RNA id: XM_043262040.1


Basic Information

Item Value
RNA id XM_043262040.1
length 8713
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC122361084
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26134248 ~ 26173373 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAATCAGCGCGCGGCTCTCGCGGCAGGTCCGTGCGTCGCGCTCGCGGAGGATCAGACGCTCCATATTTAGCCGAAGCGAGTCTCGCGGAGGCTCTGTCAGAGAAACCCTGCGAGGGAGTCCAGCTCCCAACTTATCCCGTGTCACCGCCGGCGCAAAACGTCGGGAACACGCGCCGTCGACGAGCCTCGAGCTTCGAGGACGGGATTCATGGAGGATCGGGGACTTTCGCGGATTTTTCCCCTCACAGATGGGAACGTAGCTTAGCTGGTTAGCCTGGCCGCTAGCAGTAGCAGGCTAGCTGTGTCGAAGAGCGGAGGCGACATAAGTTGACTTTTACTCGCCGTAACGTCATAACACCTCAACAACCCGCCTCGGTCTTTCCAAAGACGCGTTTCTGAAGGCGTCGCCGTCACAGAAACAGCGTTTCGGGACTGTATTCAGGGGAACTTCTCGTCTTAGCTGGCTGGCTAGCTGGCCGTCACGTCAATCTGTCAACCGAACCAGAAATCCAGACCGGATAGTTCGCGCACGGAGGCACCGAACCTCCCCCTCTGCTCTGATACACGAGCTTCTGGGACGCTGGATTAGGAGCCCGTGAACCGGGAGGAGACGCTCGCGTTGGGTTAACGGAACCGCAGAGTTTCTGAAGTTCGTCTACTGCGAGCCGGGGACGGAACCGGACAGAGACCTCATGAATGGAAATCGGAactacagGAGCCGTTGGGGCCCAGGCCCTGTTCTCCGTGCCACGGAGGCCCGGCTATGGCACCGTGGGGAAACCCATCAAGCTGCTGGCCAACTGCTTCCAGGTGGAGATCCCCAAGATGGACGTCTACCTGTATGAGGTGGACATCAAGCCTGAGAAGTGTCCACGCCGCGTGAACAGGGAGGTTGTGGACTCCATGGTGCAGCACTTTAAAGTCACCATCTTTGGGGATCGAAGGCCAGTTTATGATGGGAAGAAGAGCCTCTACACCGCCAACCCACTGCCTGTGGCGCCTGCGGGGGTGGATCTGGACGTTACGCTGCCAGGGAAGGGGGGTAAAGACCGACCCTTTAAAGTCAGTATTAAATTCGTGTCCCTGGTGAGCTGGCACCTGTTGCACGAGGTACTCACCGGTCGCAGTATGCCAGAGCCGCTGGAGCTGGACAAGCCAATCAGCACCAACCCGGTTCACGCTGTGGACGTGGTTCTACGCCATCTCCCCTCCATGAAgTACACTCCCGTGGGCCGCTCGTTCTTCTCCGCCCCGGAGGGCTACGACCATCCTCTGGGTGGAGGAAGAGAGGTCTGGTTCGGCTTCCACCAGTCTGTTCGTCCGGCCATGTGGAAGATGATGCTCAACAtcgacgTGTCAGCCACGGCTTTCTACAAAGCACAGCCAGTTATTCAGTTCATGTGTGAGGTACTGGACATCCACAACATCGACGAGCAGCCTCGTCCCCTCACCGACTCCCACCGAGTCAAATTCACCAAAGAAATCAAAGGTCTGAAGGTGGAGGTGACACACTGCGGAACCATGCGGAGGAAGTACCGGGTCTGCAATGTGACCCGCCGCCCCGCCAGCCACCAAACGTTCCCTTTGCAGTTGGAGAACGGCCAAACTGTAGAACGAACAGTAGCTCAGTATTTCAGAGAGAAGTACAACCTGCAGCTCAAATACCCCCACCTGCCCTGCCTGCAGGTGGGCCAGGAGCAGAAACACACCTACCTGCCCCTGGAGGTGTGCAATATCGTAGCAGGGCAGCGGTGCATCAAGAAACTGACAGATAATCAGACCTCCACCATGATCAAAGCCACAGCTCGATCGGCACCAGACAGACAGGAGGAGATCAGCAGACTGGTGCGCAGCGCTAACTACGAAGCAGACCCGTTTGTGCAGGAGTTCCAGTTCAAGGTGCGAGACGAGATGGCCCACGTGACGGGGCGCGTGTTGCCTGCGCCCATGCTGCAGTACGGGGGCAGGGTGAGCACAGAGCACTTTATGCAGATCAACCGTGAGCTGTCGTTACAGAACCGCACTGTAGCCACACCCAGCCATGGAGTTTGGGACATGAGAGGGAAACAGTTTCACACCGGCGTGGAGATCAAGATGTGGGCCATCGCCTGCTTCGCCACACAGAGACAGTGCAGAGAAGAGATCCTCAAGGGTTTCACGGACCAGCTGCGTAAGATCTCGAAGGACGCTGGGATGCCGATCCAGGGTCAGCCGTGTTTCTGTAAGTACGCACAGGGAGCAGACAGCGTGGAGCCCATGTTCAGACACCTGAAGAACACCTACTCCGGCCTGCAGCTCATCATCGTCATCCTGCCCGGAAAAACACCCGTCTACGCCGAGGTGAAGCGCGTGGGAGACACTCTTCTAGGGATGGCCACTCAGTGTGTTCAGGTGAAGAACGTGGTGAAGACCTCGCCTCAGACGCTCTCCAACCTCTGCCTCAAAATCAACGTCAAACTCGGCGGCATCAACAACATCCTGGTTCCGCATCAACGGCCGTCTGTGTTTCAGCAGCCAGTCATCTTTCTGGGGGCGGATGTGACGCATCCACCTGCAGGAGACGGAAAGAAACCCTCCATTGCAGCGgtggtgGGCAGTATGGACGCTCATCCCAGCAGGTATTGCGCTACAGTACGAGTACAGCGACCCAGGCAGGAGGTGATTCAGGACTTGGCCTCTATGGTGCGAGAGTTACTCATCCAGTTCTACAAGTCCACTCGCTACAAACCCACCAGAATCATCTTCTACAGGGACGGCGTGTCTGAAGGGCAGTTTAGACAGGTTTTGTATTATGAGCTGCTGGCCATCCGAGAGGCCTGTATCAGTCTGGAGAAGGAGTACCAGCCCGGCATCACGTACATAGTGGTGCAGAAACGCCATCACACGCGCCTCTTTTGTGCCGATCGCAACGAGAGGGTTGGTCGCAGCGGAAACATTCCTGCTGGTACGACAGTCGACACGGATATCACACACCCCTACGAGTTTGACTTTTACCTCTGCAGTCATGCTGGAATACAGGGCACTAGCCGACCCTCTCACTACCACGTCCTTTGGGACGACAACTGCTTCACTGCTGACGAGTTCCAGCTGCTCACTTACCAGTTGTGCCACACGTATGTGCGCTGTACCCGCTCCGTCTCCATCCCCGCGCCAGCCTACTACGCCCACCTGGTGGCCTTCCGTGCGAGATACCACTTGGTGGACAAAGAACACGACAGCGCCGAGGGCAGCCACGTCTCCGGGCAGAGTAACGGCCGGGATCCCCAGGCGCTGGCCAAAGCCGTGCAGATTCACCACGACACCCTGAGGACCATGTACTTTGCCTAAGCCGGCTCACGTCCATCCCACGTTCGACTAGTCACGCACACAAACCCGACAACCGCACACACACGCCGTCACGCCTCCCAAAAGCCTGTGCGTCCTGTGGGTCGATCTCCGTGGCGACGGCCCGCCCCGACACTGTGCAGCAGGACGAGGAAGGCCTGCTTTAATTCCACACGTGGACCTCGGCGCTATTATGCAATATTAAACCAGCCGACTGAGGCCGTTCTGTCACATCCCCTCCAAAAACCCAAACCAAAAGGGAAGCCCGTCTGTGTCCCCTCTCCTCTTCCCGTCTGTGCGTGTCACGTTTAATTACTTCCCCTGCCCGTCACGCCTTGTACCTCAACGTTTTCTAACAGCACTTTTTGGCCCCTCATCGTCCTTCCCCCCCAAAAAGAGATTGAAACGTAAGACTGAGTGCGGAAGAAAGGAAGCTTCGGGGAACGCCTGCGGATAGCAACGTACTTTCCTCCCGTTCTCAATTATTTTTGTAGCCAATGGTGACTTAACTACGTGTTAAAGTGTCAGTCGTGAAGAACCAATTGTGCGTTAGcgttttaaaacagaaaaacaagcttttattGTTAGAGAAGTGCCATTGCCGAGTGTAAAGCAGAAGGCTGACCGgtcggtttttattttttgttttaagcaaacGTACGCTCTAGCTTTCATGTGCTTTCGAAGCCTTTTTCTCGTTTTGAATTCCCTCCGATATTTATTCGCCTCGATCGAACGCAGCTCCTCTCCACTCGTCTCGTCCGCTTCCCTCCCGCGCTTTGCCTCGATTTGAATCTTTGTCACGTGACTGATCGCGCGTAGTTTAGTGCAATAATCCATAAAGCGGGATGAGAATACCTCCTGTGCAAAGACTGAggggggtgaaaaaaaaaaggtatccGAAAGCGTGCGATGGGCATTGCGgtcgtttttgttgttgttttttgtttttgttttttaagacgGAGGCACTTTTCTAGTTAATCGCAGCGTCTCCCGACGATTGATGGACTGTGGCGTGTTAACAAGTGCCTGCTAGAAACGCGTGATGTTGGGAGGTACCCCGAACAAGGGCACAGTTGCGACTGCACGgccttaaaaaggaaaaaaaaaaaaatatttcagcgCCTCGATTTTTCACTGCCCTGTTTCAGAGGGTTTCGCTGCTGTTGTATTTGTCCGAGTTTGACCGGCGGGATCGAGAGGCTGACCGGGCCTTCGAGGAGAAGCTTTGTGCTCGTGCGCTGGAGGGCCGCTAGGGGTCAGCGTAGCGTTTTACTTGAAGGGTGCAGTGAGCGTCGGGTGCCTTACCGTCTCTCCGTGCGCATGTCCCGCTGTTTAAAGGTGATAATCTGCACTAAATAATGCGTAATGCATGGTGCTATTAGGTGCGGCCCGTGGCGACCGGCAGAGACTTCATGCGCGAGATGGGACACGGGATGCATAAACGGTGCTGGTTGCATGCATTTCTCTCACTCCGAGGAGAAACCTCTCATCAGGACAGACATTCGGTCGTTTTGTATGCATGTTTGTCTGTTAGGTTTGCGTTTGATTTTACTGGGTAGGAAGGTACAGCACTAGAAAGCGGACGATTTGAACGCGTAACTTTTTTTGGGGGTGGGGTAAAATAACAATTTCGGTCCCTTTGAAATCCAGAATGCAGTTCACGCTATCCGGCGaactctaaaatataaataaccgAGTGAAACGAACGCAGTAGGCTGTCGTGATgggtttctgtgtgttttttttgttgtgttttgaagGTACACCGTGTCTTATGCCCGTCAAAAGCGGTTTAAGTGAGCATCGATACAGCAGCTACTGAAATTGTgagctttttgtgtttttttttttttttttgttttaccttcCCAAATGAAACGGCTTATTGGTGCTTCAGAGCCTTGGAAGTAAGCGTCTGCGTGTGGATGCCAAACAGCTGTCCGTTTCAGAAGCAATCTTGATGAGGTGTCatgcaattttatttctgtgtagtTTTAAActtcatacatatacatatacatacgtatatgTAACCCTTGCCTCTTATTTTGGCAAGAAATGtctctttaaaggaatagtttggtTGTAAATGATCATGCATTGTCATTTTTACCCACAGACGTTTCAAACttgcatgctattttttttttttgctgcaaatAAGATTTCAGtgagttttaaaaacaatgcgagttgttggtttttttttttttatgcaacaaaGTGAACGGATATCTGTGGCTATTAAAGTCAAGTTACGGCTCGTGATTAAAAATCGGTCCATTTTTGTTTCAGCAGCTTTCGGCGAAAACAAAACAAGGGTGTGAAAACCATTACGCTATTTTCATTTGCCGCCCGACGATTCCTTTAAAGCTCATCTTTAACTCCGGAGATCGTAACGAGCTTCTTGTCTTGTACCCGTGGCAGCAGGTGTCGTGGGCTCGTAGCACACTTACCGAGCTCGTCGCCTGACGTGGCTTCCGTTGTTCAGAAAGAGTCGATGTACTTTCTCCTCTCGTCTCGTCCTTTGTGTTAGAGCTTTCGGGAGGGTCTTCTTTTAGGGTCTAAAACGTAACGCGAGTTCAAAGTTCATAGAAAGTGCCTTTCCTCATGATGGTGCTGAATAATCTGAGACTAAAGTGAGAAATCAAAGAGCATGTTAGTCTTACTCTTACCTTGAAGAAGGTGTtgcacacacgcaaacacacacacacacacacgtttttatCTCGATCGGGATCGCCTCTTTGTATATTCAGATATTATAACGACGACGATATATGCCAAGTATACGAGCAAACGGTTGAGATGCTGTATTAGGAGTCCGGACCAATGCAGCGGAAGCTGTAGGTGAATGTGCTGTGTTTAGACGGGGCAGAGTGGACGCACTCGTATGACGCGGCCTGACCCCGGACACGAAAGCCTAGCACAGCACTTTAAAGACTGCCACCCAAACGAGGAACCGAAGCCACCGAGCTTTGCTCTCCTTTTTCCTCCCGCCCCGTAAGCCCCCGTTGTCACGCGCTCCAGCAGAAGACGGTCTCGACATCTTCGCCCGAGGGAAGGCTAATGGCGTTCCGAAGGTTTACGCGGATCGATCCCTCTCAATGTGCAATGGCCCGTAGAAACCCAGACGCGTACAGTACGTGTTTTGTCGCCGGAGGGGGGCGCCCGTTGGTCCGGGAGGATATACCTCGACGAGAGATCTCAAAACACTGCACCTCACTTACCTTGGTATGCTGCATATGTTATTAGTGAAAGAAACCTCAAGCGGACGGATCTCATTGAAGAACGCGTTCGCTTTTCACCAGTTCTATTCTGCGCGAGGAAAGTCGAGCAGCGTTGTCAATAGCAGTTGCGTCGCTTTATGCCCCCGGTCGTTCTGTCGCCGCTGGGAATTACGAAACGCCTCAAAACCTGGAGGTCGACGTGTTAAAAGAGCAACCAAAATCAAGCACGCTTCGTTTTTTCTTGCGCAAAATACAATCGGTAATTGTGCCGCACTCCAACGAAGCGACTGAAATCATCTAGTATATTTTGCACGAAGAACATAAAGCCTTTTTTGCGACTATTTTTTGACACGGTCTCCCTCTCAAAGTTTACTCTAATATATCGGCTCACGATAGTGCTGTATTTGTGGCGTCGCTTTCGCTTGGCGTTTATTAGTCGATATCATTCTGGCACCATTTAGAATAAcagaaatgactaaataaatgcttaattgtcatgggaaaaaaaatgcaataattgcATGGGCTTCGTTTCTGTCATGCAGAATGTAATTTCCAGTGAACTACACACCAACAACACGATCCAAATGAtgggaaattatattttgcattaagaaAACGAAGCCTGTTTTCGGACCGCTGCGTCCTTCAGTATATTTTTAGGCGCCGCGACTTTATTTTAACGACAGCTAAACGCATCCTCCCGCTCTAAATTCTCGTCGCGACgccaaaaaaactatttaggGAAAGCAATGGTCATTAAAACGACGTCAAAAATACTGGTCGTCAAAACAGGCTTCATTGTCCTCATGCAAAGTATTTATTAGTTTCGGAGGTGGATGTGTTTTCTTGAGATTCGCCCAgatattattttgattacagTATAACGCTTGACTAATGCCTGACAACAATATCCTTAACAATTTTAGAGTAAGAAGTCTAactgtaagagagagagaaaaaaaaaaaattgtttttaaatcataacacgtatctttttcttcttttattgagccaacttttattttgttgttctatttaaatgttttgttttttttttcttttaatatattggAAATATATATGGGAAATATTTAACGGTGTATTTATTGAGGGAGTGCTTACGCGGCTGGAGTCTCCGCAGAGTCATGGGGGGCGAGTTTGGGGGTCGGGGGTCAACCCTCGACgtccacccacacacacacacacacacacacacacgcaagcacAAGCACAGAGCGGGCTGAAGTGTCCGATGACGTCACTTCCTCCTCGACCTTTGACTAGTGGTCCGTCGAGGCGGTCCAGCGAAGAGGCTCGTCTCGTCTCGTCACGGGACGGAGAACCACACTGACTTtgttattccaaaaaaaaagaagagagaacaaGCCGATCGTTTTCATCCAGAGCTGCTAAACTCTTAGCCATACACGTTTTTTCCCTGGAAGGATGTGTCCGGTGCTTTACGAAGCAGATCATGGTATTCGTCCTTCGTCGTTTGCTTGAGTTCAATTGTCTTCGTGCCAGAGAGGGTCCCATTCCACtcagatataatatatatatatataaatatatgagcCTCAGCCTTAACTGTACTCTTGTTTTTCCGATTCGACTTGAGACGTCCGTCGTGCGTAGAGGAGCGTATTAACCGAGGCACCTCGGTTCTCTCATAAACCACTAGCTGTCGCGAGGCGCCGTCCGTCTTTCGAAGCGCTCCCGTCGTCGTTTTCCAGGAGGACAGAGGCATCGAGCGCCGGGGCGAAGCCGCCGACCGATTCGAGTCGATtcctaaaaatgtttacaaaacgGTTTACTGCAACGCAAAAGCTCCAGcattccaaaaacaaaaaaaaaaaacacggacTGTGAACCCCTCCGATGCAAGTCTGTCCATCCTCCGTTTCCGCTCGTCCGCGCTTGAGTTGAGCCGTAGAGACCTCTGTGGCTCTGtcctcccatctctctctctctccgtgttCGCAAAGAGTCTCTCTAATGTACCAAGGGATGTTTCTTTTCCTTTgaaatgtctttctttgtttaataataCTCTCTTTGTAGATCAATGGCCTTTTAGTGTTGCTTTGCTTCAGTTTGGAGTGTATCTTTCACTAATACTTGCAATAAAAAGCTTTGCTTTTGAAACACA

Function

GO:

id name namespace
GO:0072091 regulation of stem cell proliferation biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0016442 RISC complex cellular_component
GO:0000932 P-body cellular_component
GO:0035198 miRNA binding molecular_function

KEGG:

id description
K11593 ELF2C, AGO; eukaryotic translation initiation factor 2C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171807 lncRNA downstream 3442 26130280 ~ 26130806 (-) True G116360
TU171803 lncRNA downstream 5622 26071160 ~ 26128626 (-) True G116359
TU171795 lncRNA downstream 61242 26020525 ~ 26073006 (-) True G116351
TU171793 lncRNA downstream 64714 26062291 ~ 26069534 (-) True G116350
TU171682 lncRNA downstream 355844 25777832 ~ 25778404 (-) False G116282
TU171824 lncRNA upstream 41675 26215048 ~ 26230073 (-) True G116368
TU172227 lncRNA upstream 212425 26385798 ~ 26386007 (-) True G116611
TU172236 lncRNA upstream 248345 26421718 ~ 26483705 (-) False LOC122360302
TU172235 lncRNA upstream 306150 26479523 ~ 26483705 (-) False LOC122360302
TU172267 lncRNA upstream 446917 26620290 ~ 26678901 (-) False G116633
XM_043260354.1 mRNA downstream 13508 26107869 ~ 26120740 (-) False si:dkeyp-97a10.3
XM_043260353.1 mRNA downstream 13508 26107869 ~ 26120740 (-) True si:dkeyp-97a10.3
XM_043260360.1 mRNA downstream 26494 26103544 ~ 26107754 (-) True LOC122360053
XM_043260359.1 mRNA downstream 37339 26091378 ~ 26096909 (-) False si:ch73-90p23.1
XM_043262044.1 mRNA upstream 3759 26177132 ~ 26204649 (-) True ago1
XM_043261370.1 mRNA upstream 67407 26240780 ~ 26246320 (-) True LOC122360601
XM_043261373.1 mRNA upstream 76719 26250092 ~ 26251859 (-) True LOC122360605
XM_043261371.1 mRNA upstream 86603 26259976 ~ 26263633 (-) True LOC122360602
XM_043261372.1 mRNA upstream 91371 26264744 ~ 26267349 (-) True LOC122360603
TU171647 other downstream 457838 25667819 ~ 25676410 (-) False LOC122361130
TU171232 other downstream 1806275 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 2458950 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 2524407 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 2609866 23519808 ~ 23524382 (-) True G115882
TU172219 other upstream 206299 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 633747 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 636944 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 636944 26810317 ~ 26812909 (-) False G116632
TU172263 other upstream 636944 26810317 ~ 26812974 (-) False G116632

Expression Profile