RNA id: TU180107



Basic Information


Item Value
RNA id TU180107
length 703
lncRNA type sense_over
GC content 0.51
exon number 2
gene id G121905
representative True

Chromosome Information


Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 17790942 ~ 17810401 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTCAGGGGAGCCCTGGATCATGTTGAATTTGTGTATCTCTTTAGCGTAGTATTCGGTCTCGGTGTTGTCCTGGCCGCAGCTCTGATGTCTGTCTCGCCCTAACTCCTCCAGAAGCTCCCTAGTGCTGTTATAGAGGGCCAGCACTTCATAGGACACCGGACTAGGGCCCAGGGTCTGGGGCGGGCTGGTCAGCCGCAGTTTGCTGAGGATCTGACCCCGGATGGCCTCCACCCTCTTCTTCTTGATGTGGTCGATGTCCACAGTGGTGCAGGTTGATAGAGAGAAACTCATGGTCACGCTGTTcaagagaaggaaaaacagcAGTCCTCTGCCCAAATGCATGGTTTATTCTGTACGCTTGTCACTCTAGTAAACACAGTTCCAGTTCAGCTGAATGGGTTTAAAAGGATAAAGAGACTGGATTCCAGGTTGTCCTCTCTACGGGCAGGAGTTCAAGTGCTGAGCCTGTTTTCTCCATGAGATTCCATGCTGCAAACTTATTCCACATCAGCACTGCACAGTAATCCCGTAACATCCTTAAACATCCATCATTGGCGCTTTACAAGAAGCCAGACTTTCACCATAGCGTTCCCCAACCACATTTTCCCCTAAACCGAGCGCCGTGGAGGACTTTCGAGGACTTGGCTGTGAGATGCTCGCTCTCTCttgctctctctctctctctctctctctctctctctct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU180034 lncRNA downstream 170271 17620220 ~ 17620671 (-) True G121854
TU179930 lncRNA downstream 188643 17353412 ~ 17602299 (-) True G121799
TU180032 lncRNA downstream 207353 17582903 ~ 17583589 (-) True G121852
TU179834 lncRNA downstream 575664 17215055 ~ 17215278 (-) True G121734
TU179821 lncRNA downstream 580682 17168223 ~ 17210260 (-) True G121721
TU180177 lncRNA upstream 151888 17962289 ~ 17963965 (-) False acyp1
TU180178 lncRNA upstream 151888 17962289 ~ 17963965 (-) True acyp1
TU180186 lncRNA upstream 178377 17988778 ~ 17989008 (-) False LOC122361562
TU180191 lncRNA upstream 194873 18005274 ~ 18005603 (-) True G121965
TU180216 lncRNA upstream 260461 18070862 ~ 18132726 (-) False G121980
XM_043263338.1 mRNA downstream 100127 17637590 ~ 17690815 (-) False esrrb
XM_043263334.1 mRNA downstream 102840 17637590 ~ 17688102 (-) False esrrb
XM_043263333.1 mRNA downstream 102840 17637590 ~ 17688102 (-) False esrrb
XM_043263335.1 mRNA downstream 102840 17637590 ~ 17688102 (-) True esrrb
XM_043263332.1 mRNA downstream 102841 17637590 ~ 17688101 (-) False esrrb
XM_043263792.1 mRNA upstream 22921 17833322 ~ 17911030 (-) False ttll5
XM_043263793.1 mRNA upstream 22921 17833322 ~ 17911030 (-) False ttll5
XM_043263791.1 mRNA upstream 22921 17833322 ~ 17911030 (-) True ttll5
XM_043263794.1 mRNA upstream 22921 17833322 ~ 17907965 (-) False ttll5
XM_043263796.1 mRNA upstream 22921 17833322 ~ 17906503 (-) False ttll5
TU179448 other downstream 2050456 15738262 ~ 15740486 (-) True G121456
TU179430 other downstream 2101148 15688891 ~ 15689794 (-) True G121438
TU179418 other downstream 2103994 15685539 ~ 15686948 (-) False LOC122361708
TU179062 other downstream 2691018 15083818 ~ 15099924 (-) True crip2
XR_006253025.1 other downstream 2764527 15010826 ~ 15026415 (-) False ptgr2
TU180175 other upstream 151888 17962289 ~ 17963965 (-) False acyp1
TU180176 other upstream 151888 17962289 ~ 17963965 (-) False acyp1
TU180335 other upstream 469064 18279465 ~ 18281572 (-) False LOC122361613
TU180588 other upstream 820856 18631257 ~ 18644980 (-) False LOC122361943
TU180607 other upstream 976481 18786882 ~ 18790880 (-) True G122247

Expression Profile