RNA id: XR_006253000.1


Basic Information

Item Value
RNA id XR_006253000.1
length 5352
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC122361655
representative True

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 18650479 ~ 18667122 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttaaatttgatcattttccaactcccttagagttaaacagttgagttttaccatttttaaatcaattcagCCAATCTTCAGATATGgtggtagcacttttagctgtagcttagcatagatcattgaatctgattagaccagtagcatctcgctcaaaaaTGTGACCAAAGTGCtatttctattttgaaaaaCTTTGCTGCCGTTCTATGAGTGCAGCAGGCGCAATGATATTATGCAGCACATAAACGTTGTGAATGGTTTTGACAAGTGTGTCTTTtggcttcctcctcctcctgtgtGACTAGCTAGTGTCAGAAGCATAAAAAGTTGCGCAGTGCCAACTTGTGTAATGggatatttctgtttttcattaagctctttttgtaaacaaattatAAGTGAAAATTGTTTGGGTATGAACAGTGAAAAACGCTGACAATATTTGCATGTTATAATGGTCCTGGTGTGTACAAGCCTttatgctaatggtctaataagatctatgctaagctacagctaaaagtgctctgCAAGACCCAGATATtgactgaatggattcaaaaaacggtaaaactcaactatTTAACTCTAGGGAAGTTAGAAAATGTGCCTATTTTCAGAAAAGTTGCACGTTCCCTTAAAGCTTAGAACACAATTTTTAACGCTTAAAccacaattctttttttctagACAGACAGGCATGTTCTGGAAGGTCCCAGCTGAAACAAATCTATATGCTCCCTCTTCCATAGGGAGAGTGGTCTAGACTCACTGGAGTGTCTGTGAAGAGTGACGGCTCTCCGGAGGATGAATTAATGAACGGGCCTGTGCGCCATCCATCCGTACCCACATGCTCAGAGAGGAGGGGGAGACGGGCTCGTGAGGGTGGgtgacacacagacagaaagcgCGTGTGCATGGGCTGCTCTTCAGGCTCAGCCACACTGGATCCAGAAGCGCGTTTGGGACGGTCTGGTCTACATCACGGTAATACTGACCTTCACCGATCTCGTTCTTAGATCAGAAAGGGTGAACGCAATATCGTACGTTTTTGAACAATAGGCTGTTCTGCTTTAGAGACTGACTGATAAGTGACGGCAAGCGCTCAGTGCTCTAAACAAAAGCCTGCTCAAAAGTTCTGTGGCagagttttaattatttctatgaaagaaaaaaatccttcaAACTGCCATGCGTTTCTTTTTGGACGGGGTAAAAAAACAGAATcgtaaaaaaatagttttatcaaaaatatcttatcaaaatgttattttcattcACTGCCATCACAAAAGAGTGCTCACCAGTTATTGGTATGCACAGTGTTCAATACGTGTTGCTTAAAACACAAGCACATACAATTTAAggtttaattttgaataaatcgTATAAAACTATATTGTCGGGGCGTCATAGTTGTGCAAATAAAAGCgttattgcatttttcttttacatttcgGCAGTGTTGGTCACGTTACtctaaaataagtaattttagttactagttacttctcacaaatagttacatcattttaaaataactaattaccAGGGAGAGTAACTATTGTTTACTTTCTAATGGCAAACTTGGAAGCCCCCAATATTAAATGGTAAATTGACACTAAAtataatcaattattattattaaacattgtaCATTCATCTACACAATTTATTTACTGACACATAGCAGTGGTCAGTCaagaattataatataaaatggttATAACAGCGTTATATGACGATAGAACTTTAGTAATCAGAATTGCAAAGTATGAATGTATATTTGTCATGTTGACCGAGTTAGGACTGCTGGTGGTGCTagtttatcattatcattaagtgtatgtataaaaaagggaggcaaaaaattataacaaaactTCTATGAATTGTACTACTACTAACAATATAAAACGCACTAACGATTAATGAGCTGCTggattcatgaatattaatcacgtaGTCAACGTTCGCTCGAATtgatttactgaaataaaaacagggcCGATAATAGGTGAGCACCAGCCAATAAGAGAGTTTTTCCGCACATAAGCTCCGCCCACTACCTGGGAAACCAATATTCAGTTCTTAAAAGATGAAGGATTCCAAACCTACGCCAttattttgacagaaaaaatacagcaaagaaTAACGTTTACATGTAGCGCGTCAATTCAGCATGTTATGAAAGACTCTCTTGCTCTATATCTTTGCGTGTGTGAGACGAACCAAAGACcacaatttgatttatttttttcagtaatgcgtaatcaatgtatttataatgccGTTATTCCCATCACTGCATTTCAGTTACCAGTTGCAACTGATAGATCAAATTTTACATCCTGTGTGGACAGCATTAGCATTACAGCCATCTAGTTTCAGTTCAAAGTAATAAACCTGCTAATGACTAgcacaaagtttaaaaaagttgtttttgttcagtgtGATTGCATTGTGGGTAACACTCCGACATACAGCACCATGGTGTCCCGAGTTCGAATCCCGACGTCAGGACCTTTCCTGAACCGGACGCGGTCTCTCATTTCCTTTGCTTCCTGTCAGCTCTGATCTGTCCTCATAATAAAGGTGAATCAGACATGAGGTAGTCTGACAACGTTGCATTTAGTCCTCCACCAACACCATTTTGCAGTCTTGCTAGCAGGGCCCTCATCGACACTGGATCCAACATTTCCATAGTCTGCTCGGGAACCCTGCCTGGAACTGAAGGGTCAACACCAACGGGTCAGCTACTATGATGCAGAGAACGGGAAGCAGACAGCCTTAAAAGGAGGAAGGCAATTTCAGGTGATGGTAGGCACAAACGTTTTCATTTGTGAGTTTTGGTTGGCTGACATAGAAAATCCTTGTATTATAGTGGGGCTTGTATTAGTGTAGCTAGGGTTTACCTTTAGATCATCTGGGAAGTCATTGCCCTACAGAAGGGGCAAGGGGCGGTTGATGCACCTTTGGGTGAAGCCAGGGGGAAAGCAAAATAGTCAAGCCCATTCAAAAGTTAGTCATGCTGTACCCTCTTGACCCCGATGTCTTTGCTTCACTTCGCCCTTAAAAAGCAGCAAGAAACCACAGCATCACCTGCAGAGAGTTGCTAGCATGGGAATGCGGGTGCCATGTCCCTCCTGCCCTGTGAGGTAATCGACTGCTGCCACCAGAGCTTCAGTTTCTCTGATGGTAGCATCTTGTTAATTTTAACCAGGCTCTTGCCTTAATTGCTGCATACTGTTAATACAGCCATGGTCAAAAATATTGGcgcccttggtaaatatgatcaaagaaggctgttaAAATtaactaatcatttattttctgcagtTCTCCAGCTGTGTTCCACTTTGGCCTCTGAAACCCTCCTCCTCACCCTGCATTAGGACAATAAAGACACACTTCCAGGCAGCAAAACGGCAGGAAACTATGAAAACAGGCATCAAGGACAAGCTATGATGAGACAGCGAAAGACTTTGTTACAAAGATCAAGTGAGAGCTGACAGGACAGACACAATGAGGGCCAAAACTACAGTGATAAGGCCAGTCGAAAAAGATCTTCCGAAGTTAAGATGGAGAATGGACAAGTGATAAGGAACCGGAAACATCTTAGATTGCAGATATGGTCCCTAGAGACTGTTGATATAAAAGAGGAGCAGCCTGCCCCAAAACTAAATCATATTCCCTGTTCAAGACATGgtaagcattatttatttacttttattacattGGGTGGAGCGGATTACAATCTGGGACTAATATTAGTTAGTTAATTGCATAATGTGTTTTCTTAAAGAATGGGTTAAAGATTGTATCTCAGCAGTAAATTATTCCCCATTCCTGTAATTGCCTGAGGCCCCCAATTCACTAAATGCGGCCCTATTTTCACTCAATGTTCTCTGTTTCCGACAGATTGTGAAATACTTCGTCATCAACAAGATTGCTAGCGGAAGCTGCTTACCGCTGTCGCTAAGCAATGAGGTGTCAATTTGTGCAAACAAAACGCTTCCCTTTTCTTATTTATGGGCCTGTGGGCTATATACTTATTGAATCAGACATGACTTTGTTAAATGTTACGCCACATAGCATTATATAAGAATATTAGAAATTGTTGTACATTAATTTGATGCATTGTAAAATTAGGgatagaaacaaaaaatatataatttaaaaaaaccaaaaatttCTCAACATTAATAGTTTCCTATGAGTGATAGGTTTAGGTGTGGCAACTGCCCCACGCTGTAAAAACCATGGAACAAGGCCTATGgaatatcaaaaaaatgtaattttttataacaATCTAAGCCCAACGTAGATGCGTGTCTTAATGTCAAATCATCACATTTGAGAAAATCCCCACATTTcctataaaactataataatgttgtagcatagtttaaattaaatgacattgaTCAAATCTGAATCAAGATGTATtgttatttagtattttatccTATAAATTAAAGGCtactgcatttgttttaatattagaTCCATGACTCCTGTAGACTGTTGTTTAAAGGTTTAAGCTTTACTCCAGAAGTATTCCAACTAATTGTTAATAATGGCTTTTTTAGGCTGTGTTCATGTATTTGAGGCTATAAAATGGGGTATTACTTGAACTATGGGCCTAAAATCAATAATGTGGAtcgcttttatttttcagataatTCTTGGATTAATGTTAGAAAGAGATGTTTTCACATTAAACTGTCAATCTGAGGCACAATGACAGGCATTCTGAGTTCCATATACTAAAGCATGTttgtgaaatgcaaaattaagttatttttcaGAGATAATTGCACACTTGTTGCATTGTGCTGCGTATCAAATATTTAATGCCAAATGCTATTATGACTTTATTCTGCAGAATGGGAAACTAACTGATGATAgctagtttaattaaaaatagatcaTCAAAAAACGGAtttggagaataaaaaaaaccaagcaTCTCCACTAGACGGTGCTGCGTTCATGTTTGGTGTAAAATGGCTTAGACTAGTGTTCGTGAGTCGCACAGGTCTTTGTGCAGTTTATTACACTTACAATTTGTAAAAGCGTGATCTTGAAATGGCAGTCAAAAGCAAAATCactctacatttatttatataaaaatacaaaacttaaaaaaaaaagtttccataGGAAAGCAATTCAGAAGCAATCCCATCTCTTTCAAATCCATTTCAAATGCTTCAGTGGCATACATTTCAGGTCAATAATACAGATTTCAggtcaaaataatattaacttaCTAATCAAGTATAAAATGGAAATGGTCACCGAGGAGGAAGATATCTGTATGAGTCTGTGTGAAGAGGAAGCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253046.1 lncRNA downstream 8057 18635014 ~ 18644992 (-) True LOC122361943
XR_006253047.1 lncRNA downstream 8476 18637050 ~ 18644573 (-) True LOC122361944
XR_006253099.1 lncRNA downstream 110802 18541333 ~ 18542247 (-) False LOC122362381
TU180447 lncRNA downstream 110883 18541215 ~ 18542166 (-) True LOC122362381
TU180438 lncRNA downstream 119073 18528886 ~ 18533976 (-) True G122140
TU180593 lncRNA upstream 3062 18667372 ~ 18668011 (-) True G122241
TU180592 lncRNA upstream 5618 18669928 ~ 18673941 (-) True G122240
TU180603 lncRNA upstream 32192 18696502 ~ 18698827 (-) False G122245
TU180604 lncRNA upstream 32192 18696502 ~ 18698827 (-) True G122245
TU180606 lncRNA upstream 34534 18698844 ~ 18700255 (-) True G122246
XM_043263484.1 mRNA downstream 36990 18605141 ~ 18616059 (-) True atp6v1c2
XM_043263843.1 mRNA downstream 50315 18599225 ~ 18602734 (-) False ccr6b
XM_043263842.1 mRNA downstream 50315 18599225 ~ 18602734 (-) True ccr6b
XM_043263143.1 mRNA downstream 263395 18373990 ~ 18389654 (-) True trappc12
XM_043263613.1 mRNA downstream 298051 18347425 ~ 18354998 (-) True psen1
XM_043263543.1 mRNA upstream 9816 18674126 ~ 18684463 (-) True exd2
XM_043262378.1 mRNA upstream 21717 18686027 ~ 18726828 (-) False numb
XM_043262377.1 mRNA upstream 21717 18686027 ~ 18726827 (-) False numb
XM_043262379.1 mRNA upstream 21717 18686027 ~ 18726827 (-) False numb
XM_043262374.1 mRNA upstream 21717 18686027 ~ 18726827 (-) False numb
TU180588 other downstream 8069 18631257 ~ 18644980 (-) False LOC122361943
TU180335 other downstream 371477 18279465 ~ 18281572 (-) False LOC122361613
TU180175 other downstream 689084 17962289 ~ 17963965 (-) False acyp1
TU180176 other downstream 689084 17962289 ~ 17963965 (-) False acyp1
TU179448 other downstream 2912563 15738262 ~ 15740486 (-) True G121456
TU180607 other upstream 122572 18786882 ~ 18790880 (-) True G122247
TU180608 other upstream 125711 18790021 ~ 18790880 (-) False G122247
TU180574 other upstream 169153 18833463 ~ 18836620 (-) False LOC122362226
TU181037 other upstream 1160149 19824459 ~ 20053139 (-) True LOC122362030
XR_006253103.1 other upstream 1500367 20164677 ~ 20164795 (-) True LOC122362403

Expression Profile