RNA id: XM_043262107.1



Basic Information


Item Value
RNA id XM_043262107.1
length 1137
RNA type mRNA
GC content 0.48
exon number 12
gene id tsnare1
representative False

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22419870 ~ 22523750 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TACAGAGTCATGTGATGTTGTGAGCCGGGGTTGAATCTGAGAGGTTCTCTTGCGTCTGATGTGAGTGCTAAGTGCTCTCCCTCTCAAGAAAAAGGaCTAGACCCATTATTGGAGGACCCAAAATGTCTTACGGATCCATTGACGCGGGATCGTTTGGAAGCAGAAATCCATTTGGTGGACCCACAAGGCAGGGATACCAGCCAGTAGCTACGCAAGTCAGTCCCTCCGAGCTGCAAGACGTTTTCCAGGAAACCTCCTCTAACATCTTCCAGATCAATGCTAACGTGGTAACACTAGAGAAAAACCTTCAGTCGCTGGGAACATCCAGAGACACAGCAGAGCTACGCCAGAGTTTACATTCCACACAGCAGCAAACCAATAAAGTCATAACAAGCACGAGCCAACTTGTTAAACAACTCACTGACATCATCAGCGGGTCTTCACGGCAAGACAGGCTTCGTCTGACAAGACTCAAGACAGAGCTATCAGATTCTGTGCAGCGTTATGGAGACCTGCAGAAGAAAATTGCAGATCGTTCAAGGGCCTTGCTTCCTCCTGCACAAAAGGACAGGAAACAGAGCCTACAGACTCCTTTCAGTGAACTGGTTGAAGAGGGGCCGTTGTTCGGAGCAGAGGAGCAGAGCATTGAGGGTGACGGTCAAGCATTCCTATCAGAGATCAGTGAAGAAGATGTGGAGATCCTGAGGCAGAGAGAAGAGGCACTACTGCAGATTGAGagaGACATGCTGGACGTCAATCAGATTATGAAGGACTTGGCCAGCATGGTGCATGAACAAGGAGACACCATAGACAGCATTGAAGACTACATTCAGACCACGTCGTCGCACGTGGAATCAGCCAATCAGGAGCTTGCAAAAGCCAGTCATTATCAGAGGCAgctgaggaggaggaagtgTTATCTGCTAATCGCTGGAGTGCTGCTTCTTACTTTGcttatcattattattgcagTCTCAGCCAGAAAATGAGAGCAAGACCACAGAGATCTCTGTTTCGACTCTGCTGTGATCACTCCTCAACTTCccagcaaaataaaagtctgtacGTAAAGGTCCACATGCGCTCACTCCCTTTCTTCTTATCTCTGTCTGTACTTCTGTCAGATTGTGTTTTGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU170171 lncRNA downstream 183733 22230240 ~ 22237066 (-) True G115262
TU170039 lncRNA downstream 546748 21873826 ~ 21874051 (-) True G115170
TU170024 lncRNA downstream 595362 21825198 ~ 21825437 (-) True G115155
TU169974 lncRNA downstream 806620 21605980 ~ 21614179 (-) False cenpw
TU169954 lncRNA downstream 1031652 21388815 ~ 21389147 (-) True G115098
TU170280 lncRNA upstream 159677 22683427 ~ 22683638 (-) True G115335
TU170525 lncRNA upstream 250016 22773766 ~ 22774032 (-) True G115496
TU170565 lncRNA upstream 361965 22885715 ~ 22888001 (-) True G115536
TU170567 lncRNA upstream 368356 22892106 ~ 22901138 (-) False cdc42se1
TU170586 lncRNA upstream 387129 22910879 ~ 22911323 (-) True G115548
XM_043261609.1 mRNA downstream 69756 22347650 ~ 22351043 (-) True snrnp48
XM_043261611.1 mRNA downstream 76699 22335163 ~ 22344100 (-) True zgc:113232
XM_043261610.1 mRNA downstream 88765 22330179 ~ 22332034 (-) True cd83
XM_043261302.1 mRNA downstream 212195 22179651 ~ 22208604 (-) True emc2
XM_043261187.1 mRNA upstream 239454 22763204 ~ 22767288 (-) True mrap2a
XM_043261382.1 mRNA upstream 255485 22779235 ~ 22797020 (-) True plekho1b
XM_043261414.1 mRNA upstream 288819 22812569 ~ 22815095 (-) True si:dkey-23o4.6
XM_043261867.1 mRNA upstream 368352 22892102 ~ 22901187 (-) True cdc42se1
XM_043260054.1 mRNA upstream 392217 22915967 ~ 22929917 (-) True LOC122359864
TU170138 other downstream 331745 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 452264 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 616995 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 715840 21704018 ~ 21704959 (-) True G115141
TU169980 other downstream 859583 21560221 ~ 21561216 (-) False G115116
TU170599 other upstream 408877 22932627 ~ 22933967 (-) True G115554
TU171080 other upstream 996058 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 1064435 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 1146148 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 1802957 24326707 ~ 24327973 (-) False phactr4b

Expression Profile