGGAGTCAGAGTGAATGCAGCTTGCACTGCTGTGCTTTGGAATTACAGCTATGAACATTGTCAGGGActtgaaaaagaaaggaaagcaAAGGAGAAAAAGGACAGAGGGTGGAAGAGAAACGTTACAGAGCCTCTTGATGCTCGATgctgaagagtgtgtgtgagaagacAGAAGGAAACGAGGAGGCGCACCGGAGGAGCTTCACACGATCCCCTCATCTTCAGTTCCTGAGCAGATCGGCCTGTTGTCCCCCATCACCGGGGTCGTCATTGGAACTGCGTCTCACCTGTGCAGTGCTCCAAACAGGCTCTGCTCAGAATGGCTCCACAGAGCAGGGATTGTGTTAACCTGAGGAGGACCACTCTCACACAGGGGTCTTAAGCAACGCAAGGCCACGAGACTCCGCTGAGGAAATTCTCAGTGCGGCGACAGATGTGACGCTCCTGCGGCTCTGTTTGCTTCCACGGACCTCGGAGCAGCCATAACTCGATCCTCCTCCATCCTAGAGGTGCCATTCCGAGGATAGAGGGAGTGTCTGTGCCAAAACTCATTCCTGAACTCCTGAAGGGAGGAGCCGTGGGAATTGGAGGCATAGCTGGATTGATGAGTGTGCTGGAGAACAGAGCGTGAGCCGCTCTCCACATCTCCACCCGAGCGCTGGGCTCCTTAATCAGTTCATCCTCCCAGACACTTGAGCTCAACTTATTCTGGAGAATTTTGGCTCTGAGACTTCAAATCTTCCACTATATGTTTTTAATCTATTCCAGTTTCTTAGCTCAAGTCAGTGCTCCCCTTCATCAAATGTGGCAGGTGGGCCAGAGAAACGATTCTCTGTGAAACTAAAAGCAATAACGTGTAAGGTAGAGTGAGGTGGCAGTGGAAAGCAGGGTAAAAGTGCTGactgggtttgagtgtttatgtgcgTGTATGCAAGGCCCGTGCAGCAATGGATGAGGGTTTGTGCCGAGTGCTGACAGCAACGGGCAGCTAGACGCCAATGTATATCCCAAGCCGTTCTGTGTGCGCAAGCGAGTGCGCTAGTGTGCGAATGTGCATGTGGGAGCATGTGATTGTCTTTTGGAGTGCAGAATTCTGAGAATTGGCCATTATTACCGCTCCCTCCTATTTTTGTGTTGGAGCCGGGAGGGTCAACATTAACTGCGCGCTCGAGAGAGAGGGACGattgcagcaaaaaaaaataaaaataacagtgacACTTCAGTTTTCTCTCACCGTATTTTTGGTGCCCATTGGTGGGATTCTTTGTCCTCCGAGTGCTtgagctttgtaaaaaaaaaactacttttgtcCCATCAAAATGGATTATTATAAGAATCACAGCTTGTGAGGGGCTCTCAGATGGATCATTTCTAGCTGGAATACCTTCTCCTTTGAGACTCTCCACACCACTCCATTTCTGTGACTTTCAACCTGTCATCCTAGAAGACGTGTTGCGATTCCCCGGAGGACTGCGTTCACTTGTTACCACAGAAATCCATGGCATCCTGTTCCTGACAAGGTCCGCTTCATTCTGGGGTGCTATAGGCAGCAGAAGGCATCTCCATGAGGAGCGGTAGAAGATGCCGGAACTGCCAGCGCTCCTGCTGTCGATTTACTTCCGCTTCCTGTTAGTCACCGTGGTTACCATGCCGCCTTCTTCCCTGAGCCAGACCCCCATTCTGTCATCCGTACGGATGGCGGCAATTTTGGATGACAGCTCTGTCTGTGGGCGTGGGGAGCGGTTAGCTTTAGCGTTAGCACGCGAGAACATCAACAGTGTGATGGAGGGCCCGGCTCGCGCTCGCGTGGAGGTCGACATATTTGAACTCCAGAAAGACTCTCAGTATGAGACTACAGATACTATGTGCCAGATTCTACCGAAGGGCGTGGTCTCCGTGATTGGCCCCGCCTCCAGCCCTGCCTCTGGCTCCATAGTCAGTCACATCTGTGGGGAAAAGGAGATTCCGCATGTCAAAATCGGTCCGGAAGAGACCCCGCGTCTCCCTTACCTGCGCTTTGCGTCTGTGACTCTGTATCCTAGCAATGAGGATCTCAGCCTTGCCATCGGAGCCATCCTACGCTCCTTCAGCTACCCATCGGCTAGTCTGGTCTGCGCTAAGGCCGAATGTCTGCTGAGACTGGAGGAGCTGATAAGGCGATTTCTGATCTCGCGAGAGACGCTGTCAATCAGGATGCTGGATGACAACCTTGACCCCACGCCTTTACTGAAAGAGATTCGCGATGACAAAATAGCTACAATAATTATTGATGCTAATGCATCTATATCTTACCTTATACTGAAAAAGGCATCAGAGTTGGGAATGACATCAGCGTTTTACAAGTACATCCTCACAACTATGgactTCCCGCTGCTATGGTTGGACGATATAGTGGATGAGCAGTCAAACATTGTGGGCTTCTCAATGTTTAACACCACCCACCCATTTTACCTGGAGTTTATCAGGAGCCTTAACCTTTCTTGGAGAGAGGGCTGTGACATTAACCCATACCCCGGACCAGCGttgTCGTCGGCCCTGCTGTTTGATGCGGTCCATGTGGTGGTGAGTGCAGTGCAAGAACTCAACCGGAGTCAGGAGATTGGCGTCAAACCTCTCAGCTGCACCTCTCCTCAGATCTGGCAACACGGAACCAGCCTCATGAACTACCTGCGTATgGTGGAGTATGATGGTTTGACAGGTCGAGTTGAGTTCAACAGTAAAGGCCAGAGGACCAATTACACCCTCCACATCCTGGAGAAGCACAGGGGAGGCCACAAAGAGATTGGGATCTGGTTCTCTAATAACACTCTGCTGATGAACTCCACCAGTCTGGATATCAACGTGTCTGAGACTCTGGCTAACAAGAGCCTCATCATCACCACTATACTGGAGAACCCGTACGTGATGAGAAAGGTGAATTACCAGGAGTTTGAGGGGAACGAGCAGTATGAAGGTTTTTGCGTGGACATGTTGAGGGAGCTGGCTGATATCCTAAAGTTCACTTTTCGCATCAAACTGGTGGACGATGGCCTGTACGGAGCACCTGAACCCAACGGCTCATGGACAGGAATGGTGGGAGAGCTGATCAACAGGAAAGCTGATTTGGCTGTTGCAGCTTTTACCATCACATCCGAGAGAGAGAAGGTCATTGACTTCTCTAAACCCTTTATGACGCTGGGCATCAGTATTCTCTACAGAGTCCATATAGGCAGGAAGCCAGGTTATTTCTCCTTCCTGGATCCTTTCTCACCGGCTGTTTGGCTCTTCATGCTGCTGGCTTACCTCGCTGTCAGCtgtgtgctttttctttctgctagGTTGAGTCCGTATGAATGGTATAACCCTCACCCGTGTCTGCGTGAGCGCAGAGACCTGTTGGAAAATCAGTACACACTAGGAAACAGCCTGTGGTTTCCTGTGGGGGGCTTCATGCAGCAGGGGTCAGAGATCATGCCTCGGGCCCTCTCTACACGCTGCGTCAGTGGGGTCTgGTGGGCTTTCACTCTCATAATAATCTCCTCATACACTGCGAACCTGGCTGCGTTTCTCACAGTGCAGAGAATGGAAGTGCCAATCGAATCGCCCGATGACCTGGCCGATCAAACCAATATCCAGTACGGCACCATTCATGGAGGAAGCACCATGACCTTTTTTATGAACTCACGTTATCAGACGTATCAGCGGATGTGGAACTACATGTATTCTAAGCAGCCCAGTGTTTTTGTGAAGAGCACAGAGGAGGGCATCGCACGAGTCGTAAACTCTAAATACGCCTTCCTGCTTGAGAGCACCATGAACGAGTACCACCGCAGCCTCAACTGCAACCTCACCCAGATCGGAGGCCTTCTGGACACCAAGGGTTATGGAATCGGCATGCCTCTCGGTTCTCCTTTCAGAGATGAGATAAGTCTGGCAGTTCTGCAGTTGCAGGAGAATAACAGGTTGGAGATCCTGAAGAGAAGATGGTGGGAGGGAGGGCAGTGTCCCAAAGAAGAAGACCACCGCGCCAAAGGTCTTGGGATGGAGAACATTGGCGGTATATTTGTGGTGTTAATCTGTGGCCTGATTATTGCTGTGTTTGTGGCTGTGATGGAGTTTGTGTGGTCAACACGTCGATCAGCTGAAACAGACGAGGTACGGCCTCTCTCCTGCGACCGCCAATATCACAGTCACACTACAGTGTCTGTGTGTCAGGAGATGCTGACTGAGTTCCGTAATGCCGTTTCCTGCAAGAAAAGTTCTCGTCTTCGCCGCCGCCGTCCCCTGTCCAGCTCTCTGGCCCTTCGACACCCCACCCGCATCACTTTAGGGGCCCCCCGGCCCCTGCGCCTTGTCCGAGAGATGCGCCTTAGCAACGGAAAGCTCTACAGCGGTACTGGACCCCTGACAGGAAGTTCAGGACCAGGAGGAGGCCCCTCAGACATGGGCCCTGGCCCCCAGCGACTCCTGGAGGACCCGTTAGGTGCCAATAGCACCCCTACAGTGGCCCTGGGTCCCCCTGCAGTGACAGTGCCTCTGCCTCGGGGCTGCACTCACGTGCGCATTTGCCAGGAGTGTCGACGTATCCAGAGTCTCCGCACAACCTCCTGCACACGTATCCCTCCCTCCTCGGCACCTCTGCCTCGCCTGGCCCCGCCCCCTCCACACTCATCTTCCAATACAGACAGCGAAGGTGGGGGCGGGCCGAGCCCATGCAGGATAGGACACTCCCCGCCAGCTAAAGGGTGCACTTTACCACCACCTCAGTCTAGCAACAACACAGATCTAATGGGAGAGCAGAAATGAGAACAGAGAGACTGAGAAAAGGGGGAGACAGGAATGTgaacatttttgcaatattcGCCCTCTTGTTAAAAATCACAGACAAATGCGCTTTCCATCTTTTATTTGGTACGAGAGAATTATCCTCTTCTTTTGGATAGCCGTGTGCCACATCAATGATTCTTTTGTACTACTAAACAATGTACTATAAAATTGACTGTGTCTGAAGCAACCTTAAAACGCGATGGTAAAGATTTAAGACTGTCGGTCTGAGAATTTAGAAATGCAGCAGGCAGCACAGAGATATTAAAGAGATATTAAACTTCCCTGTGATTCTGATCTTCAGGCAGCACACAGACTTCTGCTTGCGATCAGAGACAGATGGAGATACAGACTCTCCTTTCCTTCCCTGACTGAACTCGATCTTTATATTACGATAGAGTTCACACAGGGGTATTAGCACAGAGAAGCTCTCTTCTGGACGTCATTCTCTCAATGATACCATACAGATCAGAGCCAGACAGCGACAGAATGACAGCACACATGTTGATGGAGGACAATGATGCTATGAAAAACAatgttgttaattaaaaagataTTCTAAACAGATATTCTTACTTTTCTGTACTatacttatttttaagtttGCTGTCTGTGTAATTTAATTCTGGGGTTGTGATGTCTGaattggaaattaaaaatagagATACTTTATTGATACCGAGAAGATTGTCTCTGACTGAATTCTGACTGAATGTTATTGGAAATGAGGAGCTGTGTGTTCATTAAATCGTGAGTTTTGGTTTGTCTGCAAGAACTTGAGTCCATAAACAGTGCTGGAAATCACATCACATACCTCAGCCTAAATTTTCACACGTGTGCTTGTCTACGTTCACCACAGATAAGAGATTTTAGAAACAGAAAGTCAGACATCTGATGTTGTGTTTCAGCTTAAAGATTTTTCTCACACATCAGTGCTGAAAATGACTAATGGAAGAAAGAAGGAAATAACAGACGTTTCAAAATGGCAAATTGAATATTTCTATACAAATGTGTGTTGCATATAAAATGCTggatatttacattaataatacatcTTAAGGTGCAGAggatatttgaaatgaatgtatCATTGGGTCAATTTTAGGGGTTGAGGAGCTTTTCCAACAAGATGATCTGTATTAAAACTATAGACAAAGAAAtcctttgaaatatatatatatatatatatatattttattgtcaaCCTTTATTCTGTGTATAGACTGGATTGTTTTTCTGCATACAATTTTGTTATTCTAAATAAGATCACTCAAAGCAAACATCCATccctttttaaaagtgtgttaaAAGAGAGCTGCCTGTTGTTAAGCCGTGTATCCAGTTTAGGTGTGTTCTCTCTTAATTTGTATACTCTTTGaataacagctttttaaatCTGTTGGTGAAGAAATATTCAACATCTCTACTCATCAAATTAGGCTGCTTACATTATCAATGCAGCTGGAGACGTTTTAACCTATATGTATGTAATTTGCGTCTATGATAATTGGTGAATATACCAAAAGGGAGCCTAACCTCTCCTGCCAGGTTTCTTTTCTCAACACTACTCTGCACAGAAAGGGAACGCTCAATGGTTCTTCTTTGTCGAGTGGATTGCACGCTGTGTGTTGTTAACTTCCATTTCAGCAgactaaaatagctttttttgctAAAAGAGCAGCTCACAGTTGGAACGTCTTTTTCAAGATGTGTCACAAGATGCCCTTTCACTCATGTTTCTGGATGCACTCGACCAGACTCTATTTCCTGCAAAGGGGTGGAGTGCCGTGCCTCTCCCTAGATCTAGGGCTCCCCCTGGTAAGAGTAGCTGGGAGAGCACTACTTCTAGCAGTAGCTGGACTGGTCTTACAGTGACAGTGAATAATAAAGTGTCCCCCCTTGCTGCCCTACCATGGGTACATCAGTGGTTCTGTTGGTGCTGCTGGTTTGGGCTTTGGGAACTTGGGTGAAGCTTCCCAGTCTGTCTCGTTGACTATTTTGAACCATCTGACTAGGCTATGATCAATTTGGATGGCGTCCTCCCAAGTTCAGAGGTGTCCTATTCACTTCAGTAAAGTCTGTGGATGCCACTCTCTTGCGAGCAGAGTTCGCAGTCCTACTGGCGATAGGGGATCTTCAGGTGTATCGGGATTGTTTTGCAGCGATTGACCTGAAGGATGCACAATTTCAATTCTTCTGcaccacaggccattcctgcaGTTTGCGCTCGAAAGACAGACATATCAGTACAAGGTTCTACCCTTTGGGCTCTCCCTGTCACCCCATGTCTTTACGAAGGTTACTGAGGTGGCCCTTGTTTTGTTAAGAGAAAAGGGCATTCACATTCAACTATGTGGATGTCTGGCTAATTCAAACTCAGTCTCAGTTAGGCGAATACAGGGACCTGGTGTTAGAACACCTCAGCCTCTGTGCAAACACGTGCTGGCCCACTTAGACATCACAGTGACTGTTGCATACATCAACCGAAAAGGTGGTCTGGGCTCGTGTCTAAGAAGTATGGTCTCCTCCTGGGTATTGGCTCGTGGTGCCTCACTGTCAGCTGCGGGCTAGGCAACTCCTAACACATTTGCTAGGTTCTATAGCCTGCATGTGGAGCTGGTATCCCCCTGTGTTCACCTCAAATGGGTAAAAGCGCTGAGAGGCCTGGTTTCAGGTCGGCTTGTTTAACTTCTCCAGAgtgtccatacagtagaccctgttgagcttctCCGTCCCCTCAGCAGCCGGACGTGGTGGAGTGTCTGGCACCAGGTCTCACTCAACGAATTCTTGAAAACTGGGGCCCATATGTAGTTACCTTACAGGATGCCATATGTGTGATTCCATTGTACAGTCTTAGAACCGTGTTCCCCGGCAGGTACTCCTTATCACGTCTTATTGCCATAGGTGCTGTAATGCCGCTGAGAGTCTGGGTCACCTGCTCGGCTCCTCAGTGAAAAATTTGGATATGTGCTGCACCAGCTgcttatttatactttatattgcAACTTGATGCAATCAGCTCAAGCCAATGTGCATTGATTTGttgtagattggtctctcgaagcaaTATCACGATTCCATGGTCACCAACATCTCCATTTCCTTCTTCAAGGAACGAGGTTTACATACAAAATCGAGATAATACCTCAttagcaaatgtttttatgggCTGCGATACATAAGCCTTCCACTATATTGTTGCGGCCTTGACTTGACGTCATGCATCATAGTAATCACTGAATACTTgaaaaattgaattgaattgaattttattaacatttaatcgCCATTCTCTCATTTTTACCTCAAAATTTTGGGGAAGCTGCAGTACAGCCCTCCCTTGATGATCCACCACTGGTTTTATCATGACCAATATCGTCAAAAGTAAATGACCACAccttttttaattgcaaaatggTTTTGGTCTGTTGAGGAAGTACAGGCGTTCCTCTTGTTGATAGCCAAGAAGCAGATCCAGCAAGAGCTTTATGGGGCTGCGCAgattgaaaaacattttcaggacATCGCTTATCTCTTGGCAGCACATGTGTGTAATTCTACCCACTTAAAGCGATAGTGGAAACACAAACCAAGCCGAGCCATGCCATACCATGCAGTGGAAAAATGCCAAAAGATGATAATTATCTTAACAATCAGGTCAGTCCTGCTTCCTCAAGGAAGTTTATCATTATATCATTCTATCGCTTATTTATCAATTTCAGTGTGGTACTCGTGAACAGTGATAGATTGTTAATGTGCATTGTTAAAGAAGCACACACTGCAGAGAGGAACTGCACGGACAATGCGGAAAGTACCAAATTGCATCTTGGTACAGAAATGTTGTCTTTACTTGAGGTGTGCTATTTATATGCAGAAACTAACTTGGCTTGCTCATAAGATCCAATGGTTTAGAGTTGTGGGGAATGTGCATAAGCACGCCAAAGTTAGACATAGAAACAGTGCCATTGAAACTTTAATGTGATAATTCACTTTTGCATCTActtgaacaaataaacaaatacacaatataatatcA

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165979 lncRNA downstream 767 13909324 ~ 13909736 (-) True G112449
TU165978 lncRNA downstream 8890 13901137 ~ 13901613 (-) True G112448
TU165977 lncRNA downstream 9427 13900864 ~ 13901076 (-) True G112447
TU165937 lncRNA downstream 124050 13785015 ~ 13786453 (-) True G112426
XR_006252773.1 lncRNA downstream 128921 13780620 ~ 13781582 (-) False LOC122360145
TU166006 lncRNA upstream 138922 14110148 ~ 14110462 (-) True G112464
TU166021 lncRNA upstream 237170 14208396 ~ 14210533 (-) True G112473
TU166022 lncRNA upstream 239467 14210693 ~ 14210939 (-) True G112474
TU166033 lncRNA upstream 321513 14292739 ~ 14296572 (-) True G112479
TU166037 lncRNA upstream 331898 14303124 ~ 14303535 (-) True G112483
XM_043260367.1 mRNA downstream 10688 13894615 ~ 13899815 (-) True LOC122360057
XM_043261099.1 mRNA downstream 22985 13881158 ~ 13887518 (-) True LOC122360471
XM_043261098.1 mRNA downstream 34974 13866380 ~ 13875529 (-) False ceacam1
XM_043261097.1 mRNA downstream 34974 13866380 ~ 13875529 (-) True ceacam1
XM_043262053.1 mRNA downstream 66135 13841308 ~ 13844368 (-) True cxcr3.2
XM_043261428.1 mRNA upstream 6531 13977757 ~ 13996272 (-) True znf574
XM_043261392.1 mRNA upstream 27011 13998237 ~ 14011670 (-) True gsk3ab
XM_043261355.1 mRNA upstream 49737 14020963 ~ 14058189 (-) False cicb
XM_043261354.1 mRNA upstream 49737 14020963 ~ 14058189 (-) True cicb
XM_043260680.1 mRNA upstream 89527 14060753 ~ 14103280 (-) True erfl3
TU165859 other downstream 226594 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 2498726 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 2624071 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 3027292 10861951 ~ 10883211 (-) False LOC122360812
TU166030 other upstream 263328 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 938099 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 1497254 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 1497254 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 1497254 15468480 ~ 15495722 (-) False rps19

Expression Profile