RNA id: XM_043261955.1


Basic Information

Item Value
RNA id XM_043261955.1
length 3010
RNA type mRNA
GC content 0.45
exon number 17
gene id prpf3
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 10391834 ~ 10403036 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGATTTCCGTTTCCGTTTCGCCGTTGGAAAACGTTCAGCGGACACCGTGGGAGTAGAGAAGTCTAGAAACAGTTCAGaataatttgtaaatttaaataactggtgtattatttttatcaacGAAATTTGGTGTGGCGGACGAAAAAAACGAGGATTAAATAGTAGCGTAAAAACTCTTTAGGCCGCTGGAAAACAGCCGAGTAAAGTGAGAGATTTTCCCCCAGAATGTCTCTGCCCAAACGTGAGGTTGATGAGCTGAGGCCATGGGTGGAACGTACAGTAAAGAAGGTCCTTGGTTTTTCTGAACCTACTGTGGTCACAGCAGCGTTGCATTGTGTAGGAAAAGGCCTggacaaaagaaaaactacagaCCAACTAAGGCCGTTTCTTGATGATTCAGCAAGCAGCTTTGTTGAGCGTCTGTTTGAAGCTCTTGAGGAAAGCAGGAACTCCCGTGGCAACAAAGGAGCAGGAGAGAAGAACCGCAAAAGAGAGCTAAAGGAAGTGTTTGGAGATGAGGTGGAAGGGGTGAAGGATGGAGGCAGTGTGGAATCTGTGGTAAAAAAGAAGAGGGTACCTCGCTTTGAGGAGGTGGAGGAACCACCCGTTTTACCTGGACCCCCTACAGAGAGTCCTGGCATGCTTACTAAAATGCAGATTAAGCAAATGATGGAAGCGGCTACGCGGCAGAttgaggagagaaagaaacagctAAGTCTTGTGGCTCCTGTCCCTGTCGTGCCGCCTAGATTGGTTCCCTCTCAGACAGACTCTAGTGCTCCACATCCCATCCTTCCAACAGTTGGTTCAACCCAATCCATCGCTCCCTCCCAAGCTGCTAACTTCATGAATGATGCTATAGAGAAAGCACGCAAGGCAGCAGAGCTGCAGGCCAAGATCCAGTCCACACTGGCTATGAAACCTGGAATTCTGGGTACTTTGGGAAACACAGGGCCACATAACCTGGTAGCCCTGGCTAACCTGCACGCCATGGGCATTGCACCACCAAAAGTGGAACCACGTGAAATCACAAAGCCAACGCCCCTCATTTTGGATGAGCTTGGACGAACTGTTGATGCCAGTGGGAAAGAAGTTGAGCTCACACATCGTATGCCCACTCTAAAAGcCAACATCAGAGCGGTGAAGAGGGAACAGTTTCGGCAGCAGTTAAAGGAAAAGCCCAGTGATGACCTGGAATCCACGTCTTACTTTGACTCACGTGTGGCCATCAACTCTGCACAGAGAGCCAAAAGAGGGTTTCGGTTCCATGAACAGGGACGCTTTGAGAAGATTGCCCAGCGCATACGAACAAAGGCTCAGCTAGAGAAACTACAGATGGAGATTGCTCAGGCTGCCAAGAAGACAGGCATACAGGCCTCCACTAAACTGGCTCTTATTGCCCCCAAGAAGGAATTGGGAGAGGGGGAGGTTCCTCACATAGAGTGGTGGGACTCCTACATTCTGCCTTCCCACATAGAACTatcTGCACATACACATTTTGATGAAGTGGAGATGCATGGAGTCACCAACCTAGTTGAACACCCAATTCAGATGGCCCCTCCAGTGGATACAGATAAGCCAGTGACTCTGGGTGTGTATCTGACCAAAAAGGAGCAGAAGAAATTGAGGAGACAAACTCGCAGAGAAGCCCAGAAAGAGTTGCAGGAAAAGGTCCGATTGGGTCTTATGCCACCACCTGAACCTAAAGTGCGGATCTCTAATCTGATGAGGGTATTGGGAACAGAGGCTGTGCAGGACCCCACTAAAGTGGAGGCTCATGTTAGAGCACAAATGGCAAAGAGGCAGAAAGCGCATGAGGAGGCAAATGCAGCACGTAAACttacagcagaacaaagaaaagagaagaaggTCAAGAAACTTAAAGAGGATTTGAGTCATGGGGTTCACATTGCAGTTTACAGAATCCGAAATCTGCATAATCCAGCCAAGAAATTTAAAGTGGAGGCCAATGCAAATCAGCTGTACCTCACTGGAACCGTGGTACTTCACAAAGACGTCAACATTGTAGTAGTGGAGGGAGGCCCCAAATCACAGAAGAAATTTAAACGACTTATGTTGAGTAGAATCAAATGGGATGAGCCAAATTCCAAGAGAGATGAGCCTCAAGATTCAGATGATGAGGGTTCcagaaagaataataaatgcacattggTTTGGGAGGGTACAGCCACAGAACGTAGTTACGGGGAGGTTAAGTTTAAACAGTGTCCAACAGAAAGTATGGCTagggaacattttaaaaagcatggcACTGAGCACTACTGGGACTTGGCTTTGAGTCAAAGTGTTCTGGAGACAACTGATGactgagaaacagacagagctCGAAGTAAAAGAAGAATAACAAAGAAACAGTGGAGCCTATGGCATgcgcacacatttttttttctttttaattctacaaaagagagagtgaaggaagtgaaatagacagacagagagaaatctGTATATGTAAATAGAGTTTGAGTGTGTAAGAGAATGATTGTTTTTGTACCTGTAACGCAAGTGTGCCAGGCTTAAGAACAACAGCTGGTTTAATGAGCTAGGATGTTAACCCTTATGTGTACTGCAGAATAAGAGTGGACTCTGGTTTTGTATCTCTTGTAACAGTTTTATAGTGTAGGCTGTGCGGTCTTTGATTGTAATTTTGATTTCTATCTTGGATCCATCTCGAGTCTTGCATCTTGTGCTCAACATTTTGATGCAGTCTTTTCAGTAAATAAGCCTCACTCTCAAAATAAGTTAATTCGCACTGTGTAGTTTGTTACTGAATGCACAAACGAGTATTGGTTTCTTTATTACACAAAACTGGTAATTCTAGTATGGCTAAAGAATGGATAAATCTTTATTTGGCTCAACTATAAATGTCCAACAGgaagttatttaaatgtaatgcccttttttttttctccaaaattaCATGTCATTCATCAAATGTGAAAGTGCAACTAACCAGATGCCATGATTAAAGCTAGTTGATACAGA

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component

KEGG:

id description
K12843 PRPF3, PRP3; U4/U6 small nuclear ribonucleoprotein PRP3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164074 lncRNA downstream 488853 9889071 ~ 9902981 (-) False gask1a
TU164073 lncRNA downstream 503605 9879635 ~ 9888229 (-) False gask1a
TU164072 lncRNA downstream 516170 9875392 ~ 9875664 (-) True G111097
TU164002 lncRNA downstream 636854 9754315 ~ 9754980 (-) True G111048
TU163998 lncRNA downstream 715329 9674864 ~ 9676505 (-) True G111045
TU164327 lncRNA upstream 327132 10730168 ~ 10730415 (-) True G111298
TU164374 lncRNA upstream 388528 10791564 ~ 10793616 (-) True G111329
XR_006252847.1 lncRNA upstream 521079 10924115 ~ 10924764 (-) True LOC122361039
TU164468 lncRNA upstream 756803 11159839 ~ 11160056 (-) True G111393
TU164502 lncRNA upstream 822150 11225186 ~ 11225409 (-) True G111420
XM_043261951.1 mRNA downstream 5240 10372411 ~ 10386594 (-) True ice1
XM_043261954.1 mRNA downstream 19563 10364421 ~ 10372271 (-) True LOC122361022
XM_043261970.1 mRNA downstream 37238 10287086 ~ 10354596 (-) True adcy2a
XM_043261624.1 mRNA downstream 197540 10099563 ~ 10194294 (-) True triob
XM_043260850.1 mRNA downstream 337009 10014939 ~ 10054825 (-) True cobl
XM_043261956.1 mRNA upstream 4979 10408015 ~ 10422279 (-) True LOC122361025
XM_043261969.1 mRNA upstream 150124 10553160 ~ 10569797 (-) False mal2
XM_043261968.1 mRNA upstream 150124 10553160 ~ 10569792 (-) True mal2
XM_043261967.1 mRNA upstream 168715 10571751 ~ 10587718 (-) True colec10
XM_043261971.1 mRNA upstream 342540 10745576 ~ 10764305 (-) True LOC122361037
TU163906 other downstream 1119229 9270971 ~ 9272605 (-) True G110974
TU163829 other downstream 1239651 9145930 ~ 9152183 (-) True G110911
XR_006252934.1 other downstream 1744279 8647414 ~ 8647555 (-) True LOC122361375
TU163623 other downstream 1755612 8633350 ~ 8636222 (-) True wu:fj39g12
TU163343 other downstream 2075149 8312265 ~ 8316685 (-) True G110556
TU164366 other upstream 343757 10746793 ~ 10748300 (-) False LOC122361037
TU164396 other upstream 458915 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other upstream 458915 10861951 ~ 10866428 (-) False LOC122360812
TU164545 other upstream 867628 11270664 ~ 11286432 (-) False G111450
TU164609 other upstream 1007642 11410678 ~ 11411777 (-) True G111490

Expression Profile