RNA id: XM_043262091.1


Basic Information

Item Value
RNA id XM_043262091.1
length 3856
RNA type mRNA
GC content 0.50
exon number 35
gene id nek10
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25712911 ~ 25728665 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGTCTTCACGTTCCTGATTCGAGTTTGCGTGTGTTGTCTTCTCAAAAATATATGACGACCTTCAGCCATGCGATTCAGCCCACAGGAATCTTCCCGATCCACACGGACATGAGACGGATGAAGATAGTGTCAACATGTCTCTCCAAGACAGAAAGTCTAGAGGACCAAACAGACCAAACCCCAAACCTAAAGATAAggAGCTTCTTGATCTCAAGAGGCTTTTATCGCTGATCACAGCTCCGGTGTCCGAACGGGTTTCATCTCTGAACCGGTCCAAGGGACGAAAGGACTCCTCGAACGTTCACGATCGCCGCAAAATTGGAAACGGCGAAGCATCACTGCTGGATAACTTTAGCGTGACTTACAGAAATCAGAGGTGTTTTAGTGACCGGCCACATCGCAGACTGTTCCTGGACATCTTCACTGCCTTGATCGATAACAGACTCGGTTACAGgaaCTGGCTGGAAAATTCCTCCTCGGACAACATCCTGAGAGTTTTAAACTGCTTGAGGTTGTTGATCAGGGATCCTCTTCACCAGAAAGTCTTCTTTGAACTCCAGGGTGCCGTGCAGTTCGCTCAGCACATGGAGTCGGTCGCGACCGTCTATCTCGAATGCAGAGAACAGACGCTGGAAATCGAGCAGCTGGTTGCAATGACATATGTGTTTCAGAAGTTGGCTTCTGTTGAGGAGCAAAGGCGGTGGATTATTAATTGTGGCGCGCATAAGaCCCTGGTGAAGCTGCTCTCTACCCGGGACAGTAGTGTGGTATTAGGATCTCTGCTGGCTCTCACCACACTGGCTGAAAGTCAAGAATGCAAAGAGAAGATCGGAGAGCTCTCTCTCGTGGAGAATCTTCTAGTTTTTTTACAAGAGTATGACGTGTTTTCGAAAAGGTTGAGCGCGGAGCTGCTGCGGTTGCTGTGCTCGGTGCAGTGTGTCAGGGATCAGGTGCGTCAGTGTGACGGGCTGCCGGTGCTGCTCAGTCTCCTTCACTCGGAGCACGTGAAGCTGCTGTGGAGCTCCGTGTGGGTTCTGGTGCAGCTGTGTCAGGATCCCGACACCAGCGCTGAGATCCGGGCGTGGGGCGGCGTGCAACAGCTGCTGCGCATCTTACACGGAGAACGAGTGTACGTGTCCGACCACTCCACGATAGAAACTCTTTCCAGCGCCAACGCAGCGGGCAGGATACACAGACAGCACGTGCCAGCGGAGGCGAGCCCCCAAGAGACGGCCGAGAACACCATCAATCTGCAGGCAGCATGCTGTGCAGCGATCACTGAGCTTGTTTTGGACGACACAACAGCACATAACGTGGTCCAGGAGAATGGTGTGTACATAATTGGCAAACTGATTTTGCCACAAAACCTTCAAGATCCTCAGGCAAAATCCTTACAGTGTTATGCTTTCAGGGCCCTACGTTTCCTTTTTAGCATGGAACGCAATAGACATCACtttaaaagACTATTTCCTCCAGAGTTGTTTGAGATGTTTATAGATGTCGGGCACTACGTAAGAGACATTACCGCATATGAGCCGTTGCAGGAGAAAATGGCCGTCTTATCGGAGGAGGAATTGGATGTTCTCAGGGAAAGCATGGAGACGGTGAACCAGAACCGACCTCCTCTGAGAGTGATCAATGGTTATGCGGTTTTGGACCATCTGGGCAGCGGCGCATTTGGCAGCGTCTTTAAGGTCCGTAAGCAGAGCGGACAGAACATTCTGGCGCTGAAGGAGGTGAACTTTCACAATCCGGCCTTTGGCAAAGACAAGCGATCCAGAGACAGCAGCGCGGAGAAGATTGTGTCTGAGCTGACCATCATTAAAGAGCAGATGTCTCATCCGAACATTGTAAAatacttcaaaacatttttagaagCTGATAAGCTCTATATCGTGATGGAGCTCATAGAAGGAGCTCCTCTGGCTGAGCATTTCAGCTCTCTCAAAGAAAAGCGGCAGACGTTCACCGAGGAGAGAGTCTGGAACATTTTCATACAGATCTGTCTGGCTCTGAGATACTTGCACAAGGAGAAACGGATCGTCCACCGAGATCTCACACCCAATAACATCATGCTcggagagagagataaagtCACTATTACTGACTTTGGTCTTGCGAAACAGAAACAGGAGAACAGTAAGCTGACGTCAGTGGTCGGGACGATACTGTACTGCTGTCCAGAGATCGTGAAGAACGAGCCGTACGGCGAGAAGGCAGACGTTTGGGCCGCGGGCTGCATCCTCTATCAGATGGTCACCCTCACGCCTCCGTTCTACAGCGCAAACATGCTCTCGCTCGCTACCAAGATTGTGGAAGCGGTCTATGAGCCAGTACAAGACAAAGCCTTCTCTGAGAGAGTGACTCACATGATTAAATGGTGCTTGACTCCAAACGCAGACGAGCGTCCGGACATCATCGAGGTCAGCTCCGGGATTTCAGATGTAATGATGAAGTTTGTGGACAATCTCTGCGCCTCCTATAATTCACTGGAGAAAAGGGCAGAACGAGACAGGAAGAGAGCGCAGAAGTACTTCCTGGAGAGCAACAGGACCAGGATGTGGGGCCCGATGCAGCCGAGTGCCATCCTCGAAGAACAAGATGCAACCCGGGATGCAACTCAGAGATCGGAAACTTCTGCATCGATTTCAGAACAAAATCCAAGTCAAGAAACGCCTGGGAATGTCGCTTTAAAATCTCCCGATGAGCTGAACACGCTCAGCGGCGCGGATTGCCAAAAAGCGAAAGCACggccagCATCGGCGGGAATTTATTTATCTCAGAGAAAAGTTCGACAGATCGACGATCCCAACCAAAGGCTTCTCGAACTTCTGCATAAGATTATATTCATAACTCAGCTCCCTCCTGCTCCACAAAACAGCTTGAAGCAGCGGGCCGTCGAGCGCTTCAAGAAGCCTCTTTTCACGTACGGAAGCGATCCGTACAATCTGAAGGTGGAGCTCAATAAGGTTCTTCAAGGAAGCCAGGAGCTGGTGGAGATGTCTTCAGCCAGCAGAGAGTGGTGGTCCATGATTCAGTCTCTGAGTTCAGAGCCATCCACTGCAGAAACCCGCGGAGGGGAATCAGGTTACACCAGTCTTCAAGATGGACTCACCTATGAGGACATGCAGAGTATGGTGGAGGACGTGCTGGAGGAGAAAGGCTATTACAGCGCGGCTCCCGGCAGAAGTGACGTGGATTCGGGAGCGGGAACCAGACGAACTCAATCCCCGTGACCCGGCCCCCCTCCAGCGGCGCTCGCGTCTGCCCCGGCGACAGCCTCTCAGGTCAACCTGACAATAATCACATTATGAATCATAAGCTGATTACGTGCGTATGAACCACACGTGCTGCTGTCTGGAGTATATTAGATTGCAACGATAGCCGGGGGCTCGCACACGACGATTTACCTCGTTTGACTCCGTGCACTTTACCGCGTGTGATTTCCCTTGCTGTGTTTTTACCGATTCACGCGAAACAGACCTTTGAATGAAATATAGTTTCAATATAAAATAGCACTTTCGTTTTTGATGACCGAATGAACGTACAGCTTCTACCCACGTCAAAAGCGGTGGGAATAGATTGAACAAAATATAAAGAGCGTttatgtgtgatgtgtgtggtATAATGACAttgttttctatgttttatgcACATTCAGCGGTGTGCAGGGGCCTCGTCTATTAAATGTTGTGCAGAAACTATCCTGAAATCGCACATGAAATGCACACCATCATCATAATTCACGTCAAAGACGGTTTTCATAAATAAGCTTTATGAGGCCCCTGAAGCCCGAGAGCACTAGAAaatcattcattgtttttgtcaatcctgcaaataaaaaattaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171627 lncRNA downstream 2225 25708114 ~ 25710686 (-) False LOC122361130
XR_006252865.1 lncRNA downstream 3202 25668360 ~ 25709709 (-) False LOC122361130
XR_006252862.1 lncRNA downstream 3202 25668360 ~ 25709709 (-) False LOC122361130
TU171631 lncRNA downstream 6115 25704700 ~ 25706796 (-) True G116247
XR_006252863.1 lncRNA downstream 10377 25664719 ~ 25702534 (-) False LOC122361130
TU171683 lncRNA upstream 48071 25776736 ~ 25778404 (-) True G116282
TU171682 lncRNA upstream 49167 25777832 ~ 25778404 (-) False G116282
TU171795 lncRNA upstream 291860 26020525 ~ 26073006 (-) True G116351
TU171793 lncRNA upstream 333626 26062291 ~ 26069534 (-) True G116350
TU171803 lncRNA upstream 342495 26071160 ~ 26128626 (-) True G116359
XM_043260186.1 mRNA downstream 85812 25568531 ~ 25627099 (-) False znf385d
XM_043260187.1 mRNA downstream 85813 25568531 ~ 25627098 (-) False znf385d
XM_043260185.1 mRNA downstream 85814 25568531 ~ 25627097 (-) True znf385d
XM_043261713.1 mRNA downstream 393833 25314054 ~ 25319078 (-) True si:dkey-82o10.4
XM_043261866.1 mRNA downstream 413050 25294224 ~ 25299861 (-) False LOC122360982
XM_043261514.1 mRNA upstream 2528 25731193 ~ 25733582 (-) True lim2.5
XM_043260290.1 mRNA upstream 6858 25735523 ~ 25745044 (-) False vsig10l
XM_043260289.1 mRNA upstream 6859 25735524 ~ 25745044 (-) True vsig10l
XM_043261884.1 mRNA upstream 17900 25746565 ~ 25752100 (-) True etfb
XM_043260361.1 mRNA upstream 356109 26084774 ~ 26088904 (-) True LOC122360054
TU171647 other downstream 36501 25667819 ~ 25676410 (-) False LOC122361130
TU171232 other downstream 1384938 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 2037613 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 2103070 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 2188529 23519808 ~ 23524382 (-) True G115882
TU172219 other upstream 651007 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1078455 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 1081652 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 1081652 26810317 ~ 26812909 (-) False G116632
TU172263 other upstream 1081652 26810317 ~ 26812974 (-) False G116632

Expression Profile