RNA id: XR_006252790.1


Basic Information

Item Value
RNA id XR_006252790.1
length 1358
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC122360226
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7294182 ~ 7296238 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTGAAATGACACATGCTTACATCATCACACGGCAGTCAGACACGACGAGCGGCAGCAGCTCGCTGGCGAGGGGGAGGATGCGCTTCACACAACGTGAGACGCATTCATAACCTATCAGCATCTCAGCTCTGTCCCCGAGCAGGAATTACTGCACACAAATCCACTTAAGAGCCATTAGGTGAAAGTTGTTTCTAAGCCCAACGGAAAAAGCAATAAACCTGAATCAACCCAAActcaagcttttaaaaatgcatccaaTATACAAGCATTTACAAACACATCTGTGTTTTGGAGTTCATAAGATCTGAAATGAGGGGGTTCGTTGAATTTTATTCAGTTAGATGTGAATATGATCAAATTCCTGCATGCTGTGATATTTCCGTCTCTCTTCATCCGAGACAAAGCCTTCAGACGGGACGCTGTCGTCTTCTACAGGCGGATGCTGCTGCCATCCAGCTAGAGGCTGTGGAATAGCATGCGTCCGAGATCAGCGAGAGACGGGACTGTGCAACCTGCTTCGCTTTCATCCCTGAGCTCCGTGTGTGTGACCGAGACgaaggaagaaaggaaaagCACAGCTCATTCCTTCCAAACCAGCAAAACCTGCATCCTCAGACAGCAGCGTATGAAgctctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgctgcCGGCTCGAGCACTGTCTGCCcgagtcaaacacacacacactgcccgCTTTCTGAGAGCTGCACTGCATGTCAGTCCCGTCCACCCATATCTGCTCTTCTGAGGGATCGTCTGGAGCACCTCGCATGCTTTTTGTCTTCTGCAGAGGGATCGGGAGCGTGATGGAGTTACGTCAGTGATTTCATTTGCTCCGGGACGTTGAGACTGTGAAAATAAAGGCGGATGAATGTGGACTGGGCACTCGTGCGTTTCGATGGGATGAGATTTGGAGGGAAATACACTTCTGAGTGTGTTTGCGGGAAGAGGATAAACATTCAGCCGGTCTGATGCAGTCAGGTCATGTCAAAGGAGAAAAGATGTGTAAATGCGTTCCTTCGATCGCTTCACCAGCTTTCCTCCAACTTTTCAGCAGCTGTGGATGAGCGCTCAGATCCGGAGGTCTGCCGGCCGGGCATCAGAAGGAAACCGCCCAGGAGAGCTTTAGTCCGAGTTATAGCGCATgTTTCATTGGGATATCTGACAGAGTTTAGTGAAATTATTTGTTTGCACATAATGGAAAAAatccactgaataaaaacacaattaattaGAACTTATACGTCTTGGTGCAATAATTAGTTAAACACTTTTTAAGACATTGTTTACTGTGGATGAACTGAATAAATTGGTGTTTGTagcatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163030 lncRNA downstream 98866 7194538 ~ 7195316 (-) True G110315
TU163020 lncRNA downstream 203119 7089726 ~ 7091063 (-) True G110307
XR_006252833.1 lncRNA downstream 605279 6685500 ~ 6688903 (-) True LOC122360716
TU162877 lncRNA downstream 1013891 6280028 ~ 6280291 (-) False LOC122359836
TU162909 lncRNA downstream 1090293 6201389 ~ 6203889 (-) True G110223
TU163114 lncRNA upstream 34910 7331148 ~ 7385396 (-) False LOC122360224
TU163119 lncRNA upstream 34910 7331148 ~ 7385396 (-) False LOC122360224
XR_006252784.1 lncRNA upstream 35288 7331526 ~ 7386350 (-) False LOC122360224
XR_006252782.1 lncRNA upstream 35289 7331527 ~ 7386333 (-) False LOC122360224
XR_006252788.1 lncRNA upstream 35292 7331530 ~ 7386348 (-) False LOC122360224
XM_043260643.1 mRNA downstream 92863 7197091 ~ 7201319 (-) False LOC122360222
XM_043261656.1 mRNA downstream 603956 6650949 ~ 6690226 (-) True LOC122360792
XM_043260113.1 mRNA downstream 727993 6561850 ~ 6566189 (-) False irx1a
XM_043260112.1 mRNA downstream 728003 6561850 ~ 6566179 (-) True irx1a
XM_043260027.1 mRNA downstream 954686 6279709 ~ 6339496 (-) True LOC122359836
XM_043260642.1 mRNA upstream 92478 7388716 ~ 7392318 (-) True sox4b
XM_043261055.1 mRNA upstream 145660 7441898 ~ 7618596 (-) True cdkal1
XM_043261494.1 mRNA upstream 531977 7828215 ~ 7830750 (-) True LOC122360680
XM_043260903.1 mRNA upstream 632291 7928529 ~ 7951085 (-) False cables1
XM_043260901.1 mRNA upstream 632291 7928529 ~ 7951084 (-) True cables1
TU163032 other downstream 92801 7195490 ~ 7201381 (-) True LOC122360222
TU163014 other downstream 210658 7081962 ~ 7083524 (-) True G110303
TU162893 other downstream 1194255 6096675 ~ 6099927 (-) True G110215
TU162885 other downstream 1259405 6029208 ~ 6034777 (-) True G110208
TU162864 other downstream 1345393 5944221 ~ 5948789 (-) False LOC122359839
TU163145 other upstream 314391 7610629 ~ 7618585 (-) False cdkal1
TU163147 other upstream 314596 7610834 ~ 7618585 (-) False cdkal1
TU163187 other upstream 532582 7828820 ~ 7830717 (-) False LOC122360680
TU163302 other upstream 794413 8090651 ~ 8092353 (-) False mkxb
TU163327 other upstream 919791 8216029 ~ 8216595 (-) True G110544

Expression Profile