RNA id: TCONS_00009846


Basic Information

Item Value
RNA id TCONS_00009846
length 1780
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_005055
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 992442 ~ 999800 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTTCAGTGTAACACCATGAGGAAGTGAATTGTCTTTTTTTCCAGCTGATCTGTGTGTCAGATGTGTTTGTTGTCTACTCTATCCtccagacagacagatgatgagTGTGTGAACAGCCCCCCGCCTGCAGATGAGGAGGCTGGTCTTCGTCTTCTGGCTGCTGTTTTATGTGTGGTTCCTGCTGTCCATCAGGAAGATGTGGACAGGTCGGTATGTTCGCAGTCCTCTGGCCAGATCTCTCTTCATGAACATGCTGTCAGACACCGAAACGGCGGACTATGGGGACCAAAAGtGGTACCGCTGCTGTCCGGATCTGCTTGGAGAAAGCGTGAGCTCTGTGTTCGTTCAGAGTCATCTGGATGAGGAAACGCAGGCGTTTCTACAAAGGAGCGTCGAGAAGTCCAGCTGGATCTTCACTCAGCTTTACCACTCACTGTTCTCCAGCATCTTCAGCCCCATCATCTCCCGCACATCCATCAacggGTTTCTGGGCCGCGGCTCCATGTTCGTGTTCTCCAGGGATCAGTTTCGGCGTCTCCTCAGGATCGGGCCGGACTGGAGAGCGCAGCGGATGCTGGATCTGGGAGCCGGAGACGGAGGCGTCACTGAAGTCATGGGTTCACACTTTCATGAGGTCTACGCTACTGAGGTCTCCACACCCATGAAGTGGCATCTACAGCGCAAAAACTACAGGCGGGTCGTGGGTTCGGCCGAAGCAGCACATCCAGGTTCAGGGGAAGAGCTGGGAGGAGCAGGTGACGCACCTGAGCACGCAGGTGTTCCCGCAGGTGGGTTTGGAGCTGCAGGCCGTCACGCGTCTGCCGTATCTGTGTGAAGGAGACATGTACAGAGATTATTACGTGCTGGACGACGCCGTCTTCATCCTCAAACCACTCaaacactgacacaaacactgaCTGACAACTCCAACCAAAGGGCTGACGCAACTCAGGAAAACATCAACATTATTCAATCAGAGTCAGGCAGATGACGGACTGCAGAGTTTCCTTTGGGAACGGAATAAAGATTCAGTGGAAACGTTTAGAGAAATCTACTTATTATTTGGTCTAATTACAGgtaaatgattagccctcctgtgaaatttaatatgaatatttcCTGATAATGTTATCAAATATTTAGGTGCTGTTTAATAAATAcggtttaaagaaattaaaacgcAGAAGTATGGAAAAACATATAcctgtagtcaacatttgaagttgaTTTAAGATATTATTATAGTATAATTAACAAAGTACAAATGTTTATACATTGATCCTGTATGTTACTGATTAAATATCGGTATTGTTCAAtacacacttttattttaaaggttttaattCTTGTTAAATGTTGATTGCTGAAGTTATTCTGAAGTAATAACTGCAGATCCTCATGGTGTGTGTCtctaatatgttattattattgttacatgttttctgtcaGTCTGAACAGAACTTTTGATGAGTCTGAAACATCGTAGGACCAAGTTAAGACATTATTAAATGATGTCTGCTGTTCATTGCACAACACAGCGAGAGTCTAAACATGCATTTGCAGTATGTAGGTTCTGGTTAAGTTCATGTTTTCCTTGTGTATTAGGTATGTGCTGATTTTATCGATCGTGTGTTCACTGTGCAATAAATCTCCTTGAACTTGATGATGAGGTGAGAGGAACTCGTTTGTTATATAATAAAATCTAGTTTATTAgttaaatgcttgttttgttagacaattaaatgcattaaattgaaaGCCAAAGCTAGCAAATTAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-752 Is expressed in solid lens vesicle. Orthologous to human METTL9 (methyltransferase like 9).

Ensembl:

ensembl_id ENSDART00000084076

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009826 lncRNA downstream 528453 461129 ~ 463989 (-) True XLOC_005045
TCONS_00011054 lncRNA downstream 583811 406187 ~ 408631 (-) True XLOC_005043
TCONS_00011053 lncRNA downstream 636887 337808 ~ 355555 (-) True XLOC_005042
TCONS_00011052 lncRNA downstream 636911 337808 ~ 355531 (-) False XLOC_005042
TCONS_00011051 lncRNA downstream 727241 262396 ~ 265201 (-) True XLOC_005038
TCONS_00011055 lncRNA upstream 72691 1072485 ~ 1077114 (-) False XLOC_005057
TCONS_00011056 lncRNA upstream 453106 1452900 ~ 1453339 (-) True XLOC_005062
TCONS_00011057 lncRNA upstream 1000225 2000019 ~ 2001490 (-) True XLOC_005067
TCONS_00011058 lncRNA upstream 1000842 2000636 ~ 2001824 (-) True XLOC_005068
TCONS_00011059 lncRNA upstream 1068169 2067963 ~ 2073187 (-) False XLOC_005069
TCONS_00009845 mRNA downstream 2293 982796 ~ 990149 (-) True XLOC_005054
TCONS_00009844 mRNA downstream 12653 964760 ~ 979789 (-) True XLOC_005053
TCONS_00009843 mRNA downstream 31428 899223 ~ 961014 (-) False XLOC_005052
TCONS_00009850 mRNA upstream 14624 1014418 ~ 1034460 (-) False XLOC_005056
TCONS_00009851 mRNA upstream 15489 1015283 ~ 1031970 (-) False XLOC_005056
TCONS_00009852 mRNA upstream 28786 1028580 ~ 1034383 (-) True XLOC_005056
TCONS_00009853 mRNA upstream 72692 1072486 ~ 1085227 (-) True XLOC_005057
TCONS_00009854 mRNA upstream 338547 1338341 ~ 1345562 (-) True XLOC_005058
TCONS_00009831 other downstream 370153 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009859 other upstream 490678 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009912 other upstream 3286572 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 3295755 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 3298063 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 3298433 4298227 ~ 4301376 (-) True XLOC_005113

Expression Profile

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