RNA id: XR_006252851.1


Basic Information

Item Value
RNA id XR_006252851.1
length 313
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id LOC122361072
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16066166 ~ 16067545 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGATGGTGTCGGTGCAGGAGGACGAGACAGAGGAGACGGTGTGCCGTAGATCGGTCTGTGAGGGCACCTTCAGGCTGATCTCTGAGGGGGACGAGCCGGGCTCCAGAACCGGACCACCTGCCCAACAGACAGAACAAGAGCTCAGGAAGACATCGAGCGCCTCGTGATCGGACACATCCGTGAGATCCATTTGTTCCAGGAGATCAACATTCACCTCCATTGAAGACATGCTGCCTAATGGATCTGCcccagagaaagaaagaaattataatCCTACACTTTGACAACTCTAACACCAAACCAGCTTCAAAA

Function

GO:

id name namespace
GO:0048490 anterograde synaptic vesicle transport biological_process
GO:0031175 neuron projection development biological_process
GO:0008089 anterograde axonal transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0033162 melanosome membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0010008 endosome membrane cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167258 lncRNA downstream 59792 16004858 ~ 16006374 (-) False adnp2a
XR_006252813.1 lncRNA downstream 79982 15984741 ~ 15986184 (-) True LOC122360541
TU167227 lncRNA downstream 98973 15964758 ~ 15967193 (-) True G113244
TU167208 lncRNA downstream 107502 15951428 ~ 15958664 (-) True G113234
TU167287 lncRNA upstream 52781 16120326 ~ 16196677 (-) True G113281
TU167254 lncRNA upstream 71867 16139412 ~ 16141235 (-) False G113267
TU167319 lncRNA upstream 123317 16190862 ~ 16192689 (-) True G113300
TU167286 lncRNA upstream 126484 16194029 ~ 16195896 (-) True G113280
TU167356 lncRNA upstream 284725 16352270 ~ 16356916 (-) False G113325
XM_043260048.1 mRNA downstream 59695 16001313 ~ 16006471 (-) True adnp2a
XM_043261263.1 mRNA downstream 65518 15998312 ~ 16000648 (-) True rbfa
XM_043260914.1 mRNA downstream 102458 15959669 ~ 15963708 (-) False prelid3a
XM_043260913.1 mRNA downstream 102458 15959669 ~ 15963708 (-) True prelid3a
XM_043260718.1 mRNA downstream 127276 15936647 ~ 15938890 (-) True lratd2b
XM_043261540.1 mRNA upstream 2994 16070539 ~ 16103655 (-) True LOC122360718
XM_043262054.1 mRNA upstream 81418 16148963 ~ 16152079 (-) True LOC122361095
XM_043262055.1 mRNA upstream 84959 16152504 ~ 16154388 (-) True LOC122361096
XM_043260160.1 mRNA upstream 130174 16197719 ~ 16210633 (-) False dtnbp1a
XM_043260161.1 mRNA upstream 130174 16197719 ~ 16210633 (-) False dtnbp1a
TU167269 other downstream 52415 16012964 ~ 16013751 (-) True G113275
TU167180 other downstream 204273 15857599 ~ 15861893 (-) True G113220
TU167155 other downstream 247080 15816979 ~ 15819086 (-) True G113203
TU167050 other downstream 569791 15468480 ~ 15496375 (-) False rps19
TU167253 other upstream 71774 16139319 ~ 16141235 (-) True G113267
XR_006252800.1 other upstream 151116 16218661 ~ 16228466 (-) False atxn1b
XR_006252795.1 other upstream 165427 16232972 ~ 16239506 (-) False fam8a1b
TU167506 other upstream 612652 16680197 ~ 16682178 (-) False esrp1
unassigned_transcript_2159 other upstream 922757 16990302 ~ 16990374 (-) True trnat-ugu_49

Expression Profile