RNA id: XM_043262066.1


Basic Information

Item Value
RNA id XM_043262066.1
length 9117
RNA type mRNA
GC content 0.44
exon number 11
gene id shc1
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14927037 ~ 14957235 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagcgagagagagagagagcatgataGACCAGACAGGGAGGAGAGGAGAATAGAGGACAGTCGGCTACATCGCTCCTCACACACAGACGGAggtggagagaggagaggatgAGAGACTGTGGGGGAAGGAGAGGACAAAAGAAGACCGCTGTGCTCTTCATCACGCCGTTCCAAAGAAGTGAGGCTGGACAAGACTGATGCTGAACGAGGGAGCCGGCGTGACTTTGTGATTTTGAAGAGAACAGAAGAAAAGGATAAAAGAAAAGAGCACGATTTTGTCTTTCAGGGAGGGGACTGAGCCAGAAAgcaagtgagagagaaagaggagaaggaggaggattGTCTGGCACTGTTTAAATATTAACGTGATTATGATTTGAACATGGAGGTCGTTCGTTTTTACCTAAAATGAgtctctctcgttctcttttTAATCCAAGGACTTAGTGGATGAAATATCGCTCTTACTTTCTGCAGAAACTACACCGTGAGGAcaaaaaaagctctttaaaaCTCTTTCAATTCTTTTACTTTGACTTTTTTGGATAACTTACGAACtcttgtatttttaatgtacataGTGATGTCTGTTAATGAAACCTTGTTTCTGGTGTTACTTAAAAGTTATGCAGACAGAAATCAGGTTTTTTATGCAAAACTTTTAGATGTCTTTCTTTGTAGTGTATAAACCGGTGCTTTCATAGTGATCTGTAGATATTTCATAGATATCAGGACTACTTTTTAGCTTTTGCTAGTTCTGCTGTGTTTAGGCGGAAGTGTGTATGGGTCTgtcttaagtgtgtgtgtgtgtgtgtgtgtgtgtactcgaGCAATATTTGATTTTCTCATTTGGACCGGTGCCACGACTGCGCTCTGTGCATGTGTTCCGATATGCGTCTGGTTCTTTTTGAGTTTGGATGTCATCCCTGATCACCGCTGTGGTGTTTGTGACTGCAGCGGTTGAACTTTCCCGTCGTGTGCCAGCGCTTGCTGCAGAACGTTGATTCACGCTGGCTCCGAGCTCTCGTGATTGGACGGGGAGCGAGCCGACAGGTTTTGTGTTGGCGAAACTTGTCTGCTTTTGTTTGGGTTCTGTCATGACTCTGTCTCGCACGTTTTTTCCTCAGTCTGTTACCATGGCAATCGTTTCATTGGCATGTTAAGTTCTCACGCTTTGTCTTTCGCAGCTTGCAGCGTCCCAAGCTTTAAACCGGACTCTACGTTCGCCAGTATTAAGAATGGGTCGTGCCTTCAAACCTTACAAGGGTTCAAGGTGCTCGCTCTAAATCTTTAGTTCATTCGGTCAGTCTCTAAATCAGAGTTGCCAACGTTGGActtttttccactgaccatCAAAATTATTGATTCATGATGTTTTGTATTGAAGTGGTGTAGTTAAACTCAGGTTTTTCCATCTGTGCTGGAGCTCAACTGCACTAATTCAACATCCAATTTACCTTTAGGACAATGAGATTAGACGTTTCGGCTCACTTTAATCACAAAGACAAGGAGTCTTGCTGTTGTGCTTAAAAACAGTCTCTCTATATGGTTGGTTTACTTGCCTTTGGTTTCATTTCAGACAAAAAGGAACCTCTCAACCTTTAGATACAGTGCAGTCACTGTTGGGTTAGCAACTCATTCACACATGTTTACTggtttctagaaaaaaaaaaaaaaacattatatcaaAACAGGGATTTTGCCATATTTCTAACCGACAGGTGCTACACCCAAGCTAGGTTACCATAGTGTGAAAAACtcgttattatttaaatgtttttttttatagccgGATTTCTACTTCTCTGTACAAGTTCTCTTAAACACTGTGCTATTTCTGTGCCATGTTGTGTTGACGTCAATAAAGTCCATGACAGCGATTTGGTAATACAGCCAAGTCTGGAACACTTCTGTCtaactgcactgtaaaaaaaatatatatatgtatgagcAAAGCTGTTCAGACTATATTGAATACAGTGAGCTCTGCAGCACTAAACTGTGCCATGTTGTTATGATACGGTTTACGAACTTTGTCTCGTAACTTACTGGGCTTTGTCAACCAGGTCTGTGAGGAATCTCTTCATGAGAATGGCCCAATGGCACCGTTAACGTGGCGCTTTGTAGGTGCAGTGGAGTGCACGTAAATCCCTCGGGTCTCTCGGGTCTTGTCGCACTCCAGCCGAGATAATAGGGCCTCCTCGTTGACTGCTCACATCTGTTGGAACAACTTGGGATGTCTCGCATTTGTTCATGCACATCTGAGGCAAGACACCCTGTCTTTTTTGCGGCCCTGAGGCTTTTCTGCGGTGCTAAagagtttaaaaataatcagaaacaCCTGAAAAGACAAGTAAGCCACAACAATAGAATCTCAAGGTGTTTTTGTGGTtgctaatgtaaaatatatgcagtGAAAACCATTGTACATAGAACAAGACTGGATTTGGTTCAGGCCGGCTGGACTTGGCTATAAACTGGCGTTCACAACACCAGTAGAAACTGTTAATGGTCTATAAATGCTAATCATTTGTGAGGTTTAGAGTTACCCTGGTCTGTTAGTTCAGAACTGTTAGAGGTTACAAGACTGTTGCCTCTCTATCAGAGGTTTTAAAGTGCTTTACACCAGGGATGAGCAATGGTGCGGTTAAATTCAGTGTTTGACTTTGCTAAGTGACGTTCAGCGGGTAGGTTTTCACTCAGGAAACAGATCTATAAAGAACTGCTCAATCCAAGACTGTTTGCCtgattttaaggtgtcatttaGGCTAATGAGCAACTGATTGATTTTCCAGTTAGCATCTAACGAGCAGATCTCTGGAGGCGGTACTTCAGATTTGGCCAATCGGGTCTCATTACCGTCACCCTGACAGTGCTGGAACGTGCTTGTTTTAGGAACATCATAGTTCCCTTGCGGCTGGATTGTAACACTTTAACTTCACAGATCACACCAAACAATCAGTGGTTCTCTAAATGGTGCTCGAACCCATGTTATCTTCTATACAGCCATATTTATCTTCGACTTAACTGTTTCAGGGCTTTCTGAGTCTAGTTTGTCCTTTTCTAAATCATATTTCTACAAACTGTTATTTATCAGGGTTATTTCTGTCTGTATAATTGAAGGtgagctcttttttttctgagtttGTTGATTCAGTAAATCAGTGCGCTAATTTGAGGATAGCAAAGAGGCTcaggtgttttgttttagtttttttttttttttttttaaggataatAGGAGTAGCAGGACAGCCTGGAGAACGGGAAAGAAGACGTGGGAGGGGGTGCGGGGGAGCGAGAGATTATCTGGAAGAAGAGAGCGAGTGTGttggagagggagagagagctgGAGAGGCAGAAGctagaggaggagaggaggaacGCTGTGGGATACACGGTGTGGAGGCTGAGGGAGGGATTCCAGGAGAGGAAGGATAGAGAGGAGGATAGACTCAAAGGGACTAGCGCTGAGGGTGCGAAAGCAGCGCAGCCGGAGGTGATCTGGAAAAGacgagaggaagaggaggagaaagataGGGATAGAGCTCGGCTTGGAGACAGAGGTCCCAAAATCATCTGGAGGAGGAGGGAAAGGGAGTGACAGGAAAAGATGAGGATGTGTCAGCGCTTAGCTCTTTCAGATGTGTGACAGAACGTGAGGTGGCAGATTTAGTTTTACGGTACAAATAAACCTGCATGTACTCCGACTTCATGTAATCTAGGTGCTAGATAGTGTACATCAGGTTCcctttttataaattgtatgaAACTAAGTGTTGAATTTAAGTCTGGCTTATTAAATCTGTATAGTATcacatttatacatgcatgatgcttaaaacctgtaaaaataatcattattttacataatgtgttttattgttgacggaaaaattaaatgtttagctGCACTTTAACTTCAGATTTAGCTTAATATtgtatgcataattacatttttaccacaaaaataggatatatttgaataaagtgATGATTAACAGACCTCCTAGAGGTCAACATACCCCTTGTAGATCCctggtgtattttttattttttttttaaacacctgGACTAAATTAAGTCTTTAAACCAAACGTTAAGGATTATGTTGATCGGCGCCAGTCTAATCATCACTGAGCGCAGCAGTTTGAATCATCATTAAATGATCCACATTCACTGGATCGGTACTTTTAGCATTTTCCATCCATCTCTTCCCGCTCTCTTCCTCTTTTGCTCTATCGATCCGTCTGTCTGACGGAAGCCTCCTTTCTCAAAGTCTCAGCTGCAGCTAATAGGCTTTTTATGGGAGTCTGTCAGACAAGAGCTAGTAGAGTGGAGCCCAGCACATGCATAGAGAAATGAACACGCACGTAAACACACTCGCATGCATATAAAACACTATAGTACTCTCACACATCTACTGAGACAGATTGTGTCTGGAGCACTTATATACTATACCAATAACTTCATGACAATCATACTATATTTAGTAATTCGTAGTGTCCTGAGAAGGTCTATGCAGACTTAAGATCTGATGCAAAACCTACGCGCTGTTTATGACAACAGCAGAAATCTTTAGTACTTATTTGCATCTGTCTTTTCGTCTCTTTTCACTTCCTGTTTTTGATACTCTCCCGGACTTGAACGGTCAGCACACTGTCATCTCTCTGGTGCGATGATGAAGGAATCAGTAGATGCGGAGAAAAATAGAACTGTAAAAGACAAGGGAAGACAAGTTATCGATTGTGATAGAGCGACGTGGAGAGACAATTAGAGACGTTTAGTGGACACTGAGACGGCTGAGACACCAATGGAGCTCGTCCCCAAAACCAAATACACGCCCTTCAGGAGCGACTCCTTCAGCTCAACAGACGAGACGGCGTCCAATCCCTCTCTCCCTTCTTCTGCTCCTCTCACCCCACTCACCCCTCCCGGTatccctccttctctctcctcctcctccctcacTCCCATCCTCCCCCCTTCGTCTCCACGGCAGGCTGAAAACAGCCCAACCACCCTCTGCTCCTTCTTCCCCAGGATGGGAGCCCTGCGGTTGGGTGTGTCTTCCAATCTGCTCCCAGGCCTGAAGGCCTCCAGCAGGCCGGCTAATGTGCCAGGTGGTCACAGAGGTTTAGGAGAGTCTCCAGAAGACACCGGGACCTCCTCCGCCgactctcctcctcttcctcctcttcctctcctttcTCTAACAGCCccatctcctcctcctcgtcctccacAGGATATGAACCGGCTGGGCGGGGCCTCGAGGAGGGCCCGTGTGGAAGGGGGCCAGCTCGGCGGAGATGAGTGGACACGGCACGGCTCCTTCGTCAACAAGCCAACCCGAGGCTGGCTGCACTCTGACAATGTGGTCAGCTCCACTGGGGTCTCCTACAATGTCAGGTATATGGGGTGCGTGGAGGTGCTGCAGTCAATGAGAGCGCTGGACTTCAACACCAGAACTCAGGTTACCAGGGAGGCGATATCTGTGGTGTGTGAGGCAGTACCAGGTGCCAAAGGAGCTCAGCGAAGGAGAAAGCCCTCCTCTCGTTGTCTCTCCTCTATTTTAGGGAAGAGTAATCTCCAGTTTGCTGGAATGACAATCAGCCTCACCGTGTCGACCAGCAGCCTGAACCTACTGGCTGTCGACTGCAAACAGGACACAGCAGAGTACGTTGCCTACGTCGCCAAAGACCCTGTCAATCAGAGAGCGTGTCATATCCTGGAATGCTCAGAGGGCTTGGCTCAGGAGGTCATCAGCACCATCGGCCAGGCGTTTGAACTTCGCTTTAAACAGTACCTGAAGAACCCCCCCAAACTGGTTACCCCTCATGATCGgATGGCTCCTTTCGATGGGTCAGCCtgggaggaagaggaagaggaccAGCCTCCACCCCCAGAGGTTCCGTATTACAATAACTTCCCCGGTAAACAGCCTCCCCCTGGAGGCTTGGTTGACATGAGGACCCGTCCTGGACACAGTCCAGGAGCCACGCTGCCGTACGGACAGCCCAGCCAGAACGACATTCACAAGCAGCCTCTGCCTCCTCTACCAGtggGTGTTAAGGAGGGAGGCTTGTTCGACGACCCTTCGTACGTCAATGTGGACAAACCCCGTCTCCCAGCGGCAGCACCCAATGGAAACGCTCACAGAGATGCGTTTGACATGAAGCCATTTGATGCAGCTTTAGGTGTTTCGGGCGCAGTGGCGCCTCCTCTGGCAGAGCTGCTGCAGAACGAGCCCTGGTTCCACGGACCTCTAAGCCGTAGGCAAGCCGAAAGACTCCTGACCAAGGATGGAGACTTCCTGGTGCGGGAGTCAGGCACCACACCAGGCCAGTACGTCCTCACTGGACAGCAAGGCGGCCAACCTAAACACCTGCTTCTGGTGGACCCAGAGGGAGTGGTGCGCACCAAAGACCACCGCTTCGAGAGCGTCAGTCACTTGATTAGTTATCACATGGACAACCGGCTGCCAATCATCTCGGCAGGAAGTGAGGTGTGTCTGCAGCAGCCAGTTGATCGccgtgcttaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaatatttttctccaCTGCacatttaagagaaaaaaaaatcctccctTTCTTACTTTTTTGCCAGACtctattagagaaaaaaaaaccctgtttttCCAACCGGGAGTGTAAGCTAATCATATcttcacagaaacacaaaatttTGTACCGCGTCAACCGCCGGCCGTGAAATTACAAAGCGATGCAATCTTTCTACTCAAGGACTAAAGGACGCGTCGCTTCAAATAAGCGATTACAAAAAGCCGAACGATGAGGCATCTGAAAGAGAAGCATGTGACATCACTTCCCAAACGCGACATCACGTCTTGAATTAAGACTGGGGTGCACCTGTAACCATGGCAACAGGCCCGGGCATTCTTTGAGGCGAGGGTTGACGTGAATGTACTAAAATTGCAGAACCTTTGTAGCACTCTAAAGATTCGCATCTGGTGCAATGGGCGAAATCCAAAGACTCCAGCTTCATGCTGATCGTAGAGCCTTTTGCGGCGGTCGTTTGGAAATCTCGAAAGACTTTGATGAATATGCAAAACTTTTAAGAGAATCCAGAGCTCATTCGGAATATCACCGTCACGTTTTTCCCGCTAATAGAAATCACACAAAATGCCTAATATTCTCAACCTCACAAAAAACCCTTTACAGAATTCCGAGCGTGATCCCCAAGAATAATTGGGAATTTTGGTAATTTGCGAAGACCCCTGAACATATGTGAAAGCTTTAGCAGCACGGGTGCTGTGCGGATTTTTACTTATGCAAATGAGCAGGTGATGTGAGGGACTTACGCTGCCCCGTAatgagagacaaaaaaaactagTAGTCTGTGGGAAAAGGGAACGTTCCCTTTCCACATAACGTCATGTATATCAGCCTGGGATAAAAGGGacgagaagaaaaaataaagtgcaatcaGTGGACATGAGAATAGGACTGAAGGTCTACGGTTTGAGATCTGGTTGAAGCCTTCTTATGATGTCAATTTAACTACGGATTTCTGTATTCGTTGCAATGATGTCATCTCGATCGGCTGGTTTTATTCTGGGAAACGGAGGCTctatttttctttatctttttctcGTGGACATTACTTCTGTTCGCATTGACAATCGATCTTTGTGTGTATCGAGGTGTCAGCTGCTTCTGGAGGATACGATGTGTATTATAAAACATGCGTCCTTTTCAAAGATTCACTATAACCGctttgcatttgaatgacatCGATTGCGAGGGGACACATCCGAGAAGACGGAAAGCACTCCAAATGAATTCTGAACGTGTCTTTGCAGCCACAAGTGCAGTTTCTGTTCAAGCCACAAGCAGGAAACCACTTTCTTCATCTTTGTTTGATCTGATATTgattgtgccttttttttttaccaaacacacacacacacgataaaACACAGTCGCCTTTTGGGATTCTGAAGGTAATCGTGACACTTTCTGTTCTGgaaaaaacacaactgaaaaaGATAATCAACTGCAAAAACGACACGCGTTTGGTGAGGCTCGGTGCAGGTTTTGGGAAAGCAGTCTTCGTTTTCTTCGGCGCGTTAATTCTGCTGTGCTGTTCTTACTGTGCTTAGTTTAGTGCTGGTCTGTGGGTATCGCATTATGTTGCTTAAACGCCTTCCTCTATCTCTCGTTTAGAAATCGACCctgtaaaaaaacatgtaaataagcTTTGCCTATGCTAGTAGCTGTCTAAAAGCAGTCATTCACTGTGTGGATCTGTGTCAAATAGGAATTGTActgggtgaaaaaaaacaaaaaaaacataaaggtGTAAGATTTGACATGCTCCTCTGAAAACAATGCAATCGCAAATCTATTTAAACAATGATGAGGATTTGCTCAGATGTACAAAGCCCCTTATCTTGACGCATTATGAATCTGAAACGGGCAACGCTtttatttttggtctttttaaTGGATGTAACTTGTGAATTTTGAGTCAACGGTCAACATTCATTCCACATCATCAGTCCAGATGGATTTCAGCCATAGCTGTATGCGACTAGCCTTCACGCTAATGTGAATTGAAGCCTGTTGtaattcaaatgaatgcatttttttttttttttttttttaataatttgtcgTCAGACTTTTTATGTGCTGATAGCACCATGGATCTGGTCACTAACTGCTAATGGAGTGTttatgagtctgtgtgtgtgtgtgtgtggatgcatACACACGCAGGGCTGGAATGGTCTGGAATAATCTGGCTTTTACAACTCTGACTCGCCACTCAACTGTTTgctcattttcatatttcagagcGGCCTTTTGTTGCATGGAAACACTTCCTGTTATTGTGGTAATGGTGACTTTTGTGTTGTGGTTGGTTGGTTTGCTACTTTCTAAGCCAAAGGCCTTTTTTGCTCGTTTGCTTATATAAATGATGCttcttttataaaatacatgtttcagattattttaaatattctttttatgttgttgttgttgttctttggGGAAAACGTAATGTTTACACCTGTATCAAATGATAgattgcatatataaatacatatatcaTTCACCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166910 lncRNA downstream 22130 14899182 ~ 14904907 (-) True si:ch211-105c13.3
TU166911 lncRNA downstream 22130 14899182 ~ 14904907 (-) False si:ch211-105c13.3
TU166909 lncRNA downstream 34642 14892040 ~ 14892395 (-) True G113034
TU166370 lncRNA downstream 211546 14715216 ~ 14715491 (-) True G112686
TU166357 lncRNA downstream 289644 14635563 ~ 14637393 (-) False LOC122359963
TU166915 lncRNA upstream 165 14946595 ~ 14947384 (-) True G113039
TU166926 lncRNA upstream 24175 14970605 ~ 14988931 (-) False si:dkey-246i14.3
TU166958 lncRNA upstream 164403 15110833 ~ 15197354 (-) False G113073
TU166979 lncRNA upstream 218567 15164997 ~ 15165440 (-) True G113090
TU166987 lncRNA upstream 221943 15168373 ~ 15170070 (-) True G113092
XM_043262069.1 mRNA downstream 141 14926292 ~ 14926896 (-) True LOC122361105
XM_043261039.1 mRNA downstream 2520 14913948 ~ 14924517 (-) False pbxip1b
XM_043261164.1 mRNA upstream 24111 14970541 ~ 15015462 (-) True si:dkey-246i14.3
XM_043260338.1 mRNA upstream 200594 15147024 ~ 15150068 (-) True si:dkey-247k7.2
XM_043260021.1 mRNA upstream 205314 15151744 ~ 15163625 (-) True trim46a
XM_043260023.1 mRNA upstream 207888 15154318 ~ 15163625 (-) False trim46a
XM_043260022.1 mRNA upstream 207888 15154318 ~ 15163625 (-) False trim46a
XR_006252733.1 other downstream 13391 14909325 ~ 14913646 (-) False LOC122359907
TU166030 other downstream 625418 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1243128 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3515260 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3640605 11270664 ~ 11286432 (-) False G111450
TU167048 other upstream 522050 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 522050 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 522050 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 546391 15492821 ~ 15496375 (-) True rps19
TU167155 other upstream 870549 15816979 ~ 15819086 (-) True G113203

Expression Profile