RNA id: XR_006252808.1


Basic Information

Item Value
RNA id XR_006252808.1
length 952
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC122360493
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16724418 ~ 16737282 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTAGTTTCATAATTAACACACAAGTGAGATACGCTCCTGCATAATGAACTCTATGTGAATGACAGTAAAAGAATCGCGGCTGTTTAACAGACCCAAACCAGTTATCACGGCGAGCTTCTGTGTCCTAATGACTCCTGCAGAGCTCGTCCAGCTCCTGCTCTACAGAGACATTCAACCGGTGTAAAACTTCTGCTATCGGCCGTGTGTGGGAGTCATTTCTGTGCGAAGCATCTGTCTCGGCtattcatatttgctttttgtGGTTCGGATATTGCATGCAATGACAAGGCATAAATGTGCGACAGTAGCTCGGCCGCTTTTAAAAACGGTGTAGCTTTTACGAGCTACTTTTGCCAGCGATCAGCGCTGTAGCGTGACAAAACACTACAGCACTActtgtgttttattgcattgtctACAGTATGGACCAGCGAGCCTGAGAGGAGACTGTGTGAAGAACTGGCGCATTtggaaatatgaaatGTCTCCAGCATTACCCAGAATGCAACAACAGTGGTACCGGTCTAATTTCGGAAACCGTCAATGAGTGGTGACTTCACCAGTCCTCAGACAAAGTGCTAaagGGATTTTGCGGCAGAACAAGGAAGACACTCTTCACTTGCTGCTCACAGACATAAACCATCAGGAATGTAGGGAGAGAACATGCGGTTATCAAAGAGCTACAAATGTGACAAAACATGTTAATTAACcaatgaaatatgtattttaattttaagaattgtAGATGCAAAGGCTTTTTTTTCAGGCTCTTTTGTGTATGTTgagtaatttcactttaatgccAATAAATAGGTCCTTTTCGTTGCCATTATagtgaaataactgaaaataaacgcaggagcctgataaaaatgctcattttagagGAAAATTTCAAACGGCACTTGCATTGAGTATTTAACAagagtttaataaatattatattacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167574 lncRNA downstream 30128 16693930 ~ 16694290 (-) True G113473
TU167509 lncRNA downstream 42240 16586084 ~ 16682178 (-) False esrp1
TU167571 lncRNA downstream 44306 16679684 ~ 16680112 (-) True G113470
TU167532 lncRNA downstream 116738 16606714 ~ 16607680 (-) True G113439
TU167526 lncRNA downstream 134804 16588685 ~ 16589614 (-) True G113433
TU167617 lncRNA upstream 84348 16821630 ~ 16822180 (-) True G113504
TU167706 lncRNA upstream 151039 16888321 ~ 16892578 (-) True G113569
TU167704 lncRNA upstream 157070 16894352 ~ 16895923 (-) True G113567
TU167727 lncRNA upstream 173053 16910335 ~ 16911882 (-) True G113587
TU167728 lncRNA upstream 176378 16913660 ~ 16913962 (-) True G113588
XM_043261130.1 mRNA downstream 25569 16697321 ~ 16698849 (-) False ino80c
XM_043261131.1 mRNA downstream 25569 16697321 ~ 16698849 (-) False ino80c
XM_043261129.1 mRNA downstream 25570 16697321 ~ 16698848 (-) True ino80c
XM_043261126.1 mRNA downstream 31290 16688215 ~ 16693128 (-) True pdp1
XM_043261266.1 mRNA downstream 74105 16646546 ~ 16650313 (-) True rnf41l
XM_043260819.1 mRNA upstream 46738 16784020 ~ 16799200 (-) True tmem245
XM_043260820.1 mRNA upstream 46738 16784020 ~ 16799198 (-) False tmem245
XM_043260821.1 mRNA upstream 62078 16799360 ~ 16804107 (-) True LOC122360322
XM_043261774.1 mRNA upstream 80444 16817726 ~ 16820755 (-) True alg2
XM_043261046.1 mRNA upstream 178236 16915518 ~ 16928686 (-) False erp44
TU167506 other downstream 42240 16680197 ~ 16682178 (-) False esrp1
XR_006252795.1 other downstream 484912 16232972 ~ 16239506 (-) False fam8a1b
XR_006252800.1 other downstream 495952 16218661 ~ 16228466 (-) False atxn1b
TU167253 other downstream 583183 16139319 ~ 16141235 (-) True G113267
TU167269 other downstream 710667 16012964 ~ 16013751 (-) True G113275
unassigned_transcript_2159 other upstream 253020 16990302 ~ 16990374 (-) True trnat-ugu_49
XR_006252805.1 other upstream 1620135 18357417 ~ 18366990 (-) False slc45a4b
XR_006252779.1 other upstream 1755344 18492626 ~ 18520287 (-) False mroh1
XR_006252778.1 other upstream 1755344 18492626 ~ 18520287 (-) False mroh1
TU168645 other upstream 1912237 18649519 ~ 18650609 (-) True G114236

Expression Profile