RNA id: XM_043261998.1


Basic Information

Item Value
RNA id XM_043261998.1
length 2168
RNA type mRNA
GC content 0.48
exon number 1
gene id tpbgb
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5418473 ~ 5420640 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGATGGAGCGCGCGGCGGGGGAGAGTCATAACAGCGCGCGCAGCGGGACAGAGGCGCGAGCCCCGAGCGGTGCACGCGAAAACATACGGCAAACCACACGATTACGGGTTTGCGGATCTACGGCGTCTTTTTAAAGCATCGGGAAGTTTAACAACAGTTCGGAGTTTTTGCACAGGAGTCGGTCGAGTGATTGGGAGACGCTAACGTTACTTTTGAAGAAACTCGCTTTGCGTTCTGGACTTGGAAAAAGAAGTGACGGTACGAACGCGCAAAGTGACGGAATCGGAGCAGGCGCGTCTCAAATCGTTTGCTTGCTACCGAGGAGCTGAAAGTTCAAAGAGCCACCCCGagtgaaagaacaaagaaaaaacatgtgAGATTTTACGTTAAACGGTTGTTTGAGAAGCGCGAGCACGTTGCTTTCGTCTCCGCGGAGAGAAATACTTTCCCGCCGCTGGGTTCGCGTCGTTTCAAAATGTCCGATGTTGGATTATTTCTTTTGCTTCAACTTCAGAGAAAACAAAGGAACATGTGTAACCTGACTCTCTGTGTTTTACTCTTCCTGACGTGTTCCTGCTCGTCCTTATCTTCATGCCCTGCCCAGTGCTCCTGCGAAACCTCGGCGGTGAGCTGTGTGAGCCAAAACTTGACATCCGTCCCACAGCCCCTTCCAGAAAACATCATCACGCTTAACATAAATGGAAACGAGATATGGAATCTGAACAGTGAATCTTTTCCCAGGCCGCTGGAGCATTTAACAAACCTTTACGCGTCTGGAAGTCAAGTGGAGCAACTGGACTCCCTGGCGTTTAAAAACTTGCCACGTTTGAAGTTGCTCGACCTCAGCAACAACAGGATTTTGGGGTTCAGCGTCGAGGCTTTGCCTAAAGACAACAAGATCGAGGTTCTAAACCTCAGCAGGTCCTTATACAATCACTCCTACGTTGGCGTGCTTGCAGATGTTTTCACGCACCGCCTGCCTAAGGTTTCCCATCTTGATCTGTCCAGTAACGACCTGGTGCTCCTTCCGGAAGGTATGTTCACGGGCTTGTCGGACCTCACCGTTCTGGATTTGAGGAACAACTCGCTTGTTGCAATCAGCAATGACACGTTTTGGAACCGGGCGCTTAAAGAGTTGGACTTGCGAGACAATGCGTTGAAAGTCCTGCCCAACGTGACCCTTGAGAAGCTCAGCTCGGTCCCCGATTTGCGAGTCAGACTCGCGGGAAACCCCTGGCGCTGCGATTGCAATATCGAGGACATGTTGATTTGGTTGGAGAGGCATCAGTTTGTGGTGGACCGATTAAATCTGACCTGTTACAGCCCGGCAGGACTAAAAAATGTCTCGCTTCTAACCTTGGAACAACCGCAGCTCTCGTGCTGGAGCGACGACGGACATGCGATGGACCGCGTGCTGGAGCCCTCCTATGTGTTCTTGGGCATGGTTCTTGCCCTCATCGGGGTCATCTTCCTTCTGGTCCTTTACCTTAACAGGAAGGGAATCAAGAGGTGGATGTACAACATCCGTGACGCGTGCAGAGATCATATGGAGGGATACCATTACAGATACGAGATCAACTCAGACCCGCGGCTAGCCAACCTCAGCCTCAACTCCGATGTGTGACGGGACACTTGCACGAATGGCACGCAACGATCAGACTCTAGCTTTGCATGAATACATATATAACTGTAGAGGTTTGCTGTGACATGCATTCTTTTCCGTCGGATAGGGCGTTAACTGGATTTTGCAAGCATCAACCCCGTTATGCTCACTGCAGGCTCGTTCATATATGCTGGCGTGTTGCTATAATGTTTCCAGTGATGCATGATCAAGTGCATACGTTTAAAATTCATGTTTGCCTTTTCATAAAAGCACAACGGACGGGACTGTGGAGGAAGTCCTGCTTTTTTCCGATGAATTACAGAGTAACCTGTCTTTTATGTCAGAactatcgttttttttttatcgtttcatttattctgcaaaaaaaaacaaaactgttccTACTgccatgcatgtatttatgtattttttcattgatGTAAAATTACGGCAATATccaatttttttatgatgagttATTGGTTTTTATATCTACATTTTGTTGGCTGGACATAGATCAACTCTTCTAGGGGATGCCCTGTTGAATTAAAAGTCTTGCACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162484 lncRNA downstream 20956 5397297 ~ 5397517 (-) True G109956
TU162481 lncRNA downstream 22119 5396130 ~ 5396354 (-) True G109953
TU162462 lncRNA downstream 70914 5346405 ~ 5347559 (-) True G109942
TU162416 lncRNA downstream 97177 5247238 ~ 5321296 (-) True G109914
XR_006252732.1 lncRNA downstream 211054 5198791 ~ 5207419 (-) True LOC122359853
TU162464 lncRNA upstream 15192 5435832 ~ 5437067 (-) True G109944
TU162539 lncRNA upstream 155000 5575640 ~ 5581732 (-) True LOC122360242
XR_006252793.1 lncRNA upstream 156348 5576988 ~ 5578651 (-) False LOC122360242
TU162540 lncRNA upstream 158279 5578919 ~ 5581732 (-) False LOC122360242
TU162541 lncRNA upstream 158279 5578919 ~ 5581732 (-) False LOC122360242
XM_043260026.1 mRNA downstream 38511 5367332 ~ 5379962 (-) True rpa2
XM_043261275.1 mRNA downstream 58055 5355987 ~ 5360418 (-) True ppp1r8b
XM_043260762.1 mRNA downstream 172915 5232211 ~ 5245558 (-) False vegfaa
XM_043260677.1 mRNA upstream 87977 5508617 ~ 5559896 (-) True bckdhb
XM_043260675.1 mRNA upstream 139841 5560481 ~ 5570782 (-) False ttk
XM_043260674.1 mRNA upstream 139841 5560481 ~ 5570782 (-) True ttk
XM_043260679.1 mRNA upstream 150861 5571501 ~ 5573800 (-) True dctn3
XM_043260424.1 mRNA upstream 362027 5782667 ~ 5790534 (-) False si:dkey-283b15.2
XR_006252935.1 other downstream 58794 5359510 ~ 5359679 (-) True LOC122361376
XR_006252797.1 other downstream 173012 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other downstream 173013 5235646 ~ 5245460 (-) False vegfaa
TU162095 other downstream 1322969 4094757 ~ 4095504 (-) True G109724
TU161934 other downstream 2288494 3128061 ~ 3129979 (-) True G109600
TU162692 other upstream 396424 5817064 ~ 5818362 (-) False ndufa3
TU162864 other upstream 523581 5944221 ~ 5948789 (-) False LOC122359839
TU162885 other upstream 608568 6029208 ~ 6034777 (-) True G110208
TU162893 other upstream 676035 6096675 ~ 6099927 (-) True G110215
TU163014 other upstream 1661322 7081962 ~ 7083524 (-) True G110303

Expression Profile