RNA id: XM_043261978.1


Basic Information

Item Value
RNA id XM_043261978.1
length 4911
RNA type mRNA
GC content 0.48
exon number 16
gene id spire1b
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27180637 ~ 27204293 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCATTCTTCGCGTTTGCGACGCAGAAGCAGCAGtgagcatcatcatcatcatcatcatcacaccgAGCGCAGGTGCTTGATCTCCggctctcctctcctctccgcCGGATAGGATGAGACGATGGCCCGCCGAgagagatgaagatgatgacGGACGCAGGctgatggaggaggaggaggaggaggaggaggaggaggatgcgCGTCTCATCATGGACAGCGAGGACGAGGACGGTCTGTCCCTGGAGGAGATTTTGCATCTTTACAAGCAGCCCATCAACGAGGAGCAGGCGTGGGCTGTGTGTTATCAGTGCTGCCGCTCGTTTCTGGAGGACTCCGCCGGGACCGGAGGAGCGGGGCACGTCCGGATCTATAGAGACGGGTCGGTGCGCTTTCGTTCCGGAGACCGACCAGGTGTGCGTGATCCCAGCCGCTCCTCCACGCAGGTGATCGAGTCTCTGGGCATCATGATCTACAAGGCTCTGGATTACGGGCTGAAGGAGAACGAGGAGCGAGAGCTGAGTCCGCCGCTCGAGCGGCTCATCGACCTCATGACCAACGTGGCCGAGGCCGAGAGCGACTCCTGCGCCGACGAAGGCTACGCCGCCACCGAGGAAGACGAGGATGACCGCGACCCCGCCCACACCTGCCGTATCCGCGGCTACCGTGACATCATCAAGCTGTGTGCTCTTCACCTGCCGACGCCGGCCGATGCACCCAGTCATTACCAGGCCGTGTGCCGAGCTCTGTACGCCGAGACCAAGGAGCTCCGCACCTTCCTGGAGAAGATCCGCAGCGCCAAAGAGAATCTGCGTAAGATGGAGGGCGACACCGTCGATGAACCTGGCAGGGAGCTGAACGAGCTGCAGAACGCTGATTGGGCCTGGCTCTGGGTTCAGGTGATGCGAGATCTGAGGAACGGCGTGAAGCTGAAGAAGGTGCAGGAGCGCCAGTTTAACCCGCTGCCCATCGAGTTCCAGCTCACGCCGTACGAGATGCTCATGGACGACATCCGCTCCAAACGCTACAAGCTACGCAAGGTCATGGTGAATGGAGATATTCCTCCGAGGTTGAAGAAGAGCGCTCACGAGGTTATTCTGGAGTTTATCAGGTCCAGACCGCCTCTCAACCCCGTGGCGGCGCGTAAACTCAAACCCCAGGCCGAGCGTCCTCCCAGTCTGCACGAGCGCATTCTGGAGGAGATCAAATCAGAGAGGAAGCTGAGGCCCGTGTCGCCTGACATGATCCGTAGAAGTCGATTTGACGTGTCTTCCTCGGACGGGGCGAGGAAGGCCTCCAGCACGCTGTCTTTGGCCAATGGCATGTCTCTTCAGCAGAACGGCTCCGGAGGCTTTCAGAGGAAAAGACTTCAAGCGCCGACTCTGGCTGAACTGGACAGCTCTGATTCAGACGATGAGACTataggtcaaaggtcagccaGCTGCTCCAGCATGTCCACATCCATGGTGGATGACACTTCGCCAGAATCCGTCCTGGGCAAGAAAACTCCGCCCATGTTCCTGCCCATCTCGTCCACGCCGCAGCCGGAGAGACGTCAGCCCGCCCAGCGCCGGCACTCCATCGAGAAGGAAACGCCCACCAGTGTGCGCCACTTCCTGCCGCCCTCCAGACACAGTTCAAAGTCTTTAGAGGAGTTTTGTTTCCCGGTGGAGTGCCTGGCTCTGACGGTGGAGGAAGTGATGCACATTCGCCAGGTTTTGGTCAAAGCTGAACTGGAGAAGTTCCAGCAGTACAAAGATATCTACAATGCCATGAAAAAAGGGAAGCTGTGCTTCTGCTGCCGGACGAAACGGTTCTCCTTCTTTACCTGGTCCTACACCTGTCAGTTTTGTAAAAGGCCTGTGTGTTCACAATGCTGTAAAAAAATGCGCCTGCCATCAAAGCCTTACGGCACTCTCCCCATTTACTCTCTGGGTCCGTCCACATCGACTCTGAAGCGCGACGCATCCAGCCACAAGCCAGAGAAGCCCAGTACAAGCCACCATCGACCCAGCCTACAGCGCACAATGTCCAGACTATCCAAGCACACGCGTCAGTCGTCCTCGTCTCAGGAGGAAACGGAGCTCCCGAAAGAGCTGATGGAAGACTGGAGCACCATGGAGGTTTGCGTCGACTGCAAGAAGTTCATCTCGGACATCATCGCCTCCAGCAAGCACAGTCTGTCTCTGGCCAACAAGAGAGCGCGCTTGAAACGCAAGACTCAGTCCTTCATCCTGGCGTCGGAGACGGGCGCGGAATACCGGCCTTCGGAGCGAACTATCAATGAGGTTTAGATGAGTCTGGATCCGGAGCAGATGCTGGTGTAGTTGTACAGATTAGGACGGGTCAGTCAACCGCGATATACAGGGCCAATAAACTCTTATGGGTGTGTAGCAGTTCTTCCACAAACACGTGGCCGTTTTCTGTCCTGTGCTGTAAAGATGTGGTTACATTAGTGAGATTTCACAGCCAACGATGACCTCGTCCGGGGTCAATAATAACCGCTGTTCAAATATCAGTCACCAAGCACCTTTCTCTTGGTCTGCACGGTACTTGTTTGATGTATGGAGTCTCACACGCGATATGCGACAccttaatgcatttattcattcccTCGTTTTAATAATACGCACCCTCAGTTTGGCTAAATAAGAATTTCTCCTCATGACTCCTTTTGCATTAGAATGTAGGAGCAAACGTTTCTTAATTTACCTCCACAGGCTTATTACACATAGATTTTTTGTTCccagtgctatttttttttgtgcatatcgTGTTTTAAACGAGCAAACTGCGCGTCTCACGAAAACGAGTATAAATAGCACGCACGCTTTTTTTGGGCGTGTATATATGACACGCGCGCGTTTGGCGTACGCAGTTTTCCCGCGAATGTGACGCATCCGATTTCTCGCACGCATCTAACACGTCTACCCTAATACATCACGTAGCATAAACACGCCAAAGTCTATTTTTTTGCGAATTTAAACGCTGGTATCTGGCGCACTATTTACAGGAAACTTTAAAAGAAACGTTCCTAACAAAATGGCTGGGTTTTGCCGCGAAATCACGCTGGGCGACCGTAAACACGACCGCACCTTAACTCATTTTTTCACACTTTAATCGGTGAACTCTGGGCCAAGCCTATCTATTCTCGCGTCACGTGTTACGCTGCACGTTCCTTACGTTCTGATTTGCATATTGGCGGTGTCGGCGTCGCCGATTGGACGAACGCGTGCttcaaaatggctttttaaaatggcGCCTTCGCATTATCGCTGACTGCGTCGAGTTTTTCCCCGCAACGGAATGTCGAACTGTAAAGGTTAGATCTTTTTTCTTTACTCAAATTAACATGTTTTCTGTCGCCGTTTGATACTCTTTACCTCAAACGCCGTTCATGCACAAAAACTAcaactgcaacaaaaaaaacacataacctCGAGTTAACGGCGGTTATAATCTCTAAAAacgttcttttaaaaacaacaccGGATTATTCgcaatgtgaaaaaaaacaatatttaagcATCCTTTTTATATAGCAAGCACGTGCAGGTGTTAAAGTCAACGTGAAATGACTTCCGTATGACTACTTCCGTAACGTGACGTCATGGTGGACGGTCTACTGAATATTCATTAGTTTTACAAACCTTCCTCGTCTTGTGAATTGCAACCAGAGtattaaacaaaaagacaataaaaacaggCCCAGGACCTCGTTCACAGGAAGACCGGCGACGTGCAAAAGACtgtgttttgatttcatgtcgacttttaaatgtgtaaatgtctaaaatgtcagtcatattaaaacaaatacagtcataataaaacaataagcaCAACGCGTCACTCAGCACAGAAGCTGAAAATCAGTGAGCTGACATTCGGGTCCTGTTAgatagctattgtttttttatttgtgacttTCATATGTCGTTGaccgtgtgtgtatataaatatatatatttgtacagcTCACGTGACTCATATCTAGGTGAGATTTGATTGTAAATTGCGCGCGCGTTGATCGAAGATAATCGTGCTCCTGTTTTATGTATCGAAAGGCATGAGGAGTTCAGGCTGATTTTATAAACTTTAagagttgcatttatttttagtaatgtttactttttacatgATTTATGGTTTATAGGTCAGGTGATACCCTGGGACCACACGGCGCTTAATCATGCCAGCTTTGATGACATGTCATTATAAAAACGTAGtgctttgaatatatatatatcttctcaAGCGTTTGGACAATGGAGCATTGTGGCGTAATTTGTCGATCATGTTAGAAACGCATCACATTAATTTAACgtccgttttgtttttttgggcaaattttaatgcatttttttaactagTTTGGGGTTGTATGAGTTTTTATGTTCAGAGCAGCTTATATACCGCATCTTACTTTGATTTCCAGTTATTTTGTGATAaggataaaatgttttttaatatttattcatagaGGTTTTCAATGCAACTTCCTCCCGTTGTGTTTAATAGTAGTTTTGCTAATTGTTTGTCCTCCTGTTTTTTATTAATCCGATAAtgcaatgggttttttttttttttttagaaagaatgAAGCTTATAGCGGTTAAATCTTGTAAAGTTGCCTTTTTCCTTAAATAATCTGACGTGAGAAGAAGCCAGGCTGATATCGTTGTTAAGTTTTATCAGTTTGCTCAGAAGAGCGTCTCCGTTCCTGTTGAGCAGTTATTAATTTGCCTTAGAAACATTGCCTTTTTAAGCGTCCATCGAGTCCCGTCTGTTAGCGGTGTGACCGCACATGCGTTTCAACATCTGCACGAATGCTGTGGATTCGTAAACTCTTGATGTGTTGGAGAATCACAAGACTCGTCACCGAGGCAATTAAGAAacgtaaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172391 lncRNA downstream 23147 27155095 ~ 27157490 (-) True G116700
TU172333 lncRNA downstream 306277 26817032 ~ 26874360 (-) True G116666
TU172344 lncRNA downstream 361789 26816120 ~ 26818848 (-) True G116670
TU172260 lncRNA downstream 367663 26810317 ~ 26812974 (-) False G116632
TU172255 lncRNA downstream 367728 26810317 ~ 26812909 (-) True G116632
TU172404 lncRNA upstream 34694 27238986 ~ 27240139 (-) True G116710
TU172405 lncRNA upstream 36323 27240615 ~ 27241091 (-) True G116711
TU172416 lncRNA upstream 95202 27299494 ~ 27307565 (-) False G116721
TU172415 lncRNA upstream 102327 27306619 ~ 27307565 (-) True G116721
TU172418 lncRNA upstream 103484 27307776 ~ 27308221 (-) True G116723
XM_043262082.1 mRNA downstream 102022 27075504 ~ 27078615 (-) True LOC122361113
XM_043261716.1 mRNA downstream 182288 26993974 ~ 26998349 (-) True LOC122360878
XM_043262081.1 mRNA downstream 210697 26957641 ~ 26969940 (-) True LOC122361111
XM_043261138.1 mRNA downstream 292640 26880098 ~ 26887997 (-) False LOC122360494
XM_043261135.1 mRNA downstream 292774 26878671 ~ 26887863 (-) False LOC122360494
XM_043262026.1 mRNA upstream 9798 27214090 ~ 27223999 (-) False LOC122361070
XM_043262027.1 mRNA upstream 9799 27214091 ~ 27228568 (-) False LOC122361070
XM_043262028.1 mRNA upstream 9799 27214091 ~ 27228565 (-) True LOC122361070
XM_043262029.1 mRNA upstream 9799 27214091 ~ 27225367 (-) False LOC122361070
XM_043260799.1 mRNA upstream 25494 27229786 ~ 27242739 (-) False zdhhc11
TU172373 other downstream 182278 26994167 ~ 26998359 (-) False LOC122360878
TU172354 other downstream 224803 26954220 ~ 26955834 (-) True G116677
TU172337 other downstream 304027 26874398 ~ 26876610 (-) True G116668
TU172263 other downstream 367663 26810317 ~ 26812974 (-) False G116632
TU172261 other downstream 367728 26810317 ~ 26812909 (-) False G116632
TU172454 other upstream 154415 27358707 ~ 27360829 (-) True G116745
TU172389 other upstream 315898 27520190 ~ 27579864 (-) True LOC122360079
TU172557 other upstream 419135 27623427 ~ 27627660 (-) False LOC122359885
TU172608 other upstream 503424 27707716 ~ 27727944 (-) False G116836
TU172609 other upstream 588412 27792704 ~ 27804770 (-) True G116836

Expression Profile