RNA id: XM_043262031.1


Basic Information

Item Value
RNA id XM_043262031.1
length 4572
RNA type mRNA
GC content 0.38
exon number 6
gene id si:ch211-149k23.9
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13136647 ~ 13143911 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGAGAGTACAGAGTGATTACTTTTCACAGGAGGGGTGGGTAATGTCCCAGGACAGAACAGGTCACATGTAAGGGTAGAGGCGTACAGGGGTGTGAAGAATAGGTGGGACAGAGGGATGTTTAAAAGGGCACGGTGGTGCAATGCAAAAGAAGACAGGATAGAAAGATGGAGACGGCGCTAACAGATGGACTGAAGAGGGATTATGGATGCTCTTGGTAGAGTGTGACACCAATTTCCAAGGAAAGGCAGGAAAAGGAGGAGATTTGGGCAGGATTGTACCAAAAAAGGGGAAAAGCAGAAATAATCGCAAAAGGATAAGGAGGGAAACTGCATGCTGAACCAAAGAGACGAGAACCTTCTGTGTTTAACTGCTGCACAGAAGGTGGAAAAAGATACAAATTAATGGATCGAAATAGGGAGTTAATATTACGATGGACATGATGTAAGAAGATTAACGTgcacaggtaaaaaaaaatcagctttttgtAATGCAGAATAATTGTTGATTTTCTTGTAAAACCACTATATTTCATTCAGAATTCTGCATGTGTAATAATGTGACGCATAAAAGATATAGATCATGATGCATGACGCATGATGCAAACCATTTGGTTGTAAtcttaacaattaaataatcgATTCAAGCTCATTTGACTATTAGCAgacattttgtatttcatcaCTTACAAATGCGTTCAAcccattttaaatttaagcttGAATATTCCAATAAACTGTAGAGGAAATATTCTGACGTTGCCATAAAAAGCTGTTTCCAGTTGATATAAcccttaaaaaaagatttttttaaatataatttgcggtaatgtatttaggtttttttcagataataaactatatttttttaatcagtttttttatgtttatagaactccatattttatgtttattataaataaataaaaggtatccttaaaagagtaaaaaaaaagaaacatgcacACCTACAAAGCCCAAACAGATTAAAACAGATTATTAGAGGATTACAAGTAAAGTTAGACTTAATGCGAGAGCTTAACTAATAATTTCATCACGTAACTTCAAACGTAATCCTTCGAATTccctctttttccttttctcatttttaatccCATTCAGGGctgtactgaaaataaataatagtttcaaatcatttatttagcattacgtaaacatgtttttttcccctctggaTTATACAGTTTTGCTCATAAATTTACATACCTTAAGGGATCATACAAAtagcatgttatttatttctttagttatttatgtatattttaattttagtgcgGTTTATCATAAATTTTTGTCCTGAGAAGTTCCTGCAcattcctttgttttttttctgcatatcTGAACTCGTTCCACCAGCAACTGTGTGATTTTTAGATGTAAAAAGTTTTAGATATGTAAACGTGGTTGTTAACTTTTTGAATTGGATTGGGGCTGCACTTATTTTGTATTCTGGGAAACATAAAAACTTTGTGTAGCTTTTCAAGAGGCgtaacaaatacacaaaaaaaaatagtgccAAAAGTAAGATCTTTAAACAAAGCGACATCCACAACTctccattttcctttttttcctttaaactaCTCAGTGTAAGAATATGGATGTTAAAATCATCCAGTAATTATTGGAAATTATAATATGCAGAATATGCTAGGAGACCAAAGAATGTGCAGGACCtgaaggatttttctgaagaactgCAGACTGTCTTGTGATTTATTAACAACCTTCTCATAACATACGAACAGTCATTGATAATCCAGGTAACACATTATACGaacatataaaaatagtatCTCTTGTTTTGCtaaaattcttaaaatcttGAATATTCATCAAGGGCATGTATACTCGTGAGTGGAGCTAAATATGATTGATATTAAAAGCGGCAATGGTAATAATAAGGCTCCTTAGTTCAATAAGATTTAAATTAAAGGCAATTTATTAAGCCCTCATTTGCTTACAGTTTTCAAAACTACTCGGATGATATCTAATAAAGCAATTTGATGTGATTAAGTGATAATTTCTGTTACAGCTTAATTGAGGgacctaaaaaataaataataaaaataaaaacgaataatCCTTATAATGAGATACTAGCGCCAGgaagcattaaaacaaaaggtCCGGTGCTAGGATGTACCCGTGTGGTCAATGTATTATGTCTGTTTAGAACTCttcaacaacattttcattttctttaagtATCTTTGGATAATAGACATCTGCCCAGAACAAAGTGTAACGTATAAGCCTGTGACATATGTTGTTCTTTCCTCTTTTACTAAGGTTCTTCCCTGATCTGACCCTCTCCTTTAATAAATCCACATCTTCATTTATCCTACCATCTGTCACAGGGATCTCTTACTCATTTCTGCTTTATATAATTTTCTCAATTTCATTCTCATCCCTAAAGATTTCTTGTGGTTACCGATCCCCGTTTGCCCTTCATAAACCACCTCTGCCTTCACTTTGAGTAGCATGTTGGACCACATGCCCAGACGCTCTCGCTCCCTGCTCTCTCTTTTCCTGACCTCCCTCGCCCTGGCGTTATCTGTGCTGGCTTTCTGTACGTCTTACTGGTGTGAAGGAACGCACAAAGTGGTCAAACCTCTCTGCCTGTCACCTGTCAAGATGAAGAACTGCGGCCAGAACAACAGTGAACCTTACACTACAGAAAGCCCCACCTCGGATCCCAGGAACCCGTTACCAACATTATCACCAAAACGAAGGGAGGAACTAGCCAGGATTCGACAAAGACAACTGGCCAATGCAGTGCACTACATTTGGGAGACGGGAGAAGACAAGTATACCTTTAGATATTTCCACACGGGATTTTGGGAGTCCTGTGAAAAACATGCTGATGGTGAAAGATGTCGTCGGTTCTTGGATCTTACTCCTGGAGAGACTCATGGTGTGCTGTGGTTGTCAATGATCGCTGAGTTCATGTACATCAGTTTGCTGGGCATGGGCTTTCTTCTCATGTGGGTGGAAGTGTTGTGTGCTCACAAAGAAATGCACGCACTCAAAATCAACGCTTTCGCAGCCATTTGCACAGTGCTCTCAGgGCTGTTAGGGATGGTGGCTCATATGATGTACACCACCGTATTTCAGCTAACTGTGATTGTGGGTCCCAAAGACTGGAGACCTCAAACGTGGGACTACGGCTGGTCATTCGCGCTTGCATGGGTGTCTTTCAGCTGCTGCATGGGTGCTGCGGTTATGACCCTTAATTCTTACACGAAAACGGTCATTGAGCTACGTCACCGCCAGAGGCTTCGATTAGAGGAGGCCCGTGCTACAAGCCACGCCCCGTCCTACGATGAGGTGGTCCCAGGTGGAGGGCTGTACTCCGTCAGCGGCTTACTACAGTGTCCGAATGGGATGATAGACTCTATGTGGGCATCCAATGGGAGCATGGGACTGGTGCAAGAGAGGGATGTGCCCACCCTGGTACTGGTTGGAGGATGCGGGCAAGATTCGTGTGAGgactgtgagagagagatggatgagaTGAAGGAGGTCATGAATGGAATAGATTCTCCTTGTTAATCTTGGATGATGAGTTGAGGGgctagttcacacaaaaatgtgttatttggtCCCCatcgtgtcatttcaaacccataTGGCTTTCTTTTGTCTGTGTAACACAATAGAAAATAACTTGAAGAAGGGTAGATCCAATATACTGTTTGTCTACATCAAATTGTGTCTTGTTTGTAAACAGATTCTAAATTCTGGAGCATCTTTATCGTTTGGAGAGTTTTTCTGCTCTCGTTATTTACTCTTCATGTGCAAattggtgggcggggctaaacaggcagtgatgtagaagcaggcgTTGATCTTCTGCAGGGGCGGGGTTTGCTGCACTATTACATCATAAAGTGACACGCGCTGTCATTACGACTGGTTTcaatataagctgtttttagactaactaggaagttttgagttctgaaattTATAGGATGCTTTTATAGTACGATGACCTCTTATATGTCAAAAGATTAAGGGATTttgatttctcagttcatgacccaTTTCATATCTTCTGTtatgctccacagaagaaagaaagacatacaggtttggaacgactcGAGAGTGGGTAAATGGTGACCGAATTTTCGTTTTAATGGAATAtctaattagtttttataaCAATGGCCTTGTATGTTTTGTCTGCCTGATTAACTGAGTGACTAGCAAAAACTGTCTATGCAAAATGTCTTTAtagatggtttttttttttaggtatgtCTGTGGCTGAAATTCAGTCAGTGTGTGATATTGAGTGAGTGGATTTTCAAGTGTGAGGATTTAGGAAAATGCCATTTATATATTGGAAGGTATTTGAGTGGATTACACTGAGATTTTGTCAGATCACAAAGCCTGTATTATTTGCATGTTATATTgtaactaaaaacattttctgtaatatctcatattttcttctgtattgtattgtatgttttatttggttAAGAATGGACACCCAAAccataatcattaaataaaataataatgtaaatactaatgtaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165647 lncRNA downstream 110518 13024933 ~ 13026129 (-) True G112229
TU165121 lncRNA downstream 484241 12567205 ~ 12652406 (-) True G111862
TU165120 lncRNA downstream 512028 12567205 ~ 12624619 (-) False G111862
TU165116 lncRNA downstream 524653 12557811 ~ 12611994 (-) True G111860
TU165016 lncRNA downstream 646527 12489782 ~ 12490120 (-) True G111799
TU165679 lncRNA upstream 44008 13187919 ~ 13200640 (-) False G112256
TU165680 lncRNA upstream 52967 13196878 ~ 13200640 (-) True G112256
TU165691 lncRNA upstream 70019 13213930 ~ 13227818 (-) True G112261
TU165689 lncRNA upstream 73292 13217203 ~ 13249624 (-) True G112260
TU165746 lncRNA upstream 145294 13289205 ~ 13292423 (-) True G112299
XM_043260184.1 mRNA downstream 10445 13124348 ~ 13126202 (-) True LOC122359945
XM_043260183.1 mRNA downstream 12760 13120866 ~ 13123887 (-) True LOC122359944
XM_043260525.1 mRNA downstream 16774 13116477 ~ 13119873 (-) True fdps
XM_043260521.1 mRNA downstream 20552 13100858 ~ 13116095 (-) False rusc1
XM_043262033.1 mRNA upstream 138 13144049 ~ 13146414 (-) True atg12
XM_043261054.1 mRNA upstream 8438 13152349 ~ 13157873 (-) True grwd1
XM_043261899.1 mRNA upstream 14891 13158802 ~ 13162784 (-) False zgc:174888
XM_043261898.1 mRNA upstream 14891 13158802 ~ 13162784 (-) True zgc:174888
XM_043261894.1 mRNA upstream 19019 13162930 ~ 13170984 (-) True flcn
TU164609 other downstream 1724870 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1850215 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2253436 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2270219 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2388347 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 510149 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1090643 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1765414 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2324569 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2324569 15468480 ~ 15496375 (-) False rps19

Expression Profile