RNA id: XM_043261996.1


Basic Information

Item Value
RNA id XM_043261996.1
length 2634
RNA type mRNA
GC content 0.48
exon number 16
gene id grhl2a
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8946171 ~ 8957450 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGTTCACAATAACAGTCACCTTGAGACTTCCGAGAATTAACACAATTTTCCGCTTGATCCTGAATGTTTGGCTGCTCTCCTTTGTGCGGAACAGACGGAGGATGCTGTAATGAGTGTCGGATGCGAGAAGTTGTTTGACCTGTAGTCCGAGTTTCCTTTCAGCCGTTCTCTGCGACTCACCTGCCTCATCTTCACCGACCTGAAAGTCCAGTTTCGCTGTGGGAGCCCAGCAGTGCACATGGCTCAGGAGGAGAATAAGCGTCTGGTGGTGGTGGTCCCTAATGAGATGAATATTCCATCACGCCGTGCCTTCACAAGTGAAGATGAGGCATGGAAATCTTACCTGGAGAATCCCCTGACTGCTGCCACCAAGGCCATGATGAGCATCAATGGAGATGAAGACAGCGTGGCTGCCCTTGGACTCCTTTATGATTACTATAAGGTTCCTAAAGAGAAGAGGCTCTTACCAGTACCCAAACTTCCAGAAGATCATGAAAAGAGCCGGATCGGTCAAGATGGCCTCGAGTCGGCAGAAAATCGAATCCAGGTCCTGAAGTCACTTCCTGTCAACCTGTCGTTGAATACTGACGTGCACAGTGCAGAAAATAAACCAGACCTGTTCGGTCCAGTGGCAGTTGAGGATGGTGTCGTGGCCACTGTGAAAGCTGAGGTTTACGCTCAGGCCTTCTCCAACCATCACCAGCCGCAGGGGGTCCAGTATCAGCGCATGACCTACCATCAGCCTTTACCAGATCCAGCGGGCATCAGCCACGACGGATACATGAAGGACGAACAGTGCAGTACGCCAGACAGCACCTTTGAGGACTCCTACCCAGAGGAGACTATGAAGTACAGGGTGCCCACCACACTAGGGGCAGAAGATTTCTCCCAGGAGCATTCAGGGATAGACATGTTTCAGTACAGTATAGAAGCGAGTCGTTCGGCCCGTGAGAAGGCCGGCGAGGGGCCCATGATCTACCTGAACAAGGGCCAGTTCTACGGCATCACTCTCAGTGAGACCGGGGCCAACAAGGGCCTTCGACATCCCATCAGTAAAGTGCGGAGTGTAGTGATGGTGGTGTTCGGACAGGAGAAATGTCGAGATGAGCAGCTAAAGCACTGGAACTATTGGCACTCCCGTCAGCACACGGCCAAACAGAGAGTCCTTGACATAGCTGACTACAAAGAGAGCTTCAGCACCATTGGCAACATTGAAGAAATCGCTTACAATGCTGTGTCCTTCACCTGGGACGTCAACGAGGAGGCAAAGGTTTTCATTACGGTGAACTGTCTGAGCACCGACTTCTCCTCACAGAAGGGAGTCAAAGGTCTTCCTCTTATGATCCAGATTGACACGTACAGTTACAACAACAGGAGCAACAGACCCATTCACAGAGCCTACTCCCAGATCAAGGTCTTCTGTGACAAGGGAGCAGAACGAAAAATTCGTGACGAGGAGAAAAAGCAGCTTCGgaaaaaggtcaaaggtcaagccGTTGGCCACCAGGGTCACGACGGTAAGAGAGGAAGCTTCTCCACTTTAGCTCAAAAGAGGCCAGATATTACGCTCTTTAAAACCATAACAGACCTGGAGTCCCAGCCTGTCCTGTTCATACCCGACGTCCATTTGAACAACCTCCAGAGAGCGGGTCAGGTGTTCAGTTTTGGTGTTGAAGAAATGGAGAGTGATGGTGTGGCCATGAAAAGACCGTTCCGGTCATCAGAAGAAGACGTTTCTCCACCCGCCAAACACAGCAGGGATGAAAGAAGAGTCCTGCTGTACGTAAGAAGAGAAACCGATGAGGTCTTTGACGCCCTGATGCTAAGGTCCCCAACACTGAAAAGTCTGCTTGAGGCAaTATCAGGCAAATATTCTGTTCCTGTGGagaaaatgactaaaatctATAAGAGAAGCAAGAAAGGTATCCTGGTCAACATGGACGACAACATCATTGCGCACTACTGCAACGAGGACACCTTCATCCTTTCCATCGACAATCAAGTGGACTGTTTTCGGGTGACCCTTACTGAAATTTAAACGCCACCGCCACAATAAGGCGCGCATCTAATGGGAGGACATTTGTTATCCTGAGGCGGCACGCGATTCATGCTGTGCATCTGTTTTGGTTCTTACGAGCTGCGTGTTAGAAGAGGAAGCGCTTCAGTGGACCCGCTTGTACAGTTTAACTCGTTCAAATATACTTCATGACGGATGGTCTGAACAACACATAAAATGCTCTTCCAAAGCACTATAATATGCCAGTCAAGTTTtacggcttttttttttccctttgatGTGCTATATCTCCCCCTTGAGGCCAACGCCGCGAAGCCTAGCAGATTTTCGCATGCATTCAGTCCTTTGCTATAATATTCGAACATAGGAGATCTATATAGATACTCTTATACTATGAAgacattgtattttaatatgctcaGCGTATAGCATACACTGACGGACGGCGCTAATGCTACACTGTATTTGTTATGTATCTTGTGTGTTACATGAATGTATAGTTTACACGTTTTCCTCATTGTGTTCTGTTTTGATGTCTTTACAAAAAATTAACATAccgtgtaaatatttttttatggttttattttatcagtTGAATAAACAAAGTCCAAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163682 lncRNA downstream 100178 8845525 ~ 8845993 (-) True G110807
TU163638 lncRNA downstream 355537 8589898 ~ 8590634 (-) True G110773
TU163610 lncRNA downstream 394619 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA downstream 394619 8547782 ~ 8551552 (-) False G110753
TU163331 lncRNA downstream 706995 8237758 ~ 8239176 (-) True G110548
TU163727 lncRNA upstream 43338 9000787 ~ 9001428 (-) True G110836
TU163733 lncRNA upstream 47089 9004538 ~ 9005206 (-) True G110842
TU163741 lncRNA upstream 49848 9007297 ~ 9007532 (-) True G110849
TU163744 lncRNA upstream 73686 9031135 ~ 9031449 (-) True G110852
TU163808 lncRNA upstream 169236 9126685 ~ 9191339 (-) False G110897
XM_043261561.1 mRNA downstream 1523 8938547 ~ 8944648 (-) False tapbpl
XM_043261560.1 mRNA downstream 1525 8938547 ~ 8944646 (-) True tapbpl
XM_043262059.1 mRNA downstream 83642 8857464 ~ 8862529 (-) True LOC122361100
XM_043262104.1 mRNA downstream 101347 8841494 ~ 8844824 (-) True zgc:174935
XM_043261662.1 mRNA downstream 110569 8834699 ~ 8835602 (-) True LOC122360801
XM_043260904.1 mRNA upstream 3605 8961054 ~ 8996986 (-) False ncalda
XM_043260907.1 mRNA upstream 3605 8961054 ~ 8996986 (-) False ncalda
XM_043260905.1 mRNA upstream 3605 8961054 ~ 8996986 (-) True ncalda
XM_043260906.1 mRNA upstream 3605 8961054 ~ 8978076 (-) False ncalda
XM_043260162.1 mRNA upstream 69531 9026980 ~ 9029706 (-) True id4
XR_006252934.1 other downstream 298616 8647414 ~ 8647555 (-) True LOC122361375
TU163623 other downstream 309949 8633350 ~ 8636222 (-) True wu:fj39g12
TU163343 other downstream 629486 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 643926 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 729576 8216029 ~ 8216595 (-) True G110544
TU163829 other upstream 188481 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 313522 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 1789344 10746793 ~ 10748300 (-) False LOC122361037
TU164396 other upstream 1904502 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other upstream 1904502 10861951 ~ 10866428 (-) False LOC122360812

Expression Profile