RNA id: TU180219


Basic Information

Item Value
RNA id TU180219
length 1408
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G121980
representative False

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 18070862 ~ 18132726 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacacacacacagacacacagacacacacacactctctctcacacacacacacacacacacacacacacacattctctcacacacacagagacactctctctcacacacacacacacacacactcacacacactctcacacacacacacacacacacactctctcacacacacagagacactctctctcacacacacacacactctctctcacacacacacacacacacacactctcacacacacacacacacacacacacacacacacacacacagcttctaTGTTTAACAGTGCTGTTATTCATGGCACATATAAATGCTAAAACTAGTGAAGGGGGAACCCCGTGAAAGCCTGTCAAGaacaataaacagaaaaagatgcttaaagaaaaataattgtgaGATTATTCTCATGAAAACTAAGCTCTTCGGTCCATATtcttacaaaataattaattatgtttaaaaaaaaaaaaaaacacttcctgaGGGGTGAAATGCGACTCTGGGCAGGTTTCATAAGTTTCTCCCAATCAACAGCCCCTGCTCTCAAACCAGAAACAGACTGAACTATCTGCCCCTCCGTTCATAATCATGtgcacagaaagaaagaaataaggtCAGACCACATCACCATGCAGTCGTGAGAACATGACGAAGAAACCTCGAGTGCCGTTCtgcataaaaatagaattttcttAACCATAGACATTTAGTTGTGCTTCTTATTGCATTAAATAGACATTGTTCCCTCGAGTCAAAAGTTAAGTAAGTGCCAGCCATTATTAGGGGTTTATTGTGCAAGAAAGCTTGTTTCCACCGCAGGAGAAAAACAAAGGGGCGTTCTGCGACTTTACTGCGACTCTGACCCAACATCTCACAAccttgaagaaaaagaaaatcagactTGTGATATGTAAATTAGTTCGAAATCTGGCATAAAAAGGTGCAGTTGCCTTATTTATTAATCCGCggcagaaacaggcttccacGGTTACGACTGATTAAAGACGTCGGTCTGACCCCTAGAAATGGACGCGTGGTCTGAGACTGTGCGTATGCCTCCTGTGGGTCAGGTGCACTCTTTGgacttgttttataaaaaaataatagctatTCTCAATGACGAGGTTGGGAAGTGCAGTCTTTGCATAGTCCAGCCTCCGTCCAATCGGGAAGGAGACGTCCTAGAGGCCCGAAGCGGACGGGAAGGGCTCGGTCTGTGCTACATGGGGCTGGTGTTTTCCGCCTGGCTTGTGCTCTGCTGCTTGTATATGAAGGTCAGGAGGAAGAGGGCCACGTCATGGGACGTCCAGTAGGCCGTGTGTGAGGTCACGGCCGACCAATAGCGGCTCTCCACCAAACCCTCCCGAAGCTCGAAGTCAATGCGGTGCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180191 lncRNA downstream 124471 18005274 ~ 18005603 (-) True G121965
TU180186 lncRNA downstream 141066 17988778 ~ 17989008 (-) False LOC122361562
TU180177 lncRNA downstream 166109 17962289 ~ 17963965 (-) False acyp1
TU180178 lncRNA downstream 166109 17962289 ~ 17963965 (-) True acyp1
TU180107 lncRNA downstream 319673 17790942 ~ 17810401 (-) True G121905
TU180215 lncRNA upstream 94 18131919 ~ 18132726 (-) False G121980
TU180245 lncRNA upstream 4514 18136339 ~ 18148376 (-) True G122002
TU180228 lncRNA upstream 34932 18166757 ~ 18171026 (-) True G121987
TU180226 lncRNA upstream 41892 18173717 ~ 18212416 (-) True G121986
TU180263 lncRNA upstream 70229 18202054 ~ 18208382 (-) False G122013
XM_043262357.1 mRNA downstream 125860 17982051 ~ 18004214 (-) True LOC122361562
XM_043262438.1 mRNA downstream 166093 17962318 ~ 17963981 (-) False acyp1
XM_043262437.1 mRNA downstream 171479 17952048 ~ 17958595 (-) False fosaa
XM_043262436.1 mRNA downstream 171495 17952048 ~ 17958579 (-) True fosaa
XM_043262179.1 mRNA downstream 180836 17939741 ~ 17949238 (-) True jdp2a
XM_043262205.1 mRNA upstream 139046 18270871 ~ 18276126 (-) True LOC122361452
XM_043263121.1 mRNA upstream 150251 18282076 ~ 18311121 (-) True aqr
XM_043263760.1 mRNA upstream 181856 18313681 ~ 18341936 (-) False paplna
XM_043263761.1 mRNA upstream 181856 18313681 ~ 18341936 (-) False paplna
XM_043263759.1 mRNA upstream 181856 18313681 ~ 18341936 (-) True paplna
TU180175 other downstream 166109 17962289 ~ 17963965 (-) False acyp1
TU180176 other downstream 166109 17962289 ~ 17963965 (-) False acyp1
TU179448 other downstream 2389588 15738262 ~ 15740486 (-) True G121456
TU179430 other downstream 2440280 15688891 ~ 15689794 (-) True G121438
TU179418 other downstream 2443126 15685539 ~ 15686948 (-) False LOC122361708
TU180335 other upstream 147640 18279465 ~ 18281572 (-) False LOC122361613
TU180588 other upstream 499432 18631257 ~ 18644980 (-) False LOC122361943
TU180607 other upstream 655057 18786882 ~ 18790880 (-) True G122247
TU180608 other upstream 658196 18790021 ~ 18790880 (-) False G122247
TU180574 other upstream 701638 18833463 ~ 18836620 (-) False LOC122362226

Expression Profile