RNA id: XM_043261994.1



Basic Information


Item Value
RNA id XM_043261994.1
length 3532
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC122361052
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1282311 ~ 1292313 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCGAGTTAAAACCGGGATGGAAATTGAATATGAGTCGCTGTCTGAACACATGCAACCATTATTTCTCCAAGCCAGACTCACTTCAACATGACTCGCTCTCGTCTACAGCATCCTCCTCTGTGAGGTGGGCTCTTTGAGGCGTTTCTGAGAACACGGTATCACCTGACTACATCTACCTGGCATCGGCTTATTAAGAACAGACGATGATGATAGAGGAGGATGAAGCGGAGGCTCATCAGGTGGATATGGAGTCGGATTTGGTCAGCAGACCTCGCTCGTGCAGCTGGACGAACGACTTCTCGTGTGAGCTGAACGCGGATCTGTCGCTTAATCTCTCCATATTTAAAGTAGATTCGGGTCATGTTCAATCACCGGCGTgcaggaggaggatgatgatgctGGATGCCGGAGGATTTCGCGACTTAGCGGGAGCTGCGTTACGCAAAACCAAGGCGTCCTCCCGGCGGAACGCGTGGGGAAACCAGTCCTACGCGGAGCTCATCACCCGAGCCATCGAGAGCACACCCGAGAAGAGACTAACCCTGTCTCAGATCTACGACTGGATGGTCCGATATGTGCCCTATTTTAAAGATAAAGGAGACAGCAACAGCTCTGCCGGATGGAAGAACTCAATCAGACACAATCTATCCTTGCACAGTCGTTTTGTGCGCGTCCAGAATGAAGGAACAGGGAAGAGCTCGTGGTGGATGCTGAACCCTGAGGGGGGAAAGAGTGGCAAGTCTCCACGCCGGAGAGCCACTTCCATGGACAACAACAGCAAGTTCACGAAGAGCCGCGGACGAGCAGCCAAGAAAAAGATGTCGATGCAGGGTGGACTGGACGGTGGTTCTAACAGTCCTGGTTCTCAGTACCCTAAATGGCTCGGCAGCCCCAACTCTCACAGCAATGATGACTTTGAACCCTGGACCACCTTTCGTACCCGCGCCAGCTCTGATGCCAGTACGCTAAGCGGCCGTCGCTCACCCTTCCTACCTGAGGAGGACGAGGCGGGTGAGGTTCCCATCGGGTATCCAAGCACCAAACTGGGCGGCCCCCTCCCCAGCCTGTCCGAAGTGGCGGGTCACCACGGTTCAGAGAACGTGATGATGGACAATCTCTTAGACAACCTCAACCTCATCTCGCCCAAAAATAACACCCAGGGCAGCCAAGATGCCCAAACTGCGTTGTCTTCGCCCATGATGCAGGGTAGCCCTGGGTACCCATCTTACAACTCCCCCAGTATGGGTCCCCAGCCACAAGTCCAGCAGGACTACCGGAGGTGCCTGTATGGACAAGCCAGGGTGGGCGGACAGAGCCCCATTGCCATACCGACTTTATCGGACAGTCAACCAGGAGGCTACGGACCCTTCGTGAGTCAGTACAACTGTGCCGCAGGACTGCTCAAAGAGCTGCTGACCGCAGAGGCCGATCCAAGAGGAGACATGATGCAAACTTTAGAGTCAGTGGGGTCTGGAGAAGGGCGACGGGGGCTACCTAGCTATGCTAGTCAAGGACAAATGGGACAGGGGGGCAAAATGATCACGCATCCTCACTTGCATGGGCATCCACGCTCGCTTCATCAATTGCCATCACCAGGAATGGGCATGAACGGCTGTGGTCTGCTGCCCCACGGGCATCCTGGTCGCCTCGGTAACATGAAGCTACAACCACACCTGCCTCATCATGCTCAACTGGGAAGAGGCGGAGGCGAAGCCAGGATGCCAAATTACACCAATGGCAACGGTTTCCACAGACACGGACCGGGTCTTCATCACCATCACAGCCACCCGGAGCGCCTGCCCAGTGACTTAGATGACATGTCGATCGAGCAGCTGGAGTGTGATGTAGAAACTGTCCTTCACGACACGCTCATGGACGGCGATGCTCTGGACTTCAACTTCGACCCCATGAACAGTCAACAGAGTTTCCCGCATGGAGTCAAGACCAATACGCATAGCTGGGTATCGGGATAAACCCCTTAGCTACTCAAATACAAATAGATTGGTGAGGAAGgctgtttttgaatttttttgtttttcatataatCATCATAACAAGTGTGTGTGaacatatatgtaaatatgtcatAGACATATAGCAGGTCAATCAACAGTTGACTGAAGCAGACTGAATGCTATAGGTCAGACCAAAAGGTTGCACAAACAAGAGAGATTTCAAGCTTACATTTCCTTCATGTCTGACTCAATTATTAAAagtctaaaatacaaaaattacaagtgaatacaaaacaaaagtcaaatgaataaatattttttggcatCATTGAAGCCCATCTCCACACAGTTGCGACTTTTCTTTGCTGTGATTGTTTCTGTCTTGTaattctttcttatttttctgcATATCTCTATATACCTTGCAATTCCAATTTAGTTTTCTCTTAATTCTGAGTGTATCTCTATCACAATTTTCTATAGTTGTgattatatctcacaattccgtttttttttttactttctcgCCTTTTTTACTGAACTACTTTATTTCTCATGGTTTTTACTGAGTGTCTTGCAActccaattttttttctcccaaaccTGAATTTATTTCTCGCCATTGTGACTTTCTTTCTCGTAGTTGTAACTGCAATAGTTATTCGTCCGACATGCATGCACCACCTCCTTCATTATTTCATGTAGTTGTGACTCTATTTCTCTCAATTCTGAATTTCTAACAATCGTGACTCGATTTCTTGTAGTTGTGAGTATAGATCTCGCAGTTTAATCCTCCCGATTCTgaatttatttctcacaattgtaACTTTAAGCCTTGAAGTTGTGATTCCAGTAGATAGTtaattgaaactgaaatattacCACTGTATGCATCaccatcaactttttttttacacttactTACTGACATTTCGTCCGATtctgaattgtatttatttctcacAGTTGCAACTTTATTTCTCGTAATTGTAGTTATTCTCGTATCTCGTAGATATTTCTCTGAACTCTGGCTTTATCTCTTACCACTGCGACTTtgtatactttttataaaatcGACAAACTTACTGACATGACTTTAGTTCCTCATTgcggttctctctctctctctgaagtgCGTGCATGCACCTCATGAACTGTTTACCTCAGTCAGAACTTCAAGGCCAGTGAACGGTCATTATTTACTGATTTACAGTACATTGTTCCAGTAGACTCCATGATTGTCGGGAATCATCATAATCTGCTTTTTGCTTGTGGTTAGTCCGAGTGTAAATATTGAAACGGGCTAATCAAAAATGGTCACGTCAAACACTCACAGACATTTGAgattgttttgtatatttttgcctATTTGGTCTTTCAGTTTGGCACTGTAGGTCACTAAAACGAATTCAGGGCAGATGTGTGTGTCATATAAACTGGAGTGCTGTATAATGTCTGGTATAGTGTACATTATGGTTATCTTTTGTCATTTCAGGGTGctgaatgaatgtgttttgtacagagatgtatatttttgttcttctgATGGGATGGTcaatgaaatgtttatatttgta

Function


GO:

id name namespace
GO:0032873 negative regulation of stress-activated MAPK cascade biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009888 tissue development biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0001568 blood vessel development biological_process
GO:0007389 pattern specification process biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09408 FOXO3; forkhead box protein O3

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU161543 lncRNA downstream 1056 1280870 ~ 1281255 (-) True G109316
TU161535 lncRNA downstream 86482 1113743 ~ 1195829 (-) False G109308
TU161533 lncRNA downstream 160606 1113743 ~ 1121705 (-) True G109308
TU161515 lncRNA downstream 316237 965738 ~ 966074 (-) True G109292
TU161506 lncRNA downstream 471703 810033 ~ 810608 (-) True G109283
TU161547 lncRNA upstream 33307 1325620 ~ 1325934 (-) True G109320
TU161698 lncRNA upstream 228970 1521283 ~ 1521485 (-) True G109430
TU161692 lncRNA upstream 235780 1528093 ~ 1542296 (-) True G109425
TU161707 lncRNA upstream 344103 1636416 ~ 1636997 (-) True G109439
TU161708 lncRNA upstream 348464 1640777 ~ 1641312 (-) True G109440
XM_043260038.1 mRNA upstream 204273 1496586 ~ 1510434 (-) True LOC122359849
XM_043260039.1 mRNA upstream 204273 1496586 ~ 1509311 (-) False LOC122359849
XM_043260624.1 mRNA upstream 252974 1545287 ~ 1549931 (-) False pmvk
XM_043260625.1 mRNA upstream 252974 1545287 ~ 1549823 (-) True pmvk
XM_043260684.1 mRNA upstream 356054 1648367 ~ 1654527 (-) False si:ch73-341k19.1
TU161510 other downstream 399559 882459 ~ 882752 (-) True G109287
TU161498 other downstream 649414 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 987326 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1003837 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1004232 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1835748 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2802444 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3939898 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3943333 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 4067197 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile


XM_043261994.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.2.
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XM_043261994.1 Expression in each Bioproject

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XM_043261994.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
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