RNA id: XM_043263240.1



Basic Information


Item Value
RNA id XM_043263240.1
length 1101
RNA type mRNA
GC content 0.55
exon number 11
gene id LOC122362003
representative True

Chromosome Information


Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 15760343 ~ 15767015 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


atgaaaAATCTGCAGCTGAGTGAGGATGTGGCCGGGGCGACTTTCATGGCTGCAGGAAGTTCAGCTCCAGAGTTATTCACTTCCTTAATTGGTGTTTTCATCACGAAGGGAGACGTGGGAGTTGGCACCATCGTTGGGTCGGCTGTCTTCAACATACTGGTCATCATTGGAGTGTGTGGCATCTTCACCCGTCAGACGGTGGCTGTGACCTGGTGGTCTCTGTTCAGAGACTCGCTGTACTACATCTTCTCAGTGCTGGCATTGATtttgGTTATCTATGATGAACGGGTTGTATGGTGGGAATCTATGCTTCTGATCTCGATGTATGGAGTCTACATCCTTATCATGAAGTTTAACAGTCAGATCGCCAGCTTCGTGCAGAGATCGTGCGGCAGTCCGGGCCAGTGTTGCGTCTGGAGGCCGACGTCCGGAGATAAAGAGGCTGATGAAGCAGGAACCAACGGCAACACCTCCATGGTGCTGCTGAGGAAAGCTCCGGCGGGTTCGGGACAGGAGTCTTCGGTGGTGATGGTGGACGAGCTGCTCATCCTGAGGCCACACCAGCTCTCGTTCCCAGAGGCTGGCCTGCGTGTCATGATCACACCGCATTTCTCTCCGCGCACCCGTCTCTCTATGGCCGGACGCATGCTCATCAGTGAGAGGCAGAGACTGATTAGAAACCGGAGCCCCGGAGACAGCAGCGGCAGCGGAGCAGGGGACACTCCTGGCCAAGACTGCCCGGGCGTGGAGGGGGTTCCTTGGGGTCTGGAGAATGGAGGGGCCCTTGAAAGTGAAACGCAACCCCTGGAGGAGGCTAGGCAGAGGGGCCAAGGAGGGGATTTAGAACGAGTAGCAGACATAGAGGACACACAGCCTAAAgatgatgaggaagaggaggaggaagaggcagACGAAGAGCAACCCTTCAGACCTCTTACTGTGCCAGAGGGGCGCTGGGAGCAAGTCAGGTGGGTGTTATCATGGCCCTTAGGCTGCCTTCTTTACTACACTGTCCCAAACTGTAGTCACCTGACTGGACTCGAGCTGCACTCCCATTCTCACAGGTCTCATTATGAACCGGCAGTGTTGTGGGTGCGTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU179442 lncRNA downstream 40020 15713410 ~ 15720323 (-) True G121450
TU179416 lncRNA downstream 74977 15683661 ~ 15685366 (-) False LOC122361708
TU179414 lncRNA downstream 82134 15601266 ~ 15678209 (-) True G121427
TU179246 lncRNA downstream 242261 15516936 ~ 15518082 (-) True G121343
TU179226 lncRNA downstream 345190 15414869 ~ 15415153 (-) True G121326
TU179466 lncRNA upstream 62469 15829484 ~ 15903651 (-) False LOC122362005
TU179467 lncRNA upstream 69275 15836290 ~ 15903651 (-) False LOC122362005
TU179526 lncRNA upstream 519107 16286122 ~ 16286403 (-) True G121507
TU179528 lncRNA upstream 567028 16334043 ~ 16334439 (-) True G121509
TU179720 lncRNA upstream 715632 16482647 ~ 16483969 (-) True G121639
XM_043262625.1 mRNA downstream 71903 15683662 ~ 15688440 (-) True LOC122361708
XM_043262250.1 mRNA downstream 254412 15483111 ~ 15505931 (-) True rps6ka5
XM_043262251.1 mRNA downstream 257656 15483111 ~ 15502687 (-) False rps6ka5
XM_043262168.1 mRNA downstream 353840 15398795 ~ 15406503 (-) True pax9
XM_043262169.1 mRNA downstream 354455 15397788 ~ 15405888 (-) False pax9
XM_043262882.1 mRNA upstream 82450 15849465 ~ 15858684 (-) True LOC122361840
XM_043262883.1 mRNA upstream 82450 15849465 ~ 15857232 (-) False LOC122361840
XM_043262880.1 mRNA upstream 82450 15849465 ~ 15857232 (-) False LOC122361840
XM_043262878.1 mRNA upstream 91709 15858724 ~ 15890289 (-) False slc24a4a
XM_043262876.1 mRNA upstream 91709 15858724 ~ 15890289 (-) False slc24a4a
TU179448 other downstream 19857 15738262 ~ 15740486 (-) True G121456
TU179430 other downstream 70549 15688891 ~ 15689794 (-) True G121438
TU179418 other downstream 73395 15685539 ~ 15686948 (-) False LOC122361708
TU179062 other downstream 660419 15083818 ~ 15099924 (-) True crip2
XR_006253025.1 other downstream 733928 15010826 ~ 15026415 (-) False ptgr2
TU180175 other upstream 2195274 17962289 ~ 17963965 (-) False acyp1
TU180176 other upstream 2195274 17962289 ~ 17963965 (-) False acyp1
TU180335 other upstream 2512450 18279465 ~ 18281572 (-) False LOC122361613
TU180588 other upstream 2864242 18631257 ~ 18644980 (-) False LOC122361943
TU180607 other upstream 3019867 18786882 ~ 18790880 (-) True G122247

Expression Profile