RNA id: XR_006252807.1


Basic Information

Item Value
RNA id XR_006252807.1
length 2774
lncRNA type inter_gene
GC content 0.38
exon number 7
gene id LOC122360486
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18528871 ~ 18544680 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGAAGGTTTGTATTGTACTTCATATGAAATCATTCGGATCATTTTTAAGGTCATACTTGTTTGTCACATTTTTGGTGGAGTTCATCATATGAAAAAATTCTAATATCTTTCTGATGCCTTCAATTACAGGTCTGACTTGTTTTTTGACAGTAGTATCCAACGGCATCCACCATACAGTTGAACTCTTCTGGCATTGGTCGGGAAACTGTCAAAATTCATCACTAATCCTTTGCTCAGGACTGCAGCCGGTCGTTATGGATGTCTGCCGGATGTACGTCCAGTCAACTATCGGGGGACTCTGCTGTCTAGCCATAGTTGGGGACAGGCCAGCAGGCAGCAACCACGCCTGACAGGACAGGGCCTCCGCAGCTGGCTCATTTACTgagcagaaatgaagtcagtCTTCACTGAAATTCCATGCCGTAATCGTCCCGTTCCTCGGAAGCCAAAGAATTCAGACGGCAAAGCAGAGTTCGAAGGATCTTTTGGACATGTGCTTGTCATTATCCATTGAGGAAAAGCTCTGAGTGAGTGTAAGGGAAATCCTCAAGGCATATATCAGTCATAGACTGGCGGAACATTTGCCCTCACACATCCTTTTTCAAAACATGAATTTGTGTTGCTGAGTTATGCCTGAAACTGGCCTGAGACAGAGAGGGGATATCAGCACTTCATCAGCACAAGTTAACTTTCTGTAAAAGAGTTTCATCAGTGCTGGATCCGTCATCATGGGATGATAATGGATGAACTGGACATTTTACTGGTAAACGAGAGCTGTACTTGCCCAAGACGGCTGACTAACTGAAACGGGTTCTTTGGACTTGGTTTCTGGTGTATTTTTAAAGAGatgtGAAGtccttattttatatttaagagtTGCCTGGCTATCTTTTTAAATGGAGAGGAGGAGCTTTAGGACTGAACTGAGAATGTTTCACCCGCTTAAGCACTGATTAGTCCTCTTCCAAACCTTTCAGTGCTGCCCTCAGGAGTGATTCCTTGATACATGCTTCATGGCATAAGATGTTTTACTTACAGCAACACTGCATTTTTATGGTCCTGCTAGacaccaaaattaaaatattttttttcccctgcctTTTCTTGGAACAGCAGCCATACTGGTACTGTATCAGTTTTGGACTACAGGgaaaaataatcataacatttaaaaaaaaacccactggttttaatttcatttcatttcatcatgtGGTATTCATTAGTCTTAATCAgttaaagttgaatctaatttTGACTACCATATAATTTAGCTTGACATTTTAGCTTGAATGTACAATGcatctaaatattaaaacaatttaagtattaattattaacctGTATTAATTTAAACCTTTAAACCAGTCAGGTTTTAGGTTAAATACCTAAAATAATTTCTGTGGTAAATCTGATGTTTTTCAGTCTACAACGtgaaatatatcagtaaatTCCCCCCTGTGATTGAAAATGCAGTTGTTAACAAGAggaaaaggttttttaaatgaagacttTTTGCTTCTGCCAGTtgtatttagtctttttttgtgGAAAGAAGGTGACGCATTTGGACTAGTGCATAATATCATATTTGTTAGTGCGTTTGTGCCCTTTTGTTGTTACGCATATTTTGGATTATTATATGCATagtcatttttcattatatatttcatcaacatttattcatgtaCATTTTCGGTCACGTCTAATAATTGACCTTTTTATTAATGGATTTTTGTCCATAATCTTATTGAAGAGATTGCTAGCGCTAGTTTGTCTGTGCATGACAACTGAAATGCTTGACTTGAAATTTCTCCTTTATTTACAATAAGTGAGCAAAGTACGTTTAGAATATATTTCCAGCTGTCAAGTTCACTCAGAAGTCATGAGCTAAGTGGCCTCAGAGCCTTTCAAGGCTCCGGTTCTGTGACCGTGGATATGCTTAGTTTCATTCACCGAGCTGATGCTAGAACTGACAGAGGATGGAGGGTCTTCCAGCCAGTGAAATGTGCTTCTGCCACTTTTGTCTACTGTGCTCATAAAGTTCAACCATATATGCGTGGACAGAGGCTCCTTGTGAAAAACAAGATGGCCATGCAGAACTTTGCCAAGAGAAACATAAGTAGACAGAAAAGCGTGCACATGCCTGAGGAACATTCTTCTCTTCATGGCAGATCCATCATTTTTGAGTTCCACATGGTTTGTGTCTGAAACGTTATGCAGTGTATTATAACGCGTTGGGTTTGTAAAGTTTGTTTAACCTTTCTTCTCCCTCTCTGAACCTGATACGTTGTTTTATTGCTGATTGACTTGTCTGATATGATCCATTTCTTACTTTTTATGCAAGTTGGTGCTGTAATGCCATCTTAAGAAAACACTGCCATGCAAAAACGGTTCGTTAAATTAGTTAGAGtgcttttatttgcttaatATACATGCAAAATCTGTCAGATGTATTCAAACGCAGCAATACTATCTATAAAAACTGAGACTTGGGATTATTTGTGGtgtttttcattcacatttatGCAGAGAATTTGAAGAATACAGAACGTCCGGTCTGAAcccacatacatatacatgtgctTTTCATGTCAGCAAGGTTTAATATCACTCAAAATGTATTATGCTGAATAATTTGGTTGCACAGAAATGCAAACTCTCAGCCAAAACAGTTTTCCGTCTTATTTTTCATTCAGGTATGGTGTAGATAGTAACATCTGACTTGGCTCTACACAGTGGCAAAGCCCAATGCTTAATCTGATgtatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168419 lncRNA downstream 153257 18373968 ~ 18375614 (-) True G114075
TU168395 lncRNA downstream 289602 18195515 ~ 18239269 (-) False lmna
TU168370 lncRNA downstream 333703 18164406 ~ 18195168 (-) False LOC122360777
XR_006252837.1 lncRNA downstream 339270 18163340 ~ 18189601 (-) False LOC122360777
XR_006252838.1 lncRNA downstream 339270 18163340 ~ 18189601 (-) True LOC122360777
TU168638 lncRNA upstream 3508 18548188 ~ 18548939 (-) True G114231
XR_006252842.1 lncRNA upstream 142486 18687166 ~ 18688395 (-) True LOC122360941
TU168682 lncRNA upstream 195074 18739754 ~ 18740829 (-) True G114259
TU168713 lncRNA upstream 268540 18813220 ~ 18821088 (-) False rpz
TU168711 lncRNA upstream 268549 18813229 ~ 18821088 (-) False rpz
XM_043260629.1 mRNA downstream 8584 18492626 ~ 18520287 (-) True mroh1
XM_043260321.1 mRNA downstream 65545 18459745 ~ 18463326 (-) True scrt1b
XM_043261353.1 mRNA downstream 138733 18376664 ~ 18390138 (-) True dgat1b
XM_043260466.1 mRNA downstream 155954 18368344 ~ 18372917 (-) True gpr20
XM_043261101.1 mRNA downstream 161598 18357417 ~ 18367273 (-) False slc45a4b
XM_043261118.1 mRNA upstream 7957 18552637 ~ 18557855 (-) True zgc:194210
XM_043261115.1 mRNA upstream 14051 18558731 ~ 18565123 (-) True csnk2a1
XM_043261116.1 mRNA upstream 14438 18559118 ~ 18565127 (-) False csnk2a1
XM_043261486.1 mRNA upstream 21371 18566051 ~ 18589702 (-) False ptp4a3b
XM_043261485.1 mRNA upstream 21371 18566051 ~ 18589685 (-) True ptp4a3b
XR_006252779.1 other downstream 8584 18492626 ~ 18520287 (-) False mroh1
XR_006252778.1 other downstream 8584 18492626 ~ 18520287 (-) False mroh1
XR_006252805.1 other downstream 161881 18357417 ~ 18366990 (-) False slc45a4b
unassigned_transcript_2159 other downstream 1538497 16990302 ~ 16990374 (-) True trnat-ugu_49
TU167506 other downstream 1846693 16680197 ~ 16682178 (-) False esrp1
TU168645 other upstream 104839 18649519 ~ 18650609 (-) True G114236
TU168660 other upstream 125001 18669681 ~ 18671245 (-) False LOC122360747
TU168665 other upstream 149232 18693912 ~ 18698316 (-) False LOC122360940
TU168666 other upstream 149232 18693912 ~ 18698316 (-) False LOC122360940
TU168710 other upstream 270536 18815216 ~ 18821088 (-) True rpz

Expression Profile