RNA id: TCONS_00009839


Basic Information

Item Value
RNA id TCONS_00009839
length 3414
RNA type mRNA
GC content 0.55
exon number 27
gene id XLOC_005052
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 899223 ~ 961014 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgAATCCGGGCTGCatgctgctgtgtgtgtttggttttgtTGGAGGAGCGGTCCTCGTCAACTCTGCGCTGCTCGTCTCTCTGTCCGTCCTGCTGCTGGTGCATTACTCCGTCTCCAGCGGCCTGCCCGCCATCACACACACTCTGCAGACGCGCACCAGCAGGAAGGAGCGACCCGTCTCTCTGGGTATTTTCTCATTGCCGGGCAGTGATGTGATGAGTCCCGATGTGCACAGAGACGAGTCTCCAGGATCAGACACCTGGAGATATAACAATCTCAGCCATCCTCGCTCCAACACCAGCCTCAAGgatgaGCTGTCTGGTTTGGGTGGAGGCGAGTGTAAATCCAGCACTGAATCCGCTTCACATGCAGTGCCGGAGGAGACCGAGGGGTTAAACCCAAATCTGGACTCCAGCAGCAATAAACCAGACAGCAGCAAAAACATCGGCGTCCAGGGAGACGCAGCCTCAGAAACACAGGCCACAGCTGATCAGGGTGTGAATGGCGAGCGGTCGGAGGTGCAGGCCATCATTGAGTCCACACCTGAGCTGGACATGGATCTGAGCGGATGCAAAGGGTCCAGCACTCCCACTAAAGGCATCGAGAACATGGCGTTTGACCGCAACACCGACTCTCTATTCGAGGAGCTCTCGTCCGCAGGAAATGACCTCATCGGGGATGTAGATGAAGGAGCCGACCTGCTGGGAATGGGCCGTGAAGTCGAACACCTCATCCATGAAAACACACAGCTGCTGGAGACCAAAAACGCTCTGAACGTGGTGAAAAACGACCTGATCGCTCGAGTGGACGAGCTGGTGTGCGAGAAAGACGTCCTTCAGGGAGAGATTGAGGTCCTGAAACAGACGAAAGACAAACTGGAGGAGAGGAACAAAGAGCTGGAGGACGAGCTCAAGAAAGTACGAGCTGAGATGGAAGAAACCAAGGTGGAGACGAAAGGGGACGATGATAGCGACGTGCCGACGGCCCAGCGCAAACGCTTCACTCGTGTGGAGATGGCCAGAGTCCTGATGGAGAGAAACCAGTATAAAGAGAGACTGATGGAGCTGCAGGAGGCCGTCAGGTGGACGGAGATGATacgGGCTTCCAAAGAGAATCCAGCTCTGAGCGAGAAGAAGAAGTCCACATCTCCTCTCAGCTCTCCTCAGTCCAAGAAACCTGAAGCGCCGGTCAACATGAAGTACAACGCTCCCTCCTCACACGTGGTGCCGTCGGTGAAGAAGCGCAGCAGCACACTCGCTCAGCTGCCCAGCGACAAATCCAAAGCCTTCGACTTCCTCAATGAGGAAGCTGAGGTGGAGACTGTAGTGTCCCGTCGAGAGCAGAAAAGAGCTCAGTACAGACAGGTGAAGGCTCACGTGCAGAAAGAGGATGGCAGAATGCAGGCGTACGGATGGAGTTTACCTCCAAAATACAAGGTGGCCAATGGTGGACAAGCAGATAGTAAGATTAAAAACCTGCCGGTGCCTGTTTACCTGCGGCCGTTGGATGAGAAAGATGCTTCCATGAAGctgtggTGCGCTGCAGGAGTCAATCTCTCCGGTGGGAAAACGCGGGACGGAGGCAGTATCGTGGGCGCGAGTGTGTTTTATAAAGACGTGTCTGGAGGAGAGAGAGTTCCCATCAGCACCGGGAAGAAGAGCGGATCTCAGAGCAGCCTGGACCGTCTGGAGGAAGAGCTCAAGgatcaGGAGAAGGAGCTCCGGCATCAGGATGAGCTCTCCAGCCTGGTGTGGATCTGCACCACCACACACTCCTCCTCCAAGGTGCTGGTGATCGACtGTGCcgatgtttgtgtgtgcgtgcctgtaaatgcatgtgtgtttgtgtgtgcaggttTATGCatatgtgattgtgtgtgtgtccaaatgtgtgtgcatgcatgtgtaaattttctgtgtgtgtgtgtgtgtttgtcaggcgCTTGTGAGACGGATTACCCAGCCGGAGAGTATGCGGGGTCAGAGGTGCAGGGCGGCGCTGAGGAACCGTCTTCAGTGCGCTGCTCGGCCGGCAGCTTCTCTGCGGGCTCTGATGGAGGTCTGGAGGGCATCAGTGTGGTGGGCTGCTCTGCTGACATCCCTCACACCGTCTgcacaaactccacacacaccCCTGACTCCgacgaGGTTGTGTCTGCGCGGCAGCAGGACTCGATAATCACTGCAGCAGAAGAAGCTCTGGAGGCCACAGAGAGCAGCAGCAACACTCCAGCAGACGACTCTCATCCAGAGATCTACACTGAACACGTCTTCACCGACCCGCTGGGGGTGCAGAGCAGCAGAGACGCACCGTGTGATCTGGTGAAGGACGGTGTGAGTTCTCTGCCGCAGGATCTGATGAGAGAGGAGGCCTGTAAGATGAGCAGTGTTCTGCCTACCATGTGGCTCGGTGCTCAGAACGGCTGtgtgTATGTTCACTCTTCAGTAGCGCAGTGGAGGAAGTGTCTTCACTCCATCAAGCTGAAGGATTCTGTCCTGGGCATTGTacACGTGAAGGGTCGTGTTCTGGTGGCTCTGGCTGACGGGACGCTCGCCATCTTCCACAGAGGCGTTGACGGTCAGTGGGATCTGAGTAACTATCACTTGCTGGATCTGGGTCGTCCTCATCACTCCATCCGATGCATGACTATGGTGCACGATAAAGTCTGGTGCGGATACAGGAACAAGATCTTCGTGGTGCATCCCAAAGCCATGAAGATCGAGAAGTCATTTGATGCTCATCCGCGTAAGGAGAGTCAGGTCCGACAGCTGGCTTGGGACGGAGACGGGATCTGGGTGTCCATCCGTCTGGACTCGACCCTCAGACTcttccatgcacacacacaccagcatctGCAGGACGTGGACATCGAGCCCTACGTCAGCAAGATGCTGGGCACTGGTAAACTGGGTTTCTCTTTCGTGAGGATCACGGCTCTGATGGTCTCCTGCAGTCGGCTGTGGATCGGGACTGGAAACGGAGTCATCATCTCCATCCCTCTGACAGACACAGCATCGTCCAAACAACCCGGCACTGCAATCCGTGTGTACGGAGACGAGAGCGGCGATAAAGTCACGACAGGAACGTTTGTGCCTTTCTGCTCCATGGCTCACGCTCAGCTGTGCTTTCACGGACACCGAGACGCCGTCAAGTTCTTCACCGCAGTGATTCCGTCTGCATCAGGATCAGGAGTGGAGGCGATTGCTGATAAATCCTCAGAGTCTCCGACACCAGAACTGGTCAAATCTGTGCTGGTGATGAGCGGAGGAGAGGGATACATCGACTTCAGGATGGGTGATGAAGGAGGCGACACTGAAAACATGGACGATCCCAGTCTGAACCTGCAGCCCTTCCTAGCTAAAGCCGAGCGCTCGCATCTGATCGTCTGGCAGGTTCTGGCCAATCATGACTGA

Function

GO: NA

KEGG:

id description
ko04131 Membrane trafficking

Ensembl:

ensembl_id ENSDART00000188777

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009826 lncRNA downstream 435234 461129 ~ 463989 (-) True XLOC_005045
TCONS_00011054 lncRNA downstream 490592 406187 ~ 408631 (-) True XLOC_005043
TCONS_00011053 lncRNA downstream 543668 337808 ~ 355555 (-) True XLOC_005042
TCONS_00011052 lncRNA downstream 543692 337808 ~ 355531 (-) False XLOC_005042
TCONS_00011051 lncRNA downstream 634022 262396 ~ 265201 (-) True XLOC_005038
TCONS_00009849 lncRNA upstream 52364 995830 ~ 999736 (-) True XLOC_005055
TCONS_00011055 lncRNA upstream 129019 1072485 ~ 1077114 (-) False XLOC_005057
TCONS_00011056 lncRNA upstream 509434 1452900 ~ 1453339 (-) True XLOC_005062
TCONS_00011057 lncRNA upstream 1056553 2000019 ~ 2001490 (-) True XLOC_005067
TCONS_00011058 lncRNA upstream 1057170 2000636 ~ 2001824 (-) True XLOC_005068
TCONS_00009837 mRNA downstream 48766 847187 ~ 850457 (-) True XLOC_005051
TCONS_00009836 mRNA downstream 215023 657704 ~ 684200 (-) True XLOC_005050
TCONS_00009835 mRNA downstream 242683 648334 ~ 656540 (-) True XLOC_005049
TCONS_00009833 mRNA downstream 253251 630295 ~ 645972 (-) False XLOC_005048
TCONS_00009844 mRNA upstream 21294 964760 ~ 979789 (-) True XLOC_005053
TCONS_00009845 mRNA upstream 39330 982796 ~ 990149 (-) True XLOC_005054
TCONS_00009846 mRNA upstream 48976 992442 ~ 999794 (-) False XLOC_005055
TCONS_00009847 mRNA upstream 49637 993103 ~ 999762 (-) False XLOC_005055
TCONS_00009848 mRNA upstream 49966 993432 ~ 999800 (-) False XLOC_005055
TCONS_00009831 other downstream 276934 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009859 other upstream 547006 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009912 other upstream 3342900 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 3352083 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 3354391 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 3354761 4298227 ~ 4301376 (-) True XLOC_005113

Expression Profile

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