RNA id: XM_043262251.1


Basic Information

Item Value
RNA id XM_043262251.1
length 2407
RNA type mRNA
GC content 0.51
exon number 14
gene id rps6ka5
representative False

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 15483111 ~ 15505931 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCAGAAGGCGAAGACGGCGGAGCACACGCGCACCGAGAGACAGGTCCTGGAGCATATCAGACAGTCTCCTTTCCTGGTTACGCTCCATTATGCCTTCCAGACAGACACCAAACTGCATCTCATTCTAGctgggAATCGTCTACAGAGACCTAAAACTTGAGAACATACTTCTGGATTCAAACGGCCACATCGTGTTGACAGACTTTGGCCTTAGTAAGGAGTTTCACGAGGTAGAGAGGGCTTATTCCATCTGCGGCACTATCGAGTACATGGCTCCTGAGATTGTAGCCGGAGGAGAGTCAGGACATGACAAGGCAGTGGACTGGTGGAGTATGGGAGTTCTGATGTATGAGCTGTTGACCGGAGGCTCTCCTTTCACTGTCGATGGAGACgagaactctcattctgacatTGCTgaGAGAATCATGAAAAAGGATCCTCCTTTCTCCAAAGACATGGGGTCTCTGGCCAAAGACATTATACAGCGACTGCTTATTAAAGACCCAAAGAAGAGGCTGGGCTCCGGGCCTTCAGGGGCCCTGAATGTGAAAAGCCATCCATTTTACCAGAAAATGAATTGGGAGGATCTAGCTGCTAAGAAGGTTCCGGCTCCGTTTAAGCCAGTGATTCGTGATGAACTGGATGTTAGCAACTTTGCTGAGGAGTTTACGGAGATGGACCCAACGTACTCCCCAGCGGCTCTTCCAAACAACTGTGACCGCATCTTCCAGGGCTATTCCTTCATGGCTCCTTCCATCCTGTTTAAGAGGAATGCTGTGATGGACGACCCGGCTCAGCTGTGCGGCGGCTCGGAGAGGCCGGGCTCTGCCGCTGTTGCCCGTAGCGCTATGATGAAGGACTCTCCGTTCTACATGAACTATGAGATGAATCTGAGAGAGAACGCTCTGGGAGAGGGAAGCTTCTCCATCTGCAGACAGTGCACTCACAAAAAGACCGGACAGAAATACGCCGTAAAGATCGTCAGTAAAAGAATGGAGgcacagacacagaaagagaTCGCTGCCCTCAAACTGTGTGATGGACACCCCAACATAGTCAAGCTACATGAGATCTACCATGACCAGCTGCACACGTATCTTGTTCTGGAGCTCCTGCAAGGTGGAGAGCTTCTGGAGAGGATCAGAAGGAAGCAGCACTTCAGCGAGACGGAGGCCAGCCGCATCATGCGCAGGCTGGTGTCTGCCGTCAGCCATATGCATGACGTCGGTGTGGTGCACAGGGACCTCAAACCTGAGAATTTGCTCTTCACGGATGACACTGAGAATTCGGAGATTAAAGTCATTGACTTCGGCTTTGCGCGGCTCAAACCCCCCGACAATCAGCTCTTGAAGACCCCCTGCTTCACTCTTCAGTACGCTGCACCAGAAATCCTCAAATATGACGGTTATGATGAGTCCTGTGACCTCTGGAGTTTAGGAGTTATTTTGtataCAATGCTATCTGGCCAGGTCCCATTTCAGTGCCACGGGAAGAGTCTAATGCACACCACTGCAGAAGAAATTATGAGGAAGATCAAACAAGGAGACTTCTCTTCCGAAGGCGAGGCCTGGAAGAATGTGTCAAATCAGGCCAAAGATCTGATACAAGAGCTGCTGACGGTGGACCCTGACAAGCGGATAAAAATGTGTGGCCTACGCTATAACGCCTGGCTGCAGGACGACAGTCAGCTCTCTTCCAATCCTCTCATGACCCCTGACATCCTGGGATCTTCTACCATATCAGTGCACACCTGCGTCAAAGCCACCTTTaatGCCTTTAATAAGTGTAAGCGGGAGGGCTTCCGACTCCAGACAGTTGATAAGGCTCCTTTGGCCAAACGCAGAAAGATGAAGAAGACCAGCACCAGCACAGAGACCCGAAGCAGCTCCAGCGAGAGCACACACtcatcatcctcttcctccCATTTTCAGGATAAGACACCGCCAGGTGGAGAGACGGCCATTATTCCCCAGGCCTCTTTGAGCACACCTCTCACTCTGGGCCCTGAAGACGAGCCCTCTCAGGGCGAACCCCAGCCTGCCTTCACATTCACCGAGTAAATCCGTCTTGAGAGTCAGGCAACGGAATAGGTTACGTAATTAGTATGCATAATTATCCCACTGTTTTTCTCCTCGCGCTCTGGCGACGCGGTACAACTCCTGAATTTGCATGCTGGGACCGACTCAAATCCATCACTAGCAATAGACGCATACCGTGAGTGGCTGAAGCATACCATGAGCTTGAGAGAACTTTTAGCTCAAGTCCTGCATGGCGAAAAATCACTGCATCCAGTCCAGTGTCTCAAACAGGAGGGAAAACTTCAAACCATCCACTGGTGGTGGAAAAAAGTCTGCTTCTGCAGTGTCCTGAAAGACCAGGCACTTTTCTTTGGGCAAAAAAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179226 lncRNA downstream 67958 15414869 ~ 15415153 (-) True G121326
TU179224 lncRNA downstream 70408 15412465 ~ 15412703 (-) True G121324
TU179223 lncRNA downstream 71851 15411042 ~ 15411260 (-) True G121323
TU179222 lncRNA downstream 77471 15402641 ~ 15405640 (-) False pax9
TU179219 lncRNA downstream 87003 15395897 ~ 15396108 (-) True G121321
TU179246 lncRNA upstream 14249 15516936 ~ 15518082 (-) True G121343
TU179414 lncRNA upstream 98579 15601266 ~ 15678209 (-) True G121427
TU179416 lncRNA upstream 180974 15683661 ~ 15685366 (-) False LOC122361708
TU179442 lncRNA upstream 210723 15713410 ~ 15720323 (-) True G121450
TU179457 lncRNA upstream 257845 15760532 ~ 15762485 (-) False LOC122362003
XM_043262168.1 mRNA downstream 76608 15398795 ~ 15406503 (-) True pax9
XM_043262169.1 mRNA downstream 77223 15397788 ~ 15405888 (-) False pax9
XM_043262852.1 mRNA downstream 264941 15212872 ~ 15218170 (-) True zfp36l1a
XM_043263362.1 mRNA downstream 383154 15083987 ~ 15099957 (-) False crip2
XM_043263641.1 mRNA downstream 418433 15060054 ~ 15064678 (-) False crip1
XM_043262625.1 mRNA upstream 180975 15683662 ~ 15688440 (-) True LOC122361708
XM_043263240.1 mRNA upstream 257656 15760343 ~ 15767015 (-) True LOC122362003
XM_043262882.1 mRNA upstream 346778 15849465 ~ 15858684 (-) True LOC122361840
XM_043262883.1 mRNA upstream 346778 15849465 ~ 15857232 (-) False LOC122361840
XM_043262880.1 mRNA upstream 346778 15849465 ~ 15857232 (-) False LOC122361840
TU179062 other downstream 383187 15083818 ~ 15099924 (-) True crip2
XR_006253025.1 other downstream 456696 15010826 ~ 15026415 (-) False ptgr2
XR_006253090.1 other downstream 643298 14812920 ~ 14839813 (-) False myo6b
TU178546 other downstream 2283084 13196907 ~ 13200027 (-) False LOC122361883
TU178308 other downstream 2662443 12817192 ~ 12820668 (-) True G120660
TU179418 other upstream 182852 15685539 ~ 15686948 (-) False LOC122361708
TU179430 other upstream 186204 15688891 ~ 15689794 (-) True G121438
TU179448 other upstream 235575 15738262 ~ 15740486 (-) True G121456
TU180175 other upstream 2459602 17962289 ~ 17963965 (-) False acyp1
TU180176 other upstream 2459602 17962289 ~ 17963965 (-) False acyp1

Expression Profile