RNA id: TU179448


Basic Information

Item Value
RNA id TU179448
length 1433
RNA type TUCP
GC content 0.35
exon number 4
gene id G121456
representative True

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 15738262 ~ 15740486 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTGTGTGCCGAGTTCAGCTGTGATGAGACACTCTTAAAGAATGAAAGaagattttataatataaccGCAACGTGAGCTTTGGATGGATTGAGCAGACCGGACTCAGAGCTGCCGTTTTTCAGCTGGTCAGCTCAGTATCTATGGAATACGACAACagcaaatatgttttcttttcatctgaTTCTCAAAAAACTGCACCGTCCATtcagatCGCTACTCAAGTGGAGGTGTATGAGGAGGTGAACCTGACTAAAGAGATCGCTGGAGGTGTAATAGGAGGATTGCTGCTACTTGCTCTCATCACATTGGCCCTCTATAAGgcTGGTTTCTTCAAAAGCCAGTACAAGCAGATGCTAGAGAATGCAGAACAAAGCCCCGAAGAGGAACCGGCCACAAGTTAGGTTAAAAAGATCAACCACAACAGTGCGGTATTAAAAATCCAAAGTTTGGCTTTACATGCGAGCGAAAACTGTTTTCCAGGACCGGCTTTATTAATGACGTTTATTGTATACATAgaaatattattgatatatgACTTGTGTCATAATCAAGGGGATATGACAAGCTTTCCTTTAACAAACTCTGttatatctttattaaataaaaggacCTGCTGCACGTTAAAAAGTACTAATGCTTGAAACAATCTCATCAATGTCAAACTCAATCTTGCCATTTAAAGATTCTCAAATGTGTTAGCCATATCAGAATATATCTCGATTTTCGAATGTAAGCATTTTGCATCTTTATAGATTATGTTAGTTGATCTATAATTATGTATTAGACccatctttttgtatttttaaaaagaaaaacatgtggcccagtttcacagacattGCTTGGCCTAAGTCAGACCAGGCCATAGTTAAATTAAGagattttagcatatttttattgatgttgAGACAgaacaatgtattttaagatataCTAGAGCacaatattttcatgcattttagtctgggactagcCTTAAGTCATGTCCGTGAAAGTACGGAtgtaaagttattatttataacattttcatcgtacagaaagagagaaaaaaaacattaacattatcaaTGAACGTTTTCAGTCTAGCCAGATTTAATAATCACTGTCACTGAAACtgtttacattgtaaaaaaatatatattacttgcATAAGGGCTTCAGTTTTCAGACTTTTAACAACTGTGAAAGCAGTTTACTCAAAACACAGACAACATGCATGGGGCTGATGAGTAtgttcaaacaaataaatgtgattagACATCTTGTGGATATTTTTGCCACATGATAGTCTATTATGAGTGTTACaccacaaaaattaaattatgcaaatgatatGTTTACCAAGTGTATTGTATATTATACGTAAGTTAAAATGTGTCACGAATATGGTCAATAAACTTCCATTTGTTCTCAAGATGTCCTTATTCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179442 lncRNA downstream 17939 15713410 ~ 15720323 (-) True G121450
TU179416 lncRNA downstream 52896 15683661 ~ 15685366 (-) False LOC122361708
TU179414 lncRNA downstream 60053 15601266 ~ 15678209 (-) True G121427
TU179246 lncRNA downstream 220180 15516936 ~ 15518082 (-) True G121343
TU179226 lncRNA downstream 323109 15414869 ~ 15415153 (-) True G121326
TU179457 lncRNA upstream 20046 15760532 ~ 15762485 (-) False LOC122362003
TU179466 lncRNA upstream 88998 15829484 ~ 15903651 (-) False LOC122362005
TU179467 lncRNA upstream 95804 15836290 ~ 15903651 (-) False LOC122362005
TU179526 lncRNA upstream 545636 16286122 ~ 16286403 (-) True G121507
TU179528 lncRNA upstream 593557 16334043 ~ 16334439 (-) True G121509
XM_043262625.1 mRNA downstream 49822 15683662 ~ 15688440 (-) True LOC122361708
XM_043262250.1 mRNA downstream 232331 15483111 ~ 15505931 (-) True rps6ka5
XM_043262251.1 mRNA downstream 235575 15483111 ~ 15502687 (-) False rps6ka5
XM_043262168.1 mRNA downstream 331759 15398795 ~ 15406503 (-) True pax9
XM_043262169.1 mRNA downstream 332374 15397788 ~ 15405888 (-) False pax9
XM_043263240.1 mRNA upstream 19857 15760343 ~ 15767015 (-) True LOC122362003
XM_043262882.1 mRNA upstream 108979 15849465 ~ 15858684 (-) True LOC122361840
XM_043262883.1 mRNA upstream 108979 15849465 ~ 15857232 (-) False LOC122361840
XM_043262880.1 mRNA upstream 108979 15849465 ~ 15857232 (-) False LOC122361840
XM_043262878.1 mRNA upstream 118238 15858724 ~ 15890289 (-) False slc24a4a
TU179430 other downstream 48468 15688891 ~ 15689794 (-) True G121438
TU179418 other downstream 51314 15685539 ~ 15686948 (-) False LOC122361708
TU179062 other downstream 638338 15083818 ~ 15099924 (-) True crip2
XR_006253025.1 other downstream 711847 15010826 ~ 15026415 (-) False ptgr2
XR_006253090.1 other downstream 898449 14812920 ~ 14839813 (-) False myo6b
TU180175 other upstream 2221803 17962289 ~ 17963965 (-) False acyp1
TU180176 other upstream 2221803 17962289 ~ 17963965 (-) False acyp1
TU180335 other upstream 2538979 18279465 ~ 18281572 (-) False LOC122361613
TU180588 other upstream 2890771 18631257 ~ 18644980 (-) False LOC122361943
TU180607 other upstream 3046396 18786882 ~ 18790880 (-) True G122247

Expression Profile