RNA id: TCONS_00009849


Basic Information

Item Value
RNA id TCONS_00009849
length 1058
lncRNA type retained_intron
GC content 0.52
exon number 4
gene id XLOC_005055
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 992442 ~ 999800 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGATGTGTTTGTTGTCTACTCTATCCtccagacagacagatgatgagTGTGTGAACAGCCCCCCGCCTGCAGATGAGGAGGCTGGTCTTCGTCTTCTGGCTGCTGTTTTATGTGTGGTTCCTGCTGTCCATCAGGAAGATGTGGACAGGTCGGTATGTTCGCAGTCCTCTGGCCAGATCTCTCTTCATGAACATGCTGTCAGACACCGAAACGGCGGACTATGGGGACCAAAAGtGGTACCGCTGCTGTCCGGATCTGCTTGGAGAAAGCGTGAGCTCTGTGTTCGTTCAGAGTCATCTGGATGAGGAAACGCAGGCGTTTCTACAAAGGAGCGTCGAGAAGTCCAGCTGGATCTTCACTCAGCTTTACCACTCACTGTTCTCCAGCATCTTCAGCCCCATCATCTCCCGCACATCCATCAacgggtaacacacacacacagtcagcttCACGACTCGCTGTTGTCCAGCATCTTCAGCCCTCATCTCctgtatatacacatgtatatgcACAGTGTTATTATTCAAAACTCTTTacttaaagtgtttgttttttttaaatataattagacAACAATAATTATCTAGAAGATTCTGTGTATATTCTGTGATGGCACtcggctggatgtacattatcccttGTTTTGGTGTGTGTCTGCAGGTTTCTGGGCCGCGGCTCCATGTTCGTGTTCTCCAGGGATCAGTTTCGGCGTCTCCTCAGGATCGGGCCGGACTGGAGAGCGCAGCGGATGCTGGATCTGGGAGCCGGAGACGGAGGCGTCACTGAAGTCATGGGTTCACACTTTCATGAGGTCTACGCTACTGAGGTCTCCACACCCATGAAGTGGCATCTACAGCGCAAAAACTACAGtctgcTGGGTATCGATGAGTGGCAGTGCACCGGTCTCCAGTATGATCTGATCAGCTGTCTGAATCTGCTGGATCGCTGTGACGAGCCGCTGAAGCTCCTGCAGGACATCAGGAGTGCGCTGGTGCCCGAAACGGGACGCCTCATCCTGGCCGCGGTGCTGCCCTTTCAGCCTTATGTGGAGACGGG

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-752 Is expressed in solid lens vesicle. Orthologous to human METTL9 (methyltransferase like 9).

Ensembl:

ensembl_id ENSDART00000152558

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009826 lncRNA downstream 531841 461129 ~ 463989 (-) True XLOC_005045
TCONS_00011054 lncRNA downstream 587199 406187 ~ 408631 (-) True XLOC_005043
TCONS_00011053 lncRNA downstream 640275 337808 ~ 355555 (-) True XLOC_005042
TCONS_00011052 lncRNA downstream 640299 337808 ~ 355531 (-) False XLOC_005042
TCONS_00010788 lncRNA downstream 719035 253007 ~ 276795 (-) True XLOC_005037
TCONS_00011055 lncRNA upstream 72749 1072485 ~ 1077114 (-) False XLOC_005057
TCONS_00011056 lncRNA upstream 453164 1452900 ~ 1453339 (-) True XLOC_005062
TCONS_00011057 lncRNA upstream 1000283 2000019 ~ 2001490 (-) True XLOC_005067
TCONS_00011058 lncRNA upstream 1000900 2000636 ~ 2001824 (-) True XLOC_005068
TCONS_00011059 lncRNA upstream 1068227 2067963 ~ 2073187 (-) False XLOC_005069
TCONS_00009845 mRNA downstream 5681 982796 ~ 990149 (-) True XLOC_005054
TCONS_00009844 mRNA downstream 16041 964760 ~ 979789 (-) True XLOC_005053
TCONS_00009843 mRNA downstream 34816 899223 ~ 961014 (-) False XLOC_005052
TCONS_00009842 mRNA downstream 34816 899223 ~ 961014 (-) False XLOC_005052
TCONS_00009841 mRNA downstream 34816 899223 ~ 961014 (-) False XLOC_005052
TCONS_00009850 mRNA upstream 14682 1014418 ~ 1034460 (-) False XLOC_005056
TCONS_00009851 mRNA upstream 15547 1015283 ~ 1031970 (-) False XLOC_005056
TCONS_00009852 mRNA upstream 28844 1028580 ~ 1034383 (-) True XLOC_005056
TCONS_00009853 mRNA upstream 72750 1072486 ~ 1085227 (-) True XLOC_005057
TCONS_00009854 mRNA upstream 338605 1338341 ~ 1345562 (-) True XLOC_005058
TCONS_00009831 other downstream 373541 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009859 other upstream 490736 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009912 other upstream 3286630 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 3295813 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 3298121 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 3298491 4298227 ~ 4301376 (-) True XLOC_005113

Expression Profile

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