RNA id: XR_006252839.1


Basic Information

Item Value
RNA id XR_006252839.1
length 1367
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC122360778
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7988950 ~ 7992867 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCTCGCTACAAGCAGGCCGATTGTTCCTAGAGATGGTGTTTGAAGTGAGCAAGGTGAGAATGTCTGCTCAATGCTGTTTTTTGTCAACAGCTCAGGATCTCCCTGTCAGCTTCTGCAGAAGCTTCGGCGGTCCAAGGTAACAGCATGCATTGTGTGGAAAACGGCATTCTGTTCGACGTTTCCTTTTGTGTCGTATGAAAATGTTTTCGCCTCTGCATCCTCCCCTACCTCAGGTTTGCGTACGTGCCAAAATCAAGCGCAGAACTCCGATCTCCCACGCCTCTCAAAACCGCTTCACAATGTTAGCAGATCTGCCTGATACGACTCCCTTTCTGAGGTTCCCGCTTCTTCAAGACCTTGGATCCCTTTGCAAAAACAAGCGCAGCAAAAACCAGTAGCACTTCAGCCTGGACACTTcacttttttgttgtcgttttgtTTTAAACGGGACGTAAAAAGAGCAGAATGTAAAAAAAGCCCAATCAATCCGATACGAGAGGGAGTGACACGTTTTAAGTATTATAAAGTATTAcatctttcattctctctttcttttttccgaAGCAGGGAGCAGATCCAAACTCAGCATGAGTAAACAGTGAGTCCTTCTCTGCCTGGTACAGAGCTGGTCCTGAAAGAATGATCTCCATCTGACTGTTTGATGACCCGATAAAAACATAATTGAGAATGTATTTTCTGGCTAAACAAACCCTGGTCATACCACGGAAACTATAGGCTAGACAACTCCATTGTGTGTACGTTTTCAAACACAAGGAGCATGTTTAAGTTCACGGCTCGACAACACcaggattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatggagGTCATGAGGACAAGATGAATTTGTACAGGAGAAACAGTGCCCTATCATGGTGGCCATGTTTCTCGGGATCTCACTCCATTGGAGCAGAGGGTGATCTTATCATAACTAAAGTGCACAGCTTTGTTTGCCAGAcaaagaaatggaaagaaaactGTCTGAGGGCACGGCAGCATTTTTCCATGTATGCTGAAAGAAAGTGATAACCTGAAAAAAATCGAAAAGGGTTTTAATCAAGTAAAAAATACGATTTGATGTTGCTGAATCAATCccaaatatgtttaatttataaaagcaaaaacatttttatgggtTAAATGAGGCACAAATAGCCTTTTAATGGCAGGTTACcaaattttttacagtgcagatgTGAAGGGTAAAGTCAGAACAAAAACTTCAAGGTCTCAAAGCAATTCTCTCTTATATGAGTTATTAAAGGATATATTCCTGCTCGggtgtcatttattcattctcatATCGATCCAAACCTATGACTTGCTTTAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252846.1 lncRNA downstream 28575 7958881 ~ 7960375 (-) True LOC122360975
TU163265 lncRNA downstream 28912 7959291 ~ 7960038 (-) False LOC122360975
TU163199 lncRNA downstream 84357 7849679 ~ 7904593 (-) True G110449
TU163204 lncRNA downstream 87942 7883932 ~ 7901008 (-) True G110452
TU163206 lncRNA downstream 99655 7887795 ~ 7889295 (-) True G110453
TU163295 lncRNA upstream 90033 8082900 ~ 8083300 (-) False mkxb
TU163299 lncRNA upstream 90502 8083369 ~ 8083825 (-) False mkxb
TU163329 lncRNA upstream 242041 8234908 ~ 8235793 (-) True G110546
TU163331 lncRNA upstream 244891 8237758 ~ 8239176 (-) True G110548
TU163610 lncRNA upstream 554915 8547782 ~ 8551552 (-) True G110753
XM_043261491.1 mRNA downstream 4661 7977629 ~ 7984289 (-) False gata6
XM_043261489.1 mRNA downstream 4661 7977629 ~ 7984289 (-) False gata6
XM_043261490.1 mRNA downstream 5080 7977629 ~ 7983870 (-) True gata6
XM_043260903.1 mRNA downstream 37865 7928529 ~ 7951085 (-) False cables1
XM_043260901.1 mRNA downstream 37866 7928529 ~ 7951084 (-) True cables1
XM_043260655.1 mRNA upstream 12851 8005718 ~ 8053185 (-) False mib1
XM_043260652.1 mRNA upstream 12851 8005718 ~ 8053185 (-) False mib1
XM_043260656.1 mRNA upstream 12851 8005718 ~ 8053185 (-) False mib1
XM_043260654.1 mRNA upstream 12851 8005718 ~ 8053185 (-) False mib1
XM_043260651.1 mRNA upstream 12851 8005718 ~ 8053185 (-) False mib1
TU163187 other downstream 158233 7828820 ~ 7830717 (-) False LOC122360680
TU163145 other downstream 370365 7610629 ~ 7618585 (-) False cdkal1
TU163147 other downstream 370365 7610834 ~ 7618585 (-) False cdkal1
TU163032 other downstream 787569 7195490 ~ 7201381 (-) True LOC122360222
TU163014 other downstream 905426 7081962 ~ 7083524 (-) True G110303
TU163302 other upstream 97784 8090651 ~ 8092353 (-) False mkxb
TU163327 other upstream 223162 8216029 ~ 8216595 (-) True G110544
TU163340 other upstream 305922 8298789 ~ 8302245 (-) True G110554
TU163343 other upstream 319398 8312265 ~ 8316685 (-) True G110556
TU163623 other upstream 640483 8633350 ~ 8636222 (-) True wu:fj39g12

Expression Profile