RNA id: XM_043262168.1


Basic Information

Item Value
RNA id XM_043262168.1
length 5266
RNA type mRNA
GC content 0.41
exon number 3
gene id pax9
representative True

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 15397788 ~ 15406503 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATGTTATTAATGATGGCTCACATTTAGCCTGCTGGTATCCTCAGCATCAAACGCACTatatttatcctttttttttttttttttttacaaataagtCCTTTGCGAAGACTCCCTAGGTCCGTGATTGCTTTGCATTAAGACGCAacccaatgaaaataaaagcataaaagaatCTAGCTTATGACCTTAATGTTTTTCAGATCTTCATATTTGAGTGGCTACGTTGTGGCAGAGAAGGCAaattatgaaagtaaaaaaaaccccaacatttttatgcaaataatcaGCATTTTATACGTAACCGTTAAATAAAGGcgaaaaaacattaaagcagaAGAGCTTTTAGGACCGTGCCATGGTTACTTGCTTAGCCTTTTTTCCCTCCTTCAGATCAAAAACGGGTTCTAGAACTAAGCCATAcgacaaaatataaatgcatttataaagatGTCGTTTGTAATCATTATCGCTCGAACCACTTAATAAATCGGACGCGTATTAAGAGCAATTTAAATGACATAAGGATAAATCACAGGGcccctatttaaaaaaaacaataccgcCCTGCAAGGTTTCTCCCTTGCTTTAGTCTACGAAATAATTCGAATTTATGCTTATGAAACAAAATTACAGTGCAATGTTTCAAATACTTACCATCCTTAGATCTgtctaaaaagaaaagcaacacTCGGGTAACCCCGTCCACTAGTTCAAAAGCGAGAGGGGAACCTTACGCCGGCGCAAGCGCCTGTCACGTCAAGCCCGTCAGCCAATAGAAAAAGAGCGAGGAAGAAACGCGCGGTTTGATTAGCTGGCAGCGCCTCGCTTTGGAGACATGTGTAAAGGGCCGGCCCATCATTTTCTGGGATTGAAATGTAAGCCTGCGCTCCTTGCCATCAGGAAACAGAAGGCGAATTTTCCTCTCTTGCAACTAATCGGTATCGCATCCGTCTCGGACGCTTAATTTTCATCCACATCGGCTTCGGTGCAATAAAAAGCAGCTAAACTGGACTCGGAACAGGTCAGAAAAGGACAGCACAGCGAAGTTTCTTTTTTCATCGGGAGGCTAAACGCAATGGAGCCAGCCTTTGGGGAGGTAAACCAGCTGGGAGGCGTTTTTGTGAACGGAAGACCCCTGCCCAATGCCATCCGGCTCAGGATAGTAGAGCTGGCACAGCTGGGCATCAGGCCTTGCGACATCAGCAGGCAGCTCCGCGTCTCTCACGGATGCGTGAGCAAGATTTTGGCTCGGTACAACGAAACCGGCTCGATACTTCCCGGCGCAATCGGCGGCAGTAAACCCAGGGTCACGACCCCGACCGTGGTCAAGCACATTAGGACTTACAAGCAACGGGACCCCGGCATTTTCGCTTGGGAGATTAGAGACAGACTGCTCGCGGACGGAGTGTGCGATAAATTCAACCTGCCCTCCGTGAGCTCGATCAGCAGGATTCTCCGCAACAAGATCGGAAACCTGTCTCAACAGAACCAGTACGAGTCGAGCAAACAGCCTCATCCTCAGCCTCAACCCGCCCTACCTTACAACCACCTGTACTCCTACCCAACTCCGATCGCGGCCGCTGGGACTAAAGTACCAACTCGGCCCGGCATGCCCACTCTTCCTGGACACATGGCAATGCATAGGATATGGCCTTCCTCTCATTCTGTTACAGATATTCTGGGCATTCGGTCAATAACGGAGCAGCAAATTAGTGACAGTCCGCCCTTTCCCAGCGCCAAACTAGAAGAATGGAGAGCTATTAACAGGAGTAATTTTTCACCAGCGAACTCTCCACTAGTCAGTGGTGCGGATAAACCTCACTTAGAACCCGAAGCCAAATACACACAGGTAAAGAAGCCTCCTATGTTAACAAGCAAAACCAATCAAATCCAATCCGGAAGGAGCAGGGGGGGGAAAAGAGAGCCTGATTCAGCAAATTATTACTCGAAATTCCAtaacttttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcaaatccgtgtgtgaatgtgtgcgcGCGAGTGTGTTTCTTTGGCGTGGGCGGGCGCACGAGGCCTCGCGCGGACCGCGGGTCACTGGGTTTCAGAagtatttacaaattaaatgtagtatctcacattttgatttgaataaaacgAAACGACACTGTTTAGCCTGCTCGTGTCTGTTTTCGCGCGGCTGTTGTGTGTGAGACCGCGGGGCTCTTCGGAGCGAGCTTCACGCGTGCATTACCGagtcaaaatgtattcatattcctcaatgctttttttttttttggagagcgTAATCCTGAGTGTGTGACgaataaaactgcaataaacGTTTTGCTACAATATTTTGCATAGGCTAATTTTTAAACATCTAAccgatattttttttatcctgttcTTTTCTGATTAAGATATTACTTGAATTATACGTTTGCTTGTCATAGACGTTTCATTTTACTACATAGtcaagatatgtttttttttctcctgtgaTTTAacgaattttaatttttttttttaaagaatatgaCTTTGTCGAAATCAGTGACTTACGATTTCTATGTAACCCGTTAACACAAAATCAGCCGAAGTAAAATAGAACAACAATGTGGTTAAATATGATTAGggttattttaatcaatttatgatttaattattatatagctattacacagtaaatattttgtgtagCTTGCGGCTCATCGAAGTCTTatcagttaattattattattcattaaagctttaaacatttgcattacGTAGCCTACATtaatttacaatacaataaacaataactaaatattaaaagtgtcTATCTTTGTTTCAGTGCACATGTACGCTCCTTATACCCAATACATATGCATTCGGTTATTCTTTAATAAACACGCACCcgtaatgcattacattactttttttaatattcgcCCATTCTTATATTCACCAGAAACCTTTGGATTGCTAAACCCCTTACCTGTTTTACATTAGAGCAATACTCGGGATAGACACCGCCACCGTTACCacgatttttatcattaatatgcTATTATGGAAACTAGTATCTGGTTGTTCCGCACACGGGCGTTGCGCACTCAAGCAAAGCGTAAAAGACAGTAAAAGCCAAacgtttagatatttttttcgAGAAACTCGTCTGCGCCAGCGTCCGGCCGCTCGCGCGCTTGGATGAGAGGGGAGAGCGCGCGCGGAAAAAGCGCGTGCCATCCGGTGCAGACGCACGAATTATTTATTCTCGCGCCGCTAGGCAGCAACAAACAGATTGACTAATCGTTTGTTGTGGGTCTTAAGAGATTTATGTGTCGTGGAATACGATGGAATAAATCTTTATTAGCGACGCTGAAACATTGTTTCGGCGTAAATTACGCGTGTACTGAttgaaacctaaaaaaaaaaatgaagagtcTAGTTTGCTTAAGAAACGAAGATTGTAAGCTTCGGATGGATGATGAATAGCGCAGACTACCGAATGTTTGAGGCTGTCATCTTGGATAAATGATCAGATATCACGAGGCAGGCTGAATTACGCAATAAACGAGGACAGTAAATAGATAAATCACTGTGGCTTAAAGAGCTTGTTTGTATCTGTCAGAAAGCCCGATAACTTGaaactaattttttaaaaattaaaaccaagAAAGGTCATTGAAAATGAATCGACGTTCAcggcattttaattaaaatagtttatgttATGCGTCTCTCATAACCaatacatttcaattacattttacatgctaCAATACACGCAGTGAATTAACACGTAGGctgataatatataatacatttactgaGAATTATTACCTTTATttccaaaacttttatttaaatatcaaatactaCATTTAACTTTATAAACTTTAACGCATAAGGagatatgagtgtgtgtgtgtgtatatatatatatatattatattatatatttatatctaatttGAATCATCCAGACACAGCGTGATGACATGCTTTATTAACAAACGCAATAGATAGAAACGTTATTTAGAGGATACATGATTTACATTAAGatgactttatttaatgttacaACATTGTCTATTATGGGATGTCggaaaaaaaaggtaactgAGAAACGGACGATATCTAAAATGAAGCtaaacgatttaaaaaaaaagcagtcacTTCTTGGTTTGGTCAACTCCTAAGCGTTTTGTttggaaatatattaaaacgcaGATACATCGCAATACAAAACAACTCTGGTGCAAAATATAACCTAAGCGTAATTGTCTAACATTGTcgagtattttttttcctctacgCGCGGTGGTCTATGGCCGATGAATTTCGACGATTGGATTTTGGATTTTAATCATAACACATTGTTAACGACGTGTAAGAAGTACGTCCGATGATTTGAGTAAAATCACACTGAAACAAGCCAATAAAGCAGCCGCAGGAAAATGTTCTTATAGGCCTGCGTGTCAGATACTTTGCGCTgctagactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacgcgtTTACTTGAAAAAACAATCTCCTTGAGAATTCTTAATACTAAGTGTAACACTTTCGaagcttttcttctttctgtcaAGCTATGCTATCGCCTTTGTTGTTAGTTCGTGCGTGACTCGAATCATTAAAGATAAAGTGTGGCAGAAAATTGGCTGCTTTCAATGCTTTTTaagcaaagaataaaaaaaaaaaaacaccaaagtgCTAGGGGTCAAGAGCGCCGTAAAGagtaaattaaaagcaaatcCTAACTCGGCAACCAAAAAGATTTCATCTGCGCAAAACATTTCCAGTAGCCAGAGACCACCCCGCCTCCCGATCTCTTCCTTTATGTAGAAAAGCCTTGGTGAATTCCTCTCATCCTGAACTGATACTGACATTCTGCCAAAGGGTTACAGGCATTCCCGCGCTTGCATCTTTTTTCATTTCCGTCAGATTTTGAACATCTCGCCCCCCTTTTCTGCTTTACCATCCGCCCATCTCCCCTTGGCTGTTGGCCGCGTGTGGTCTTACGCTCACTGCTCTCTTGTTTTCAGACGCCGAATGGATTGCCCACAGCGAACAGTTATGTCACAGCTCCCAGCATCCATCCTTACCACCCTCCCACCCAAGTGTCACCCTACATGGGGTACAGCGGCACCACGTCGGCCTATGTGACCGGCCCCACATGGCAGCCGC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0060022 hard palate development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09382 PAX1_9; paired box protein 1/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179219 lncRNA downstream 2687 15395897 ~ 15396108 (-) True G121321
TU179218 lncRNA downstream 3433 15395005 ~ 15395362 (-) True G121320
TU179199 lncRNA downstream 85543 15312565 ~ 15313252 (-) True G121301
TU179156 lncRNA downstream 124180 15274083 ~ 15274615 (-) True G121269
XR_006252989.1 lncRNA downstream 188251 15201696 ~ 15210544 (-) True LOC122361632
TU179223 lncRNA upstream 4539 15411042 ~ 15411260 (-) True G121323
TU179224 lncRNA upstream 5962 15412465 ~ 15412703 (-) True G121324
TU179226 lncRNA upstream 8366 15414869 ~ 15415153 (-) True G121326
TU179246 lncRNA upstream 110433 15516936 ~ 15518082 (-) True G121343
TU179414 lncRNA upstream 194763 15601266 ~ 15678209 (-) True G121427
XM_043262852.1 mRNA downstream 180625 15212872 ~ 15218170 (-) True zfp36l1a
XM_043263362.1 mRNA downstream 298838 15083987 ~ 15099957 (-) False crip2
XM_043263641.1 mRNA downstream 334117 15060054 ~ 15064678 (-) False crip1
XM_043262801.1 mRNA downstream 372380 15023470 ~ 15026415 (-) True ptgr2
XM_043262297.1 mRNA downstream 404280 14989660 ~ 14994515 (-) True kif3cb
XM_043262250.1 mRNA upstream 76608 15483111 ~ 15505931 (-) True rps6ka5
XM_043262251.1 mRNA upstream 76608 15483111 ~ 15502687 (-) False rps6ka5
XM_043262625.1 mRNA upstream 277159 15683662 ~ 15688440 (-) True LOC122361708
XM_043263240.1 mRNA upstream 353840 15760343 ~ 15767015 (-) True LOC122362003
XM_043262882.1 mRNA upstream 442962 15849465 ~ 15858684 (-) True LOC122361840
TU179062 other downstream 298871 15083818 ~ 15099924 (-) True crip2
XR_006253025.1 other downstream 372380 15010826 ~ 15026415 (-) False ptgr2
XR_006253090.1 other downstream 558982 14812920 ~ 14839813 (-) False myo6b
TU178546 other downstream 2198768 13196907 ~ 13200027 (-) False LOC122361883
TU178308 other downstream 2578127 12817192 ~ 12820668 (-) True G120660
TU179418 other upstream 279036 15685539 ~ 15686948 (-) False LOC122361708
TU179430 other upstream 282388 15688891 ~ 15689794 (-) True G121438
TU179448 other upstream 331759 15738262 ~ 15740486 (-) True G121456
TU180175 other upstream 2555786 17962289 ~ 17963965 (-) False acyp1
TU180176 other upstream 2555786 17962289 ~ 17963965 (-) False acyp1

Expression Profile