RNA id: XM_043262299.1


Basic Information

Item Value
RNA id XM_043262299.1
length 1892
RNA type mRNA
GC content 0.49
exon number 1
gene id sox11a
representative True

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 14509772 ~ 14511663 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGAACAGTGTCCAAGCGCCACCTTCAGTATTTTATTAAGAGAGAGCGTGGAGCGACAGAAAACAGCTTCCGCACGCAAACGTTTTCACAAAGTGCGACTCGCGCCCGTCGTGCAGGATTCCGAAACGTTTGGTGCGAGTGGTTTGTTTGgtttcgctttttttttaacgtgtTGACACTCGCGTTCTTGTTCGGTTTATCCGGTGACGCGCGCGTCTCGCGCAGCGTGGGTCCAGACGGGAGCGCGTTAAGGGTTAAAACGCGCCGCATGGAGTCTGTAGGGCGGAGCGGAGAGGATGTGATTGGAGCGCTACCCATGATGTCATGTACATGAAAAAGCCAAGAAGTAGTTAAGAAGGCGGCTTGTAACTCTGGAAAGAGTGGGTGAACCTCTGAGGCGCAGAGAGCAGACGCACGCGGGTGATATTTTGGACTGACAACACACGGCGACGGCACCATGGTGCAGCAAACGGACAACAGCGAAACGGACAGCATGTCTAGAGAAGCCACCGACTCCGACGAAAGCGAATTCATGGTTTCGATAAACCCAGACTGGTGCAAGACAGCGACCGGACACATAAAGCGACCGATGAACGCGTTTATGGTGTGGTCTAAAATCGAGCGGAGAAAGATCATGGAACAGTCTCCAGACATGCACAACGCCGAGATCTCCAAACGCTTGGGGAAGCGCTGGAAAATGCTGAAGGACAGCGAAAAGATACCTTTCATCAGGGAAGCCGAAAGGCTCCGGTTGAAACACATGGCTGATTACCCCGACTACAAATACAGACCCAAGAAGAAACCAAAGCTGGACAGTTCCTCCAAACCCTCAGCCCCGTCTCCAGAGAAGTCCTGCAACAAAATGTCCAAGAGCTCCAAGAAATGTCCCAAACTGAAAGCGAACAAGGCGGGAAGCAAGTCGTCTCACGGCTACGGAGACGAGTACGCGTTTAAGAGCACGAAAGTTTCAAAGACTGTCATTAAAAGTGAATTCACGGACgaagacgacgacgacgacTCCGAGGAGGACTCCTCTCGAGTCCGAgtgaaggaggaggaagaggatcCGGTCCGAGCCTACAATGTAGCAAAAGTTCCCGCCAGCCCAACTTTGAGCTCGTCTACAGAGTCCGAGGGCGCCAGCATGTACGAGGAGGTCCGGAACAACAGACTCTTCTACAATTTCAAAAACATCACCAAGCAGAGCACAATGTATCCCGCATCCGTCTCACCAGCATCCTCTAGGTCGGTTTCCACTTCTTCCAGCTCGAGCGAAGACGCGGACGATTTGCTTTTTGACTTCAGTTTGAACTTCGCCTCCTCCGCGCAAAGCTCGGAACTGGGCAACCAAAACCCAGGgaatctctccctctctctggtGGATAAGGAGTTGGAGTCTTTTAGCGAGGGCAGCCTGGGCTCCCACTTTGAATTTCCAGACTATTGCACGCCTGAGCTCAGCGAAATGATAGCTGGGGACTGGCTCGAAGCGAACTTTTCTGACCTGGTTTTTACATACTAAATAAGACGAGTAATAACATACGGGAGAGGTATAATGCTCTGTTCTGTACGTATTTCTTTCCTCTGCCTTCTTCTGGTGGTCCACATATAGGGGCTTTGCGAAGGAGGCAAGTATGGCAAGccgttttaacatttatttcttccAACGACGTAGTGTCTGTGCTTGTgtctagtattttttttttcattacaagtAAGTATTCCAAAGGTgactatactatactatttaGTTTATAGTATTACAGTGCTACTACTCACTATTCCAGTAGCCTACTTGTTACACTAGTTTACTTGCCAGACTAGTCAGAGTAGGGTCTTaatattgcaattattattttaataatgcaaaagtaacaactttttagttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178856 lncRNA downstream 52983 14451623 ~ 14456789 (-) True G121069
TU178834 lncRNA downstream 117730 14391384 ~ 14392042 (-) True G121051
TU178735 lncRNA downstream 420897 14088640 ~ 14088875 (-) True G120989
TU178715 lncRNA downstream 523553 13981547 ~ 13986219 (-) False kidins220a
TU178729 lncRNA downstream 533546 13975747 ~ 13976226 (-) True G120983
TU178876 lncRNA upstream 207896 14719559 ~ 14724754 (-) False LOC122361652
TU178903 lncRNA upstream 265223 14776886 ~ 14777109 (-) True G121096
TU178951 lncRNA upstream 279266 14790929 ~ 14792068 (-) True G121123
TU179090 lncRNA upstream 528060 15039723 ~ 15045366 (-) True G121214
TU179061 lncRNA upstream 548330 15059993 ~ 15064671 (-) True crip1
XM_043262974.1 mRNA downstream 103096 14399105 ~ 14406676 (-) True LOC122361878
XM_043263234.1 mRNA downstream 111987 14392403 ~ 14397785 (-) True LOC122361997
XM_043262946.1 mRNA downstream 299895 14206780 ~ 14209877 (-) True rsad2
XM_043262950.1 mRNA downstream 305245 14173271 ~ 14204527 (-) True rnf144aa
XM_043262482.1 mRNA upstream 197828 14709491 ~ 14733577 (-) True LOC122361652
XM_043263805.1 mRNA upstream 223498 14735161 ~ 14740548 (-) True colec11
XM_043263806.1 mRNA upstream 223498 14735161 ~ 14740541 (-) False colec11
XM_043263804.1 mRNA upstream 223498 14735161 ~ 14740173 (-) False colec11
XM_043263712.1 mRNA upstream 280523 14792186 ~ 14839813 (-) False myo6b
TU178546 other downstream 1309745 13196907 ~ 13200027 (-) False LOC122361883
TU178308 other downstream 1689104 12817192 ~ 12820668 (-) True G120660
XR_006253087.1 other downstream 2568759 11918290 ~ 11941013 (-) False evla
TU177874 other downstream 2705059 11800703 ~ 11804713 (-) False alkal2b
TU177672 other downstream 3191531 11303115 ~ 11318241 (-) False ush2a
XR_006253090.1 other upstream 301257 14812920 ~ 14839813 (-) False myo6b
XR_006253025.1 other upstream 499163 15010826 ~ 15026415 (-) False ptgr2
TU179062 other upstream 572155 15083818 ~ 15099924 (-) True crip2
TU179418 other upstream 1173876 15685539 ~ 15686948 (-) False LOC122361708
TU179430 other upstream 1177228 15688891 ~ 15689794 (-) True G121438

Expression Profile