RNA id: XM_043262037.1


Basic Information

Item Value
RNA id XM_043262037.1
length 2883
RNA type mRNA
GC content 0.37
exon number 6
gene id si:ch211-135n15.2
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20260835 ~ 20264890 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGATGCCTAGACGCAACGGTGTGACCAGCATTCTGCAGCAGTCAGTGTCACCTTTTGATCAGCGTGTGGCGTCTAAATTCCTGAAGATCAGGCCAAAGATTCTGGGGGTTTTGGAAATATCAATAGGTATAACTATGTTGATCTTAACAATCTGGACGGGATTTTTATATCTCCTCTGGTCATGTTTAATTTCGATTTTAACCGGATCTGTGACTGTGTCAGCTGCATGTACACGTAACACGTGTCAGGTCAGAATCTCACAATTTCTTAACTGTTTCAGTGCCATAGCAGCTGCTATTTCCATCCCATTTCACTGTCTTGACAGTGATGGCGTGACTCTAGTTCTCCTGGTTTTCTGTGATGCTCTGGTCTTCATCATCTCTGTTATTGTTGCATCGTCTTCCTGTGACTGCTGCAGGATGAAGTCAAGAGATGTTGCAGTCAGTTACATAAACCGAGATGTGCCTTACATGACTGACAGCAATATTGTGCAACCAGGCCCTTTTGCACCTCCACCAAACTACGATACAAGTCCTTTAGAGCCTCCACCAAAATACCATCCAACTCCTCTTGAACCTCCACCAAAATACTATCCATGTCCTACACATCAAGCAAACTCAACACCGCCACCAAACAGTTATACAAGTCCCCTCCACTGAGTTATGATCCCTACTATTAGGGATCTATTAACTATTAGGTAATTAACAGTTTGCATTTTCGCAACAGAGCATATTTCAAGCTTCTTACTTTCTggatataatttatattgttcAAAGACACTCTCTTAAAAAATGTGCGTTTcatattttgaacatttgtttGTGTTACCTCATATGCATCCTTTATATGTGCACAAGTTGCTTTTATAACCTTAAATGTGCACACTTCACAGAAACTAGCATTAGAGATTATATACTGTAATGTTAAACACATTACTACAATTATtagatgtatgtatgtacaagAAGGCAAGATATTAGTCATCATGAAACAAAATAGTCTCTGCCAGCTCATTCAAGTGTTCGGTATTTTATCAAAATAGCAGATATGACCTGTGTTATAAAGATACATAATGTTGCAAATATTGTAGACTACTTGCCTACATATCCCAGATGTTTTAGAaagattcattttcaaaacctcTTGTCGAGTCACAGGGATATTGGAAATGTGTCACAAAGAACACAATAAAATTCAGTGGGGTTCAGGTAACATCagtcttaaatgtttaataacacAGACCACAGATTGATGTGGAGTCTCACCGGATGTAACGCGTAAATCATATTGCATGCACTTGTTTTTTACAGAAAGGCTGTGTTAAATATTGTAGCTTGGACCGTGTGAATGGCTGTGTTTACAGACGTTTATGAAATTGACAATTTAAGCATTCAGAAACAAAGCATCTTTCCAAATGTAATCACGTGCACCGTGTTGGCTTCACAAACAGATGGATGGAGGAGGCCTTCTTGCTGTGATCACTACCACCAACAGCAGCAGAAACATTCTGCTTAAACACTAGGCTACTTAGGAGCTGGAGTCTGAGATCTTTCCAAGTATTGTATTAGACAACAGTAATGTTGCTTGTCCACAAattacaactatatatatatatagagagagagagagagagagagaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagcgagagagcttTCCATGTAGGATAAATCAAGTAAATCAAGGTCTTTCAGCTCCAATGTGAAAAGTGACTTTTGTGTTAAATTTTTATGTGGCTGACAGTGAAGAGAAAAGCATGTTATTAATGgctgaaaatgaagaaaataaaaatgtatatgcttaTTTGTAAGTCCTTGTTAAGTGTATTACATCTAACTAAATTCCCATCTCAATCCCAACACATATTTGTCTCAGTACATCTAAATATGCCTAAACACGATCATGAGGCCAGCTCTTTTCAGCAGCCAGCATCACCGTTATAGCCAGATATCACCAGTATGTGATATCTAAATTCCTTGAAGATCAGACCGCAGGTCCTCGGGGGAAAGCAAACTGTCCCGCTTCTAATTTGTTCCTGTTGATACCGATGTTGGGGTAACAAGAAAACGTTCACcatcttgttttatgttttacagagTTTGGAAATGGTACTAGGCATAGTGGTGTTTGCCTTAGCGATCTGAAAAGGGTTTGTGGGCTTCTATCATTGTAAGTCTTTAGTTTCAGTATGAGAGCAATATTCTGCATCGAGCAAATAttgaattgtatatttttttctcccctgCAGTCAATTTAATTGGATCTTTGACTGCATTAGCTGCACACAAACGTAATATACAATGggtttgtttgaatattttgcatttcattttactaGAATGAGATTAATAACATCAGAAAAcgacattatattttatagatatttagctaaagagtttttattttctcagacCAGAGCCTCATAGTCTCTAAACTACCTCAACGTCATAGCATCTATTTTCTCCATCCCATTTCATGGGTTTGCAAATGATGTAAATATATAGATTTcctgttttaaatgcatctgcaaaaatcatttactcCACAAGATCATGCGGATTAACGTTGGTTAGTATTAAATGCATTAGTAACAATAACTTACACTGAATAATTATTCATGCTTAATCTCTCTAATACTGTTTATATGCCTTTTGaaatttattacaatttctcaaataaaaataattgtagcTAATGTTGGTTTGATTTTTATGGTTTATGGGGGcgcaaattattttaatgacagtggtatgacagaggtactacaatttgaaggtggtttatgaggacactgccaatgtccccataattcaaaaggtttgcaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169418 lncRNA downstream 15596 20245021 ~ 20245239 (-) True G114747
TU169376 lncRNA downstream 16682 20174163 ~ 20244153 (-) True G114718
TU169402 lncRNA downstream 43254 20216103 ~ 20217581 (-) True G114741
TU169371 lncRNA downstream 83077 20166795 ~ 20177758 (-) True G114715
TU169265 lncRNA downstream 156565 20101044 ~ 20104270 (-) True G114663
TU169450 lncRNA upstream 38093 20302983 ~ 20305444 (-) True G114768
TU169443 lncRNA upstream 38431 20303321 ~ 20305444 (-) False G114768
TU169455 lncRNA upstream 77187 20342077 ~ 20409610 (-) True G114771
TU169494 lncRNA upstream 210627 20475517 ~ 20475747 (-) True G114798
TU169497 lncRNA upstream 218911 20483801 ~ 20484071 (-) True G114801
XM_043260246.1 mRNA downstream 17270 20239132 ~ 20243565 (-) True polr3glb
XM_043261110.1 mRNA downstream 106187 20139412 ~ 20154648 (-) True rundc3b
XM_043261109.1 mRNA downstream 126894 20129043 ~ 20133941 (-) True dbf4
XM_043260790.1 mRNA downstream 132872 20076807 ~ 20127963 (-) True adam22
XM_043260791.1 mRNA downstream 132875 20076807 ~ 20127960 (-) False adam22
XM_043260152.1 mRNA upstream 40928 20305818 ~ 20313239 (-) False dpy19l1l
XM_043260151.1 mRNA upstream 40928 20305818 ~ 20313239 (-) True dpy19l1l
XM_043261880.1 mRNA upstream 114290 20379180 ~ 20385456 (-) False herpud2
XM_043261881.1 mRNA upstream 114290 20379180 ~ 20385291 (-) True herpud2
XM_043260302.1 mRNA upstream 121187 20386077 ~ 20387616 (-) True pkdc
TU169372 other downstream 93221 20166795 ~ 20167614 (-) False G114715
XR_006252818.1 other downstream 839741 19416962 ~ 19421094 (-) False cd22
TU168710 other downstream 1439747 18815216 ~ 18821088 (-) True rpz
TU169487 other upstream 177075 20441965 ~ 20452450 (-) False G114793
TU169489 other upstream 177075 20441965 ~ 20452450 (-) True G114793
TU169673 other upstream 387087 20651977 ~ 20653574 (-) True G114901
TU169801 other upstream 747717 21012607 ~ 21017105 (-) True G115003
TU169949 other upstream 1111000 21375890 ~ 21378836 (-) True G115093

Expression Profile