RNA id: XM_043262002.1


Basic Information

Item Value
RNA id XM_043262002.1
length 6111
RNA type mRNA
GC content 0.45
exon number 10
gene id mdc1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14357553 ~ 14365755 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTCAGGAAATGGTTTCCATGGGTTCTGCACGATAAGCTAGAGAGGAGGATGGATGCCACTCAGCAGATCGACGAACCCTtctctgaagaagaagaagaagaagaagaacaggaagCGGAGGAGAAAGGAGGATCAGAAAGAGAACAATTAGCAACACTAAAGGTGTTCAAAAATGAGCACATACCAGAGGCAGAATTCCCCCTCTACATCGGAGAGAATGTCATCGGCCGTGATCCTGCTGTCTGTTCTGTTCTTCTTCCGGCCCGATCTGTATCCAGTCGGCATGCTGTTATCTCCATCTCTGTGTTCCGCTCTAGCAATGATCGTTTTGCTAATGGTGAAGATATAGAAGCACTTTTATGGGACATGGGGAGTTTGAATGGAACCAGAAAAGGCAGATTGAAGCTGACTCCTCAGGTACGATATGCTTTGAACGAGGGAGAGAGTGTGGTGCTCGCTGACGTGCCATGCCAGTACACTAACCTGAAGATCTCAAAGAAAGATACACTCGTAACTCCAGAGAAAGGAGGTTTGCccaaaaagcagcaaaaattaAGTTCAGCTTTATCAAGTAGTGACTCGGAGTCAGAGTTGAGTAAAGGTGTGCGGAATAGGTTGAATGTAAAAGATAGGGGCTTTTTGCCACCTGTGCCTTTATGGAGCCCTGAGGATGAACAACCCAAAATTAGTTCAACCCAGGCAGCTCACAAACAGCCTGAGATCACCCTGGTGCCTGAATCAGACTCAGATGGAGAGAGTGCGCCGGATGAGAGGAAAGATTTTGTTTCAGACTCAGCGTCTTCCTCTCATTTGTGTAGCTCCACAAATTCATCATTCCTGACCCCTGCAAAAAATGTCATTCCAGAGAGTGAGGATGAAAGCTCAATCACTCCATCCTCAGCCTCAATAGACCAGTTCAGACTAAGGCAATCCCCTGATGAGCCTTGTTCAAAGTCATCTAAGCCTGGCCCTCTAGTTCTTAATCTGGACAGTGACATTGATTTTGAAGAAAAGGACATGGAGAAAAGCAAGCCCGAAGCTGAGGCTCAGCCTGAATTAGCTGCAAAGATGGAACCAGTATCTTCCGCTGAATTTCATATGGACAGTGATACTGATGTTGAGGAAGAGGAACCAGGGTCAAGTAAGACTGGACCAGAGGCTCAAAAAGCAGTAACTCTAGAGAAATCTCTATCTTCAGTTGGGCTTCATATGGATAGTGATACTTATGTtgatgaagaggaagagaaaaataaaactgaaacagaGGCTCAGATTGAACAAGCTCTAAATGTGGGACCAGCATCTTCAGCAGATCTTCATATGGACAGTGATACTGATGTTGAGGAAGAGGAACCAGAAGCAAGTAAGGCTGAACCACAGGCTCAAGAAACAGTATCTCTTGATAAATCTGTATCTTCAGTTGGACTTCATATGGACAGTGATACTGATGTTGAAGAAGGTGAGGAGGAGAAAATGGAGACTAAACCAATGGTTCACACCAAAGAAGCTCCAAAAGTGAACTCGGATCTTCATATGGACAGTGATACTGATGTTGAAGAAGGTGAGGAAGAGAAAAGCGAGACTAAATCAAAGGTTCACACTGAAGAAACTCCAAAAGTGAACTCCGATCTTCATATGGACAGTGATACTGATGTTGAGGAGAATGAAGCTTCTATAACTGAAAATGTCTCCAAGGAAGAAGTCAAAGAAAGTGCTTCATCATCAGCACCACAGCATACAGAATTTCACATGGACAGTGACACTGATGTTGAGGATGATATTCCCATAAAGGTTTCTATTGCTACAGAGGTCTCACATCCCATTGGAGAAGGAAGTGATGTCAGGCCTACATCAGCTCCAGAGTCAGAGCTCCACATGGACAGTGACACAGATGTAGATGAAGAGAATGAGGATAAGGAAAAGGCGAAGGCCAAAGGTCTTCTGTTAAACAGTGAAACAGATGATGAGGATTCTTTTAAACCTTTACCAGGCAAAACTGAGAAGGAAGCACAGAGTCACAATGTTTCTGTAGGTAGCAAAGCTGAGCAATCAGAAGAGAGCACCAATAAAAAGCGAGATCATCATTCTCAAGCAAAGACTAATCTTGAGGAACAAACCCAAGCTTTTGGCCACTTTGAAGAAGACTGGGACTTACTGCCCACACAAGCATACGGAACTGCTGGAACCAGTGCTAGGCTCAAACCAACCCATCTTGATTTTGAGGCTACACAGGCATATGGAACCGAGACAGACATGGAGGAAGAGCAGGAGCCTCTGAACCATACCCAACCCTACTCCAACCTCTCATCTGCTGAAACTCAGCTCATCCCAGTAGCAAAGCCAGAtaatgaggaggaggaagataaAGAGACACAAAATGACTCTCACCTTTCCACAGCAGACACTGTGATCATATCCAGCACCCCAAAACGGAAGGAGGAGCAGACGCAGCCTTTTTCTCTCTTCACAGCGCAAACACAACTTGTCTGGGAGGGACAAGACAAAGAGGTTTATCAGAATGAGCCCACCCAGCTCATGACAGACACTGTTGAAGAAACAGAAGAGGCTGAGGAGGAGAACATGAAACGAGGTAGGAGAAGCCGTGGTGGAGGGACAGTACCAGCTAAAGACAGTACCAGTAAAAGCACCAGCTCCTCTTTTATAATTGCTGAAACTCAGCCCATGTGTGAGCAAGTAGAGGCAACAGATGCAAATCTGAGTGGGGATGGCTTTCAGGAACCAAGTACAAGACAACAGGCTGAGAAATATGATTCCGCACATCTTACTGAAAACAACTTTAGCTCCCATCTCACTATAGCTGAAACGCAATGGATGTGTGATGATGACAGTGCACCAGATCAAGACAAAGTGGTCAGTAGTAGTCATATAGAAAAACCCTCCAGTTCTTTTATCGCTATAGCAGAAACACAGCCAATGTTTAAGGTAGATGAAGCACCAGAGGATAATTTAAACAGTGAGGTCAGCACAAGACAAATCGAAGGTGAGCCTGTACATCATATTGAAAAGGCCTCTACCTCTAATCGTGCCATCCCTGATGCACAATCTGTTGGTGAAGACTATGAGGAACAAAATCCCAGCAGCAAGATGTCCATCACAAAATCACGCAGGTGTAGATCGAAAAAACAGAAGGAAGGCCAACAACCTGCTGAGGCTTTTGTCATTCACACTGTAGCAGAAACACAACCAATGTATGAGGAAGAACAAATTGACGATCTGAAAAGTGAGACCAGCTCTGGGAGACAACAAGCACATGAATTCAAATCTCCAGAACTTGCTGAAACAGACCTGAAAGCATTTGTCTCTGTAGCTGAAACACAACCTATGTGTGCAGAAGAGGCACCATATGAAGATCTGATTAATGCAGTTAGCACCAGAGAGATAGATGAAGACAAATCAACAAATCTCCTAGTACCCTCAAGCTCCCGTGTCAGCATAGATGAAACACAGCCTATGCTCGAGAAAGGACAGGAAAAAGACGTCAGCAACAAGATTACAAGCCCAAGATCATGCAGGGGTACACCAAAGAAAGACAAGGTAACACCAGCTGCTGAGGCTGCTGTTCATCAGACAGAAACCCAACCAGTACCTGAAGAAGTGATTGAAAAGGATGAAGATCAGAACAGTGGAGTGAAATCCAGGAGATCTCGCAGAGGAAGGCTGATAAAAGAGGACAGCATTCCACAGGAGAACGCCCAAGAAGGCCCTAGTGGCAGAAGCAGCAGAAGACAGAGAAAAGACAAGGCAGAGGTGAAGAAGGAGACAGCTGCATCTAGTAAAGTTCAAGGTAAACCTAGAAAAGGGCAGGAAGGGAAAAGAAAGAGGGGGAAAGTGTTGTCtgaggatgaggaagagagtgaagaagaaaaaaccaCAAGAAGAGGAACCAGGCGGACAGGTATAAAACTGAAGTgtaatgaaaaggaaaaagaggaaaaattaGATGAGAGGAATGCccaagaagagaaagaaaagatggAGAAAGAGCTCCAAGAACAAAAGGAGACAAAGAGGTTTGAGATGGAAGAAAAGGAGAGACTGGAGtatgagagaaagaaacaagaagaaTGTGAACAAAGAAAGCTGGCTGAAACTGAAATGAGACAAAAACTAGAAAGGGAGCAGAAGGAATTAGAGGAAAAAGAACAACTGAAACgggaagaagaggaaaaaattagaaaagaaaatgagagaatTCAGCTAGAaaaagaacttttaaaaaaagaagagaatgaGAGGTTGGAAAGGGAGAGAAGGGAACTAGAAAGGAAGGAAGACGAAAGaattcagagagaaaaagaccatttagagaaagaagagaaggaAAGGGAAATGctagagagggagaggagagaaCTAGAAGAAAAACGACAAAAGGAACAAGATGAAAGAATTCAAAAGGAGAAAGAACAAAACGAGGTGGAAAGAGAACAATTAGAAAAGGAAAGACAAGAAACTGAACTTCAGATGAAAGCAAAAGAGCAAAAAAGGACTAAGGAGAGAAACCATCAGAAACAAAAGAATGAGGAGGACAAGACACAACTAGAAACTCCACTAGTTCCTCCAGCCAGACAAGCACGCCGCTGCTCAAACTCCTCTGTGAACTCCGATCAGTCTGTCTTCTCACAACAGGAAGTGTCCAGCCAGAGGGGACGAGGACGAGGCAGGGGCAGAGGCCGAGGGAAACAGACAGCTGACGAGCCACCCATTAGTGCTAGACGGTCTAGCAGGAGAGGACTAGTTAGTGCAGTTGAAGACACAGAGCAGGACTCCAATTCAACAACCCGTTCCCGATCCCACTCCAGTTCTAGAAGTTCTGAAAGATCTGCTCATAGTGTCGGACCTTCAAACCAAGGAACCAGAGGCAGAGGCAGAGGCAGAGGCCGAAAGAGTATGAAACTGCCAGAATCGGAAGAACTTTCCCAAGCTAAAACTTCCGGAAAAGGCAGGGGAAGAGGAGGAAGGCTTTCTGGTGTGGAGAATGTATACGTCGGAATGGACAATGATCGTGAACAAGATGCTAAGGTGGAGGAGGACAACACTGCTGTACCCCAAACCAACAGCAGAGGTCGTAAGAGAGCAGCCAACACCAGCACATCCCCTGAAGTGGTTCCTTCACCCACACCCAAGACTCCAAGGCGCTCTGTGGCTAGTCAGGCGCACAAGGTGTTATTCACTGGGCTGTCAGATGAGGATGGAGAGAGAGTCGTCTCTCGGTTAGGTGGAAGCCTGGCAAAAGGAGTGAACGATATGACTCACCTGGTGACTGATAAAGCGAGACGCACTGTTAAGTTTTTGTGCGCTGTTGCCAGAGGGGTGCCAATCGTGACTCCTGATTGGCTGAAAAAGTGTGGAAAAGCTGGCCGTTTCCTTTCTACTGATGATTATATATTGAAAGACACCGAGCAGGAGAAAAAGTTTAGTTTCAGCCTACAGGCCTCACTGCAAACGGCTCAAACTCAACCCCTTTTAAAGGGTTATGAGATTCACGTAACCCCCTCTGTGATGCCAGAACCGtctcaaatgaaagaaatcatCACTTGCTGCGGAGCACGCTACCTCCCCAAAATGCCCTCTGCTCACAAGGAGCATGCCGTGGTGGTGTCATGTGAGCAGGACAGGGCTCTTTGTGTTAAGGCAGTGGGTATGTCATTGCCCGTGGTCAGCACAGAGTTCCTATTGACTGGCATTCTGCAGCAGAAAGTTGACCTCCAGGccttttctctcacttcctctCTCAACACGTCCAATCAGCCTGCGGCCCCCAAAGCTGCTACCAGGGGCCGAAGAAAACAGTGACAGTGACATAGGAAAGGACTTGTGTAATACATTTGTGATCAAATTTGATGTAAGGAGGTTTCGGTATAGATCGCTTAGAATGAATATGTGATGCATATGCGTACAGTTATAGGTTAGATGAGATGCTGCTACACTTGTAACCACGCACCCGACTGATTCCTGTGAATGTGAGAGCTGGAGAGAGTGTGAGGTGAATGTCAATGTATGATGAGTGTTAGTGATGGGAGAATGAGTTCCTCtcactttttaatgtattacttCAATAAACGCTTTCACAGCCAAAATAACGCAAA

Function

GO: NA

KEGG:

id description
K20780 MDC1; mediator of DNA damage checkpoint protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166260 lncRNA downstream 29350 14327952 ~ 14328203 (-) True G112612
TU166037 lncRNA downstream 54018 14303124 ~ 14303535 (-) True G112483
TU166033 lncRNA downstream 60981 14292739 ~ 14296572 (-) True G112479
TU166022 lncRNA downstream 146614 14210693 ~ 14210939 (-) True G112474
TU166021 lncRNA downstream 147020 14208396 ~ 14210533 (-) True G112473
TU166305 lncRNA upstream 132771 14498526 ~ 14498744 (-) False dicp3.3
TU166339 lncRNA upstream 216724 14582479 ~ 14583312 (-) False LOC122359961
TU166340 lncRNA upstream 216724 14582479 ~ 14583312 (-) False LOC122359961
TU166341 lncRNA upstream 216724 14582479 ~ 14587869 (-) True LOC122359961
TU166328 lncRNA upstream 225607 14591362 ~ 14654150 (-) True G112659
XM_043262005.1 mRNA downstream 183 14340664 ~ 14357370 (-) False si:dkeyp-77h1.4
XM_043262003.1 mRNA downstream 183 14340664 ~ 14357370 (-) True si:dkeyp-77h1.4
XM_043261605.1 mRNA downstream 23487 14327561 ~ 14334066 (-) True ino80e
XM_043261607.1 mRNA downstream 23487 14329107 ~ 14334066 (-) False ino80e
XM_043261608.1 mRNA downstream 23487 14329747 ~ 14334066 (-) False ino80e
XM_043262007.1 mRNA upstream 459 14366214 ~ 14371425 (-) False tubb5
XM_043262006.1 mRNA upstream 459 14366214 ~ 14371423 (-) True tubb5
XM_043260167.1 mRNA upstream 17047 14382802 ~ 14413321 (-) False ddr1
XM_043260166.1 mRNA upstream 17047 14382802 ~ 14413316 (-) True ddr1
XM_043260169.1 mRNA upstream 17047 14382802 ~ 14413302 (-) False ddr1
TU166030 other downstream 55934 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 673644 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 2945776 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3071121 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 3491125 10861951 ~ 10866428 (-) False LOC122360812
XR_006252733.1 other upstream 543570 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 1102725 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 1102725 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 1102725 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 1127066 15492821 ~ 15496375 (-) True rps19

Expression Profile