RNA id: TU180177


Basic Information

Item Value
RNA id TU180177
length 1478
lncRNA type sense_over
GC content 0.42
exon number 3
gene id acyp1
representative False

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 17962289 ~ 17963981 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGACGCGCGGTGATGATGACGCTGCGCATGTGCCGCTTCATGAGCAAAACAGTAAGTTGTCGCCGCACGTAAACGCTCGAAACCCCAAGAAAGTCGATTTGAGGCGGATTTCAGGAAGCAGAAAGACGTTTATTATCGTTCGTCCACCGGTGACCATGTCCTCTGAAGAGCTGCTGTCTGTAGATTATGAAGTGTTTGGGAGGGTGCAGGGGGTCTTCTTCAGGAAATACACCCAGGTAAGTGTCTGTCTAATGCAGGGACGTAATGATTCCCGGGAGGGGggttatttttaaacctttctGTGCagtcaaaaacattaaaaccacTATTATTGCCCACGCAATATGTAATAATGTGGCACTGTACACCCTGTTATAGCTTGCTGTATATTGACACGATCAGTTCAAAATAAGATCCACTATCTAAAGttacctgtctgtctgtgtttataaGATTTGTTCTATATAATGGCTTTTAAGCTgagtttaaaataagtttaataacactttgggcaaaataaatattaaactgacACAAAATTACGCGTGAATGATGAAGTATGGAGAATTACGAAACGTAAACCCACCACCCGtcctttcataaaaataatctcGCCTTTGGTTGAAGTGAATTATATTGTGAAGGTAGACATGAAATCATAAGAGACCCTATTTACTTACACGCATTTATTTTCCAGTGTTACTTTAGGGAGATCACTCTTGTCATCTCTTGTTATTactttgtatttcagttttagttattctaggcattgcttttttttttaacatgtatttgttttaaaatgatttagccagatgttttttaatggttttagttgGGTAtgctcaggaaaaaaaataaaaaatcatattacGGACATAAACGGCTAACTATTTCGTGTCGACTGTTCATGTGTTTGCTAAAGATTTCAGATTTTGCCGATAGGACAGAACTGTTGTTATATTTCAGTGTGTGTCCTTTTACATACCAAGGCCAGACGTTTTGTTGCCGTGCATGCCCGTGAATGACTTTATTGGCACACGGGTGTGAATCTGTGGTGTGTTGTGTTTGAGTCGGAGGGAAAGAGGCTGGGTCTGGTGGGCTGGGTGCAGAACACCGATGCTGGGACGGTTCAAGGCCAGCTGCAGGGTCCCGCCTCCAGGGTCCAGGAGATGCAGCGGTGGCTGCAAACCACCGGCAGTCCTCAGTCACGAATCGCCAAAGCGGAGTTCAGGAACGAGCGGGCCGTCGACAAACTGGACTTCAAGGATTTCCGAGTAGCCCGCTAACGACAAGACGACTcgatttagtatttattaacaCATGCTTCTTATTTATTTCCGTTAAACACACCTTCTTATTGACATGATGTAACATCTGTTATAGACTTGTAGAGTTCTGTAGATGAAAAACccctaaataatataaaatacagacTCCATGTTCACTCCTGTTTCTTCACTGTTTCGTCGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180107 lncRNA downstream 151888 17790942 ~ 17810401 (-) True G121905
TU180034 lncRNA downstream 341618 17620220 ~ 17620671 (-) True G121854
TU179930 lncRNA downstream 359990 17353412 ~ 17602299 (-) True G121799
TU180032 lncRNA downstream 378700 17582903 ~ 17583589 (-) True G121852
TU179834 lncRNA downstream 747011 17215055 ~ 17215278 (-) True G121734
TU180186 lncRNA upstream 24813 17988778 ~ 17989008 (-) False LOC122361562
TU180191 lncRNA upstream 41309 18005274 ~ 18005603 (-) True G121965
TU180216 lncRNA upstream 106897 18070862 ~ 18132726 (-) False G121980
TU180210 lncRNA upstream 166109 18130074 ~ 18132726 (-) True G121980
TU180217 lncRNA upstream 166109 18130074 ~ 18131825 (-) False G121980
XM_043262437.1 mRNA downstream 3694 17952048 ~ 17958595 (-) False fosaa
XM_043262436.1 mRNA downstream 3710 17952048 ~ 17958579 (-) True fosaa
XM_043262179.1 mRNA downstream 13051 17939741 ~ 17949238 (-) True jdp2a
XM_043263722.1 mRNA downstream 26065 17916202 ~ 17936224 (-) True flvcr2a
XM_043263792.1 mRNA downstream 51259 17833322 ~ 17911030 (-) False ttll5
XM_043262357.1 mRNA upstream 18086 17982051 ~ 18004214 (-) True LOC122361562
XM_043262205.1 mRNA upstream 306906 18270871 ~ 18276126 (-) True LOC122361452
XM_043263121.1 mRNA upstream 318111 18282076 ~ 18311121 (-) True aqr
XM_043263760.1 mRNA upstream 349716 18313681 ~ 18341936 (-) False paplna
XM_043263761.1 mRNA upstream 349716 18313681 ~ 18341936 (-) False paplna
TU179448 other downstream 2221803 15738262 ~ 15740486 (-) True G121456
TU179430 other downstream 2272495 15688891 ~ 15689794 (-) True G121438
TU179418 other downstream 2275341 15685539 ~ 15686948 (-) False LOC122361708
TU179062 other downstream 2862365 15083818 ~ 15099924 (-) True crip2
XR_006253025.1 other downstream 2935874 15010826 ~ 15026415 (-) False ptgr2
TU180335 other upstream 315500 18279465 ~ 18281572 (-) False LOC122361613
TU180588 other upstream 667292 18631257 ~ 18644980 (-) False LOC122361943
TU180607 other upstream 822917 18786882 ~ 18790880 (-) True G122247
TU180608 other upstream 826056 18790021 ~ 18790880 (-) False G122247
TU180574 other upstream 869498 18833463 ~ 18836620 (-) False LOC122362226

Expression Profile