RNA id: XR_006252822.1


Basic Information

Item Value
RNA id XR_006252822.1
length 2472
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC122360619
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11261627 ~ 11264238 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agctggaacctgggaacactcctcataaaacacaatgtacttgttgCATTGTAAAAAGATTgacatctacgctaatattagtcgtttctttcttattctgtttctcggTTTGTAACTCTGTAATAGTTGGCTTAGTTTTGTGAATTCATGTGTCTATCCTTTCTTCCAGGTTGGATAGCAGTAGCAGAGTCTCAGTGGCGTGCCTGAGTATGCAGACTAGATCACGAGAGAACTTTTGAGTAAGAAAACAGACTTGGGTTAGGTACATAACACAAAGCAACTGCAAGACCAGACAATGAGAGTGTGGAGTGAGCGTGTTCTTATGTAGAGCTTGATTGGCATCAACAGGTGAGGGGCATTCACTGATAGGAGTACAAGTGTAAGTGCAGAGGCAGCTCAATTGGTGACTGTGtaaaaaaccattttaaaattaattacccATAATATGTCATTAAAATTTAGTGATGCATGGCAAGATATATAAACTATTGTTGCACTGAATTACATCTTAGTCTTTGTCTTCTGTGGTGTAATGGAAGAGGCTAGACACAAAggtaaaacaaataatgtttattgcacaGATGGTTCAACAGAGTAATGCACAAGTATTACAGTCTTTGGAGATCTTTCTTGGGAGTTGGAGCAGAGAATAACTGGGTATCTTGTATATATTGGTATTCAGGAGAACAGGAGACACATTGGGGGAGCACAAACACCTCAGTATGTCGACAACTGGAGAGAACTTGGGAGACATGGAGCTTGGGAGACTACGGATAAACACAAGAAGACCTCATGGAAcaatcacacaaacaaactgCAGAAGTTTATTACAAAAAGGAGTTTCAAAAGAGTCCCCTCTCCCATCTGCGGTCTTAAAGCTATTAATGATCAAATAAGGACCGACAGTGCTCAAATAGTTTGGACCTATGTCCTGGCAAAGAGGATGGTTGCTCAAAACGCTCCTGTTCATCAAAATTAAACCAATCAGCCCTATGGCGCGACACCTTGGAAAACAAAGTGAAGCTGAATTGATCACAAGACCGGGTCTTTGTATTAAGGAGAACCTTGTCGTCCAGTGAAACTGTGCAATGCCGCAGGACACATTAATAATTCATGATTCTGCTTCCTATCTGCTTGGGACTTTAACCATTCTTACATACAACAAACtgaacatttcaataaataatattaaagcacACATGCTATGTTATAATACACTTGCTATGCCTTATATGTGCTTGTTGGAACTTAATCgatgcattatacatttttacctCTATGAATTAGTGTAATCATTATTTTAGTAGGATATATTagtaatgtactgtatgtacaaGAGATGCTGTTTCTGCTCTTGAAAGAAAGCTAAGCTTATTGGCTACCACTTGGAGTGAGTGAAATGTCAGAATTTGTGTTGTGTACATATCATGACACTTTCTAAAGTTATTGAccaaaagttgcaaaaaaagaaacagcaatAGTATGGAAACAGCAATAGCGTCTGATTGGAGGACTGTCCAAATCTTCTCCTTAAAACTGCACCGTTTGAACAGAGACTTTGCTTTTTAAGTATGCTTTTAGCTGGCTTCTAAGTTTGCTTCTAGCCCAACTTTATAGTTATGCTGTTAACCACAATTTTAACATCAGGGCTTTTAACCTGCTCGCTTTTAGCCACCAGCATTTTAGCTGATGGAGCTTGCTTTTAacaccgcccaaatgtttacgcaaAGAAGGCGGTACTATTATTCttgctgtagtgttgctgctgTCGCTATGTGCTAGATGTGCTGTTTGACGTTTTGTAAACtactttgtgcttccaaaagaggacacaactaaaAATAAGTGGTTACTGATTTCAACTCTGTTTTAGTGCAGTTCAGCCCAAATGTTAGAGggtgtttaatgcatttaagtaGGACTGTTTTCTTAAAACCAAAAGAGCAGCCTATGTTGGCAATACACAGAAACTATATTCCAACTGTACAAGGACAGTCTATAGCGCTTCTCACTCAAAACGTTTAAGtaagttttcttattaaaataacccACTACTTACTATTTGAACTATTTAAACATGAGTTACATTGAGCGGTAAAATGTAGTGCTGTTTGTCATTTCCCCAGTCACAAATGCAGCCATGGTGTTTACATGGTGCAACGCATAAAGAGAAAGGCTTTTCACACTGTGCTTAACCCCGGGTTATCATCAATCTAAGCATCGTTTTTTAATACCGATAAAGGCTTGTTTCACACCTGAAAGCAGTGCAAGGACCACAATGTATCCGGGGTTATGAAACCCTGCTTGGAGCAGGGTTAGCACTGCATTTGTGGTGTTAACCCCACATTGTGGTGATAAGTTTGTTCAGTGTGAAACGGTAAGGTGTTTGCTTGTTGCTGCTGAACCCttggcagccaatcagaaactgAACAGCAAAGCTTGTGTCACGTCAGTAACTGAAAACGTGCTTCG

Function

GO:

id name namespace
GO:0010942 positive regulation of cell death biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0043068 positive regulation of programmed cell death biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164527 lncRNA downstream 579 11260745 ~ 11261048 (-) True G111437
TU164503 lncRNA downstream 35554 11225782 ~ 11226073 (-) True G111421
TU164502 lncRNA downstream 36218 11225186 ~ 11225409 (-) True G111420
TU164468 lncRNA downstream 101571 11159839 ~ 11160056 (-) True G111393
XR_006252847.1 lncRNA downstream 336863 10924115 ~ 10924764 (-) True LOC122361039
TU164548 lncRNA upstream 1765 11266003 ~ 11266214 (-) True G111452
TU164549 lncRNA upstream 2358 11266596 ~ 11266825 (-) True G111453
TU164543 lncRNA upstream 5382 11269620 ~ 11286432 (-) True G111450
TU164553 lncRNA upstream 68937 11333175 ~ 11333662 (-) False LOC122360600
XR_006252826.1 lncRNA upstream 215868 11480106 ~ 11481227 (-) True LOC122360676
XM_043261674.1 mRNA downstream 378203 10857520 ~ 10883424 (-) True LOC122360812
XM_043261964.1 mRNA downstream 438438 10817891 ~ 10823189 (-) False LOC122361032
XM_043261963.1 mRNA downstream 440949 10817891 ~ 10820678 (-) True LOC122361032
XM_043261961.1 mRNA downstream 450610 10808337 ~ 10811017 (-) False LOC122361028
XM_043261367.1 mRNA upstream 68937 11333175 ~ 11386993 (-) False LOC122360600
XM_043261363.1 mRNA upstream 71728 11335966 ~ 11386993 (-) False LOC122360600
XM_043261362.1 mRNA upstream 71728 11335966 ~ 11386993 (-) False LOC122360600
XM_043261361.1 mRNA upstream 71728 11335966 ~ 11386993 (-) True LOC122360600
XM_043261369.1 mRNA upstream 72118 11336356 ~ 11386993 (-) False LOC122360600
TU164396 other downstream 378416 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 395199 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 513327 10746793 ~ 10748300 (-) False LOC122361037
TU163906 other downstream 1989022 9270971 ~ 9272605 (-) True G110974
TU163829 other downstream 2109444 9145930 ~ 9152183 (-) True G110911
TU164545 other upstream 6426 11270664 ~ 11286432 (-) False G111450
TU164609 other upstream 146440 11410678 ~ 11411777 (-) True G111490
TU165859 other upstream 2389822 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 2970316 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 3645087 14909325 ~ 14913646 (-) False LOC122359907

Expression Profile