RNA id: XM_043261954.1


Basic Information

Item Value
RNA id XM_043261954.1
length 3408
RNA type mRNA
GC content 0.41
exon number 13
gene id LOC122361022
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 10364421 ~ 10372271 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGGAATGCTTTGGATTCATCAATTCACTGAAAACCAGCTCACGTAGAGGATTGTCGGTGTGTTTGTTCTTCccgggttttttttaattttacccaGCGTCTTGCAAATTCACGTTAAATTTGTAACACTTAAGGACGCCTGACGAAAGAGTGCTTGTGAGCTCTGTAACGGTAAAGTTGGATGGATCCTCGGGTAGCTTGGATTCAGCCAGAGCAGAAAGGACCTGCCAACGCTTTATGGATGCGCGTATGGGAAACCTCGCAAAGGCGAAACCACTGTCACTCACTGCGGGTAAATACACCTGCGTTGACGGCCAGTTTTATGAAGCGGTTTTCGCAGGTTCCCACCAACACCGCTGGAAAGACTTTTAACAGCTACTCCAATCAGCCTTATAATGATAGTGGTGCCATGAGGTCTCCAAACGCATGTTCTGACTCTGCACCTCCTTATGTCACCCCTATCAGAGTCAACGGTAGTGATCCTTCGTCACCTTTATCTTCAGGTGATTCAGAGAGTGACAGCCCGACGTTAGATTTATCATCAGCCAGGGGTGACAGTATTGGCGCAAATCCAGCCAAAGTTCGCTTTAACTTTACTGAACATATGCACAATGTCAGTAACAGTTTGCAACAACAATATCAGCGACTGCAAGCACAAATAATAATGGATAACCAACTTAAGCATTCAGTGAGAAAGACAAGCGACAATAAGTCGAGCACATATGGAATGAACTACTTTTTGTCCCACTCTAACGGCAGTCATTTATGTGTGACCCCTTGGGCAACTAGAAGATACAGTCCGGGTATTAACGGGCTCCACGAGGAGATagtggatttttatcatttcatgtCACCTCGTCCAGAAGAGGAAGAAATGAGGAGAAATGTTGTTAGCCGTATTGAGGCTGTAATCAAAGATCTGTGGCCTATGGCAAAGgtTGAAATATTTGGCAGCTTTAGTACAGGACTTTACCTTCCTACTAGTGATATTGACCTGGTGGTGTGTGGAAAATGGGAACAACCACCTCTGCAGCAGCTGGAACAGGCACTCAGGCAGAATAAAGTGGCTGAGCCTTTCTCCATTAAACTACTTGATAAGGCTACGGTACCAATAATTAAGCTGactgacagacacacagatgTGAAGGTGGACATTAGTTTTAATGTTGAAACTGGTGTCAAAGCAGCTCTGTTTATTAAGGATCATCTTAGGcgaTATTCTGTGCTGCCTTACTTGATCTTTGTACTGAAGCAGTTTCTGCTCCAGAGAGATTTGAATGAGGTGTTTACGGGCGGTATCAGTTCCTACAGTCTCATTTTAATGGTCATCAGCTTCCTGCAGctCCATCCCAGAATAGACTGCAGAGCTTCAAATATCAATTTGGGCATCCTGCTCATTGAATTCTTTGAATTGTATGGGCGGCATTTTAATTACCTGAAAACAGGCATTCGTGTTAAAGATGGAGGAGCTTATCTTGCTAAAGAGGAGATCATGAAGGTTTTGGAAAATAGATATAGACCGTCAGTGCTCTGTATTGAAGACCCAAATTTGCCAGGAAATGATGTTGGCCGGAGTTCTTACGGTGCCTTTCAGGTGAAGGAGGTATTTAACTATGCATACCTCGTCTTGAGTCATGCTGTGTCACCACTTTCCCGCTCCTACCCCAATAGAAATATGGAAAGCACACTTGGACGCATCATTAAAGTGACCCAGGAAGTGATTGACTACAGGGAGTGGATCATTCAGCAGTGGGGAAACAGACACAATGTCAGGATGTTTGACCGTAAAATTCAGAATGTTGAAGACTCAGAGGAGCAGACCTCAAGTGAGGAGCAGGAGAGAGATTCCTCATCACCACACAGTGCAGGCTCCCCTGTATCACTGTCCCACCTTCAGCAGCACTCTTCAGCTTCCTCATCTTCCTCTGTGTCTTCGTTTTCTGGGAGTGACATAGATTCAGACACGCCATGCAAAGCTTCAGTTCTTCAGAAGTTCTTTCCAGTGTCCTGCATGGCTGATAACAGTAAGAAACCACAGAGAAAAGTGAAATCTGGAACTTTCCTCCACTCCAGAAGTCAGTCGCAACCTTTACCCAGCAAACGATGTATGGATGAGTTGACTTGTGTGAAGGGATTAGTACACGTGTATCCTGTTTACTCCAGCTCCACACCCAGCCCTAGTCACTACACTAATGGATTTGAGGGGCCTCCACAAACTGGTTGTTTAGTCCATAACACTGTGCCTGCCCCCAGAGGTCAACAGTATGGGCATAACAGTTTGCGGCGCCGGCGAAGAGAGACTGCTCCCATGAGTTTCAGCAGATAGTGCTAATCTTTTCTTCTGTCCAAGACAAAGTGTTTGGGCGACAGTCCTTTTCGGTTCAATAGATCAACAGCAGTCTTACACTCAATATGGACAGTGTCTGAAATTGcactttaatttgttttgctcTAACTACACTTTTGAATTTGACTCCATTTGTGCACTTTTCTACCTCCTCTGATTTGTGTTGTCTTAATCTTTGTATGTATAACaaagtttactttttatttttttatttactagtATGTTCAGTTAGtagtttcttttaatttttaaaagtattttggaTGCTGTCTTGTCACAGCATCGCtaggctgttttatttttttttttttattaatattttttttttaaaccattgctGTAAGCCATTGTGAAATACTATCTGCAATGTGACTTTAAAAAggtatttctattttaattttttttgaatgcaaGTTAACATTATActatatgaaattatttttgtatcaaacttctttttaaaagtatccAGTGGATGACTTTTATAGGcacctattttttatttttttgtgtctgtttgcaCAAGTGATCTTTTGATTTAAGgatatgctatttttttacaAGGTGTAGGAATGCTGTCCTTAATCACTTGCATattcttttgcttttcattttttccacCCACCCTCAAATGCATGCAATGGTCTGAATGTTGTTTTCTTGAACTTCCTATTTTGTGACCTTTCATCCACTTtttgaaatggatttttttgtatacatttttgctAGTTCACCATTccttaacaaaatattttacactacATGTTTCCAAACATCTTATAACAAGATTTTTGGCATTTCATACCTTCTTGCACGTTTTGTTGTTTCTAGGGCCTCTGATACAGTCTCCATTTTGACTATTTAGTATATTGACAAGTGAGCCTTAACTCTGCTAGATGTAAAAGAAACACTGCTGGTTTGATGAACAGAGTTTTTTGTGTCTTGAACAAGGACAGTACAGTGATTTAGTTCCAGAAATCAATCACTGAGTACTCTTTTTCACTTGCATGTAGGTACCATTTGAATGTAGTGTATTGTCTTCAGTTTAAGATGTCTCtta

Function

GO: NA

KEGG:

id description
K03514 PAPD5_7, TRF4; non-canonical poly(A) RNA polymerase PAPD5/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164074 lncRNA downstream 461440 9889071 ~ 9902981 (-) False gask1a
TU164073 lncRNA downstream 476192 9879635 ~ 9888229 (-) False gask1a
TU164072 lncRNA downstream 488757 9875392 ~ 9875664 (-) True G111097
TU164002 lncRNA downstream 609441 9754315 ~ 9754980 (-) True G111048
TU163998 lncRNA downstream 687916 9674864 ~ 9676505 (-) True G111045
TU164327 lncRNA upstream 357897 10730168 ~ 10730415 (-) True G111298
TU164374 lncRNA upstream 419293 10791564 ~ 10793616 (-) True G111329
XR_006252847.1 lncRNA upstream 551844 10924115 ~ 10924764 (-) True LOC122361039
TU164468 lncRNA upstream 787568 11159839 ~ 11160056 (-) True G111393
TU164502 lncRNA upstream 852915 11225186 ~ 11225409 (-) True G111420
XM_043261970.1 mRNA downstream 9825 10287086 ~ 10354596 (-) True adcy2a
XM_043261624.1 mRNA downstream 170127 10099563 ~ 10194294 (-) True triob
XM_043260850.1 mRNA downstream 309596 10014939 ~ 10054825 (-) True cobl
XM_043260657.1 mRNA downstream 355244 9947351 ~ 10009177 (-) True grb10b
XM_043261951.1 mRNA upstream 140 10372411 ~ 10386594 (-) True ice1
XM_043261955.1 mRNA upstream 19563 10391834 ~ 10403036 (-) True prpf3
XM_043261956.1 mRNA upstream 35744 10408015 ~ 10422279 (-) True LOC122361025
XM_043261969.1 mRNA upstream 180889 10553160 ~ 10569797 (-) False mal2
XM_043261968.1 mRNA upstream 180889 10553160 ~ 10569792 (-) True mal2
TU163906 other downstream 1091816 9270971 ~ 9272605 (-) True G110974
TU163829 other downstream 1212238 9145930 ~ 9152183 (-) True G110911
XR_006252934.1 other downstream 1716866 8647414 ~ 8647555 (-) True LOC122361375
TU163623 other downstream 1728199 8633350 ~ 8636222 (-) True wu:fj39g12
TU163343 other downstream 2047736 8312265 ~ 8316685 (-) True G110556
TU164366 other upstream 374522 10746793 ~ 10748300 (-) False LOC122361037
TU164396 other upstream 489680 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other upstream 489680 10861951 ~ 10866428 (-) False LOC122360812
TU164545 other upstream 898393 11270664 ~ 11286432 (-) False G111450
TU164609 other upstream 1038407 11410678 ~ 11411777 (-) True G111490

Expression Profile