RNA id: XM_043262374.1


Basic Information

Item Value
RNA id XM_043262374.1
length 3532
RNA type mRNA
GC content 0.53
exon number 11
gene id numb
representative False

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 18686027 ~ 18726828 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCAGACTGACCCCGCCCAGCGCAGATCAGCGGCGGACGGCTGGCCGAACCCGGCGAACAGTCACTCAGGATCGGGACACGCGCACGCAGACAGCCCGCCGAAGAGCTCCGGCGGGATCCAGCCATATCTTGgggaatataacattttattttcctggTCGTGTAAATCTCCGCATCTCTCTGACCGGGTTCACTCACTTCACCCGTGGATATCTGAGCCGCCGCTGAACAGGAGGAGGTTGAGCGATGAATAAGCTACGGCAGAGTTTCCGGCGAAAGAAAGACGTTTACGTGCCAGAGTCCAGCCGGCCGCACCAGTGGCAGACAGACGAGGAGGCCGTTCGTGGGGGCAAATGCAGCTTCGCTGTcaagTACCTGGGGCACGTGGAGGTCGAGGAGTCTCGTGGCATGCACATCTGCGAAGATGCCGTCAAGAGATTGAAGACGGACAGAAAGTTCTTCAAGGGCTTCTTTGCAAAAGCCGGTAAGAAGGCCGTGCGAGCCGTGCTCTGGGTGTCTGCGGATGGTCTGAGGGTCGTAGATGACAAGACAAAGGATCTCATTCTGGACCAGACGATAGAGAAGGTTTCCTTCTGTGCACCGGATCGTAACTTCGAGCATGCCTTCTCCTACATCTGCAGAGACGGGACCACGCGCCGCTGGATCTGCCACTGCTTCATGGCCATCAAAGACTCGGGCGAGCGTCTGAGCCATGCGGTGGGCTGTGCGTTCGCAGCGTGTCTGGAGCGCAAACAGAAGAGGGAGAAGGAGTGCGGGGTCACGGCCACCTTCGACGCCAACCGCACCACTTTCACACGGGAGGGATCCTTCCGCGTCACCACAGCCACGGAGCAGGCCGAGCGAGAGGAGGTCATGAGACAACTGCAGGATGCCaagaaagACTCCGAGGGTGTGCTGGGCAGCTCTTCTGTGAGCGTGTCTAACCCTGTGGTCACCCTCGCCGGACCCAACGGCTCGTCGTCCTCCCCTCCTCTGCCCATGGCCTCGCTGGCCCCTCAGGAAGCCAATCCTCACGCCATCCCTCGACGGCACGCGCCGGTGGAGGCTCTCGCGCGCCAGGGCTCGTTCAGGGGCTTCCCTGCGCTCAGCCAGAAGACCTCTCCCTTCAAACGGCAGATGTCGCTGCGCATGAACGAGCTGCCCTCCACCATGCAGCGCAAGTCTGACTTCCCCATCAAAAACACTGtgCCGGAGGTGGAGGGTGAGAGCGACAGCATCAGCTCTctgtgcactcagatcacaTCCACCTTCAGTGGACCTCCAGAGGACCCGTTCTCCTCAGCGCCGATGCCCAAACCCTCCTCCTCACCCCAGTCACCCTCTGCTCCAGTTAACGGTGCAGTTCCTGCCTTCCCGCCGCCTAGTGTCACTGTAACTGATGCAGCTAACTCGCCCGTGCTGCCGCCCCCGCTGCCTGTCCGAGAGACTAACCCCTGGGCCAAGACCCCAAACACAGCCCCCATTGCAGCACACATAGGGAGTGAGTGGCCAAATGCTGCACCTACAGCGGGAGCCCTACCCACCGTCAGTGCAAATCTTTCTACACCTGCCTTCTCTCACAAACGTACGCCATCGGAGGCTGACCGCTGGCTGGAGGAGGTGTCCAAGTCTGTGCGAGCCCACCAACCCGCTGCCGTCACGAGAACCAACACGCCTCCCGCTCAGCAGCCCTTCTCCGCCCCTGCCCCCGTTCCCGTCCCTATGCCACCTGGCCCTTCTGCACCCTTCATGCCAGGCATCCCTCCATCTGCGGTCCCTACCGTACCTCCACGCCAGCCGGCTTACCACGCTCAGGCACCGGTGTCCTTTCCAGTTTCTAATGGGATCCCGTTTGTGCAACCAGCCTTTCCGGTGGTAGGCATTACACCTGCACAGATGGTGGCCAACGTTTTCGGTTCTGCCACGCAATCTCAGCCTATCCCGGTACCTGTTCAGGTGCCCCAGGGGCAGATGCAGTCTTCACCCTTCTCCACACCACCGACAGGCCAGTTTGAGACCCAGGCGGTGTGCAGCCCCTTCGGCAAACCACTCCTACCTCCAGTGACAAATGCCACAGCACTGCAGCCACCGAAAGTCAACGCCACATTTAATGGGGCTAAAAGCTGGGCGGCAGTGTCGTCACCCGGGCAACCTGGAGCAACTCAGCATCAGGCCGATGCCTTTGAGGCCCAGTGGGCCGCACTGGAGAGCCGCTCGCAGCAACGCACTGCTCCATCACCCACAAACCCCTTCTCCACTGAGCTCCACAAGACTTTTGAGATCCAACTCTAAGGACACAGAGTGCACGCAAAGCGATGCTAAGGAACAATACGATGGATATTCATGGAGAGACATCTATAGAGGGTACGACCCTGCAAACCACTTCAGCTCCATATCTCCGTCTTTCGATTTCTTTGTCTGTTCATCCGTGTCTGGTTTTTGCTTGTGACATGAACAAATGGAGACAAGGGGGTCAATGAAGGTGCCCCCCAGAAACGACGCGAGTACAACTTTTATGGCATTCATGGCGCATTTAGGTCCAAGATGAATTGAGGTGACAAGATGATGGTAAAAGAAATCTTTAGATGCTCTAACGTTGACCCCGTATTGTTCAGTGCTCCCTCTCCCCTGACTAATCCTTCTCACAGCGCCCCCTAGCAGGCTGGATGACTGCTCCCTACCTAAAGGACGAGGCACTTCACGGACCTTCCGGGTTCACAAGGTTCTTGTAGAACTTCGCAATCAGAAGAGGAAGAAGCGAGAGAATgccaaaatctttatttttatgcattaggtatattttaaatagttttgaaatttaaCTGAAGAGCTGTAAATAATCTTTCCAAAGGTGCAGGCTTATTTTGTGTGCATACGGTAACAGAGCATATATAGGCGTGAAGGGACGGTTTTCATTTCTCGTCTCTATTCGGTTTAAGTCTTCTGGCCACCAAGCATAGTTCATCTTATGTAAATAGATAATCCATTATGGACCCAGACTGGGTTCGAGGATCTTTAAATCACACCGGTCCCAGGCAATGCTATCTGTCtttcattctgtcattttaacCTTATTTTTTGTACTATAGTATGAGTACTTTGATTTCTATTGCCTAcatatcattataattttttagcacattttttaattaattttaacactATTGACAGTGTTACCTGTCAagccacttttattttatttcgatAAGAAGATACTCATTTTAGCACAAGCACTGTACTAATCAATCATTTGGCCACCTACGGTTGATGTGACATCGGTCTGTGGCGTGTGAGCTATGACTCTCACTCTTGAAATTACCTGTGTTTCCAATTCTACAATGATtgcagtgaatttttttttctgctgcttttCATGCAATCCCataaaaccttttgttttatCAGACGTAAAGATGAACGGTCCTGTTTTTAGGTTTTGATTCCATTTTGTAAGTATTGCATTGTATTATTCCAATTCTTTACGGAAAATTTAATCTAAAAGATTGAATAAAACGTTGGTGGTAGAGGAAA

Function

GO:

id name namespace
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0016323 basolateral plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180592 lncRNA downstream 12086 18669928 ~ 18673941 (-) True G122240
TU180593 lncRNA downstream 18016 18667372 ~ 18668011 (-) True G122241
TU180577 lncRNA downstream 18905 18663164 ~ 18667122 (-) False LOC122361655
XR_006252999.1 lncRNA downstream 21717 18653049 ~ 18664310 (-) False LOC122361655
XR_006253018.1 lncRNA upstream 288770 19015597 ~ 19020095 (-) True LOC122361748
TU180637 lncRNA upstream 294170 19020997 ~ 19022185 (-) True G122270
TU180642 lncRNA upstream 299953 19026780 ~ 19066968 (-) True G122274
TU180711 lncRNA upstream 411699 19138526 ~ 19138826 (-) True G122334
TU180713 lncRNA upstream 420504 19147331 ~ 19157588 (-) False ralgapa2
XM_043263543.1 mRNA downstream 1564 18674126 ~ 18684463 (-) True exd2
XM_043263484.1 mRNA downstream 69968 18605141 ~ 18616059 (-) True atp6v1c2
XM_043263843.1 mRNA downstream 83293 18599225 ~ 18602734 (-) False ccr6b
XM_043263842.1 mRNA downstream 83293 18599225 ~ 18602734 (-) True ccr6b
XM_043263143.1 mRNA downstream 296373 18373990 ~ 18389654 (-) True trappc12
XM_043263542.1 mRNA upstream 67762 18794589 ~ 18815103 (-) True LOC122362202
XM_043263573.1 mRNA upstream 92836 18819663 ~ 18836614 (-) True LOC122362226
XM_043263265.1 mRNA upstream 110987 18837814 ~ 18839240 (-) True LOC122362021
XM_043263267.1 mRNA upstream 134145 18860972 ~ 18864442 (-) True LOC122362022
XM_043262684.1 mRNA upstream 160724 18887551 ~ 18917490 (-) True LOC122361744
TU180588 other downstream 41047 18631257 ~ 18644980 (-) False LOC122361943
TU180335 other downstream 404455 18279465 ~ 18281572 (-) False LOC122361613
TU180175 other downstream 722062 17962289 ~ 17963965 (-) False acyp1
TU180176 other downstream 722062 17962289 ~ 17963965 (-) False acyp1
TU179448 other downstream 2945541 15738262 ~ 15740486 (-) True G121456
TU180607 other upstream 60055 18786882 ~ 18790880 (-) True G122247
TU180608 other upstream 63194 18790021 ~ 18790880 (-) False G122247
TU180574 other upstream 106636 18833463 ~ 18836620 (-) False LOC122362226
TU181037 other upstream 1097632 19824459 ~ 20053139 (-) True LOC122362030
XR_006253103.1 other upstream 1437850 20164677 ~ 20164795 (-) True LOC122362403

Expression Profile