RNA id: XR_006252988.1


Basic Information

Item Value
RNA id XR_006252988.1
length 2996
RNA type transcript
GC content 0.46
exon number 18
gene id aspg
representative False

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 20757716 ~ 20770229 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGAGCCGCTCGGTTTGGGGAACGCTATAAGCGAGTCGGATATGGCGGAATGGAAACGCACTACGTCGGCTCCGTCTTCAGCAAGCATGACCTCGCTGGGTCGAGCGCTGTCTCGCAGCAGGTTAAGTCAGCCAGAAGGGTTTCAGTCACAGAAGTCCCTGAGCCGGGGCGCCGCGGGTCAGACTCGCAGGAGGTTCTCCAGCAGTTCCGAGTCTCCTCCTGATGTGAGCCCAAATGTCGAGGCGAGGGTCCTGGTCATAAACACCGGCGGAACCATTGGAATGACGTATCATAATAACGTTCTGTCTCCAGAACCTAATGCTTTCGTCGCAACTCTACGCAAGCTCCCCATTCTGCATGATGAGCAGTACGCACAACAGACCAGACTGTATGAATACTACAAGCCTCCTGAGAACACGCTGGTGCTGCCACTGTCCAAACAGAACAAGAGGATAGTATACACAGTTTTAGAGTACTCTCCCCTCCTCGACTCCTGCAATATGACCACGGATGACTGGGCCACTATTGGAAAAGACATCGAGAAACACTATGAGCAATATGATGGTTTTGTGATCCTGCACGGCACAGACACAATGGCTTACACCGCCTCTGCCTTGTCCTTCATGTGTGAGAACCTGGGAAAGCCTGTCATCCTCACCGGCTCGCAGGTGCCCATCTATGAGATGAGGAATGATGGGAGGGACAACCTCATGGGGGCGCTTTTGATAGCAGGACAGTTTGTCATCCCTGAGGTTTGCCTATATTTTCATCATAAGCTGTACAGGGGCAACCGTGTCACCAAAGTGGATGCTGAAAGTTTCAAAGCGTTTACCTCACCGAACCTGCCGCCCTTAGCCAATGCTGAAGTCGACATCAAAAttAACTGGGATACTGTGTGGAGAGCCAACACAACCTCCAGATTCACTGTTAACACACAAATGAACCGTAATGTGGGTCTCCTGCGACTCTTCCCAGGAATCACTGCTGCTACTGTCAGGGCCTTCTTGCAGCCTCCTATGGATGGGATCGTACTGGAGACCTACGGCAGCGGTAACGCTCCTGATAACCGTGCTGACCTCCTAGATGAGATCCGTAAAGCCACCGAGAGAGGAGTCATCATAGTCAACTGCACCCAGTGCCTCAGGGGCTCGGTCACAACCTCATACGCCACCGGCCAGGCTCTCAGTGATGCCGGTTTGGTTGCTGGCTGTGATATGACCCCAGAAGCTGCTCTTTCAAAACTCTCCTATGTGCTGGCAAAACAAAACCTCAGTatagaagagaagaaaaagATGCTGAGCCGCAATCTGCGTGGTGAGATGATAGCGCACCTGGGCGGAGCAAAACTTTCTCTCAGTGACAGTCGCTTTATTCAGGTCATCGCTCGGTCCCTCAGCATTAGCTGTAAAGAGGAGCTTGAAGCCATACGAGATGCACTGACGCCCACTCTGGTCTGTGTTGCTGCTAAAATCGGAGACATTGAGGCTTTGGAGGCCATAAGGGAAATGGGTACTGACCTGAGCATGGCAGATTATGATGGCCGCACTCCCCTGCACATCTCGGCGTGTGAGGGCCATCTGAAAGTGGTGGAGTACCTGCTGAGTAAAGGGGCCACCGTCTATGCCAGGGATCGCTTTGGTGACACACCTCTTCGCAATGCTGTTCGCTTCAGGCATAAGGACGTTGTGAAACTGCTGAGGAAGACTGGAGCTCATTTTTCCTGGGAAGAAATGGAGGATGCTGGAACAGAGTTGTGCAGTCTTGCGGCAAGTGGCGACTTGGAAGGATTGGAGATTTGGCATTTAGCTGGGGTGGATATGACCATGTGCAGTTATGATGGACAGACGCCCATTGAAGTGGCAAGAGCCACTGGATGTGAGGAGGTTGTTGAGTTCTTAAAGCAGGCTACTATGTACCAAGCTCAGCATGAGACAGATGCTGACAGTAATGAGATGCACAATCAGTAAACGGTCCAAAACATCCATCGCTGTGATGACTTGTAATTAATGTGCTGATGAAATGTCTTTGTGGCATGATTGGTGTGTAAGAGAATCTGGCAAAAATCAACCGCTTGACGTTAACAAGAAACCTCTCGTCTTTTTTCTTGCAGCCAGTATTTGAGGAGGATGAGAATGTCGAGTATACGGAGTTTACAGCTTGTCCAAGATCCTGAGGAGGCCGTCCTACGAGCTGTCACTTCCTGCCGCTATTGTCCATCCAAGTTTCTTATTTTACTTGAACTAGCATCCTCTCAAAACCTAAAGAGCACAAACCAAACCTCAAAAACAGTAAGCAATCAGTTATGAATGTATCGTGACTATCATACATACTATTTATGTACAAGCAAATGATTCAGATGATGTCCAACATTATAATACGTCCCCGTTTGAATGTGATGTATTCATTGTTTAGATTTAGAATAAGTTCAGATATTTGAAGCGtccttcagtgtttttaatgcgTCCGATTCAATGTGGTCATAATGGTGATCctaaatgtgaatgtgtttttaaaaaaaaacgactaCAGTTGTAACCACAGTGAAGAGAAAGGATGGTTTTACAGGGTTgtagcaaacaaaaaaaaaaccgtcTCAGTATAATGGAATCTGAGGAGCAGGTGACTTCACCATCAGCCAATGAATTGATGTAAGTCTGTTTGGGCTTCAGACAATCCACACACCCAGAGAGTGTTCCTGTTATATCACAGCTAACATAATTATGTGTTTGTAATCCAAAAGTTTGCAGAACAccaatttttttcctgtgtttgtCTGTAATTCTGAGTTTCATAATGAAAAATTGAATTTTAGTTCACCTCAGAAAAGCTTTcaatttaatagattttttttaaatgtttttttttttttgatgttacaAAAGCATATGTTTATGCTTTGGCTGCATTTGACTGTCATGTCTGCACGGCCTTTTGACAATGAAAggcaaaaagtattttcttttgcaAAAGTGTACAATAAATTTCTACAAATGTC

Function

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0004067 asparaginase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181151 lncRNA downstream 91046 20658480 ~ 20666670 (-) True G122646
TU181132 lncRNA downstream 117304 20595306 ~ 20640412 (-) True G122628
TU181126 lncRNA downstream 228805 20525065 ~ 20528911 (-) True G122625
TU181128 lncRNA downstream 228805 20525065 ~ 20528911 (-) False G122625
TU181088 lncRNA downstream 590075 20167024 ~ 20167641 (-) True G122594
TU181315 lncRNA upstream 84893 20855122 ~ 20857658 (-) True G122754
TU181357 lncRNA upstream 88042 20858271 ~ 20861117 (-) True G122775
TU181366 lncRNA upstream 104543 20874772 ~ 20875152 (-) True G122783
TU181369 lncRNA upstream 109777 20880006 ~ 20880453 (-) True G122786
TU181371 lncRNA upstream 115959 20886188 ~ 20886913 (-) True G122788
XM_043262209.1 mRNA downstream 32373 20699061 ~ 20725343 (-) True LOC122361456
XM_043262295.1 mRNA downstream 69161 20680462 ~ 20688555 (-) False LOC122361508
XM_043262296.1 mRNA downstream 69161 20680462 ~ 20688555 (-) True LOC122361508
XM_043262286.1 mRNA downstream 98608 20650588 ~ 20659108 (-) True LOC122361502
XM_043263588.1 mRNA downstream 121557 20556723 ~ 20636159 (-) True LOC122362234
XM_043262391.1 mRNA upstream 17881 20788110 ~ 20798977 (-) True LOC122361586
XM_043263076.1 mRNA upstream 24792 20795021 ~ 20797384 (-) True LOC122361898
XM_043263075.1 mRNA upstream 29824 20800053 ~ 20801973 (-) True vcpkmt
XM_043263073.1 mRNA upstream 32928 20803157 ~ 20813946 (-) False si:ch211-202f3.4
XM_043263072.1 mRNA upstream 32928 20803157 ~ 20813946 (-) True si:ch211-202f3.4
TU181130 other downstream 123166 20633781 ~ 20634550 (-) False LOC122362234
XR_006253105.1 other downstream 488014 20269585 ~ 20269702 (-) True LOC122362405
XR_006253117.1 other downstream 496890 20260708 ~ 20260826 (-) True LOC122362424
XR_006253104.1 other downstream 498399 20259199 ~ 20259317 (-) True LOC122362404
XR_006253106.1 other downstream 499919 20257678 ~ 20257797 (-) True LOC122362406
TU181356 other upstream 145036 20915265 ~ 20916468 (-) False nenf
XR_006253084.1 other upstream 307832 21078061 ~ 21116545 (-) False tmem63c
XR_006253085.1 other upstream 311265 21081494 ~ 21116552 (-) False tmem63c
TU181813 other upstream 971289 21741518 ~ 21742973 (-) True G123095
TU181828 other upstream 973477 21743706 ~ 21747736 (-) False LOC122362121

Expression Profile