RNA id: TCONS_00009852


Basic Information

Item Value
RNA id TCONS_00009852
length 668
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_005056
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1014418 ~ 1034460 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACGTGTTTGAGTGACTGCAGCTCTACGATCGGCAACATGGCAGAAGAGACAGCAGATAAGCACACAAATAAGGCTTCAGTCTGACCTGCTGGAGGACTTCATCTCCAAGACACTGCTGTACATTGAGACGGGCTTCTTCTTCTGGGTTCAGCCGCGTAGTGTTGATGATTTAGCGGATCCGCCGAGGCCTCGTGGTTGTTTATGTCTGAAGAGCTGCTAACTCATACTAGCATGTCGCTTCGTTTGCTGACTGAAGCGCATTCTCTTcttcattgagGTTTGAATCCTCCATCAGCATCTTCTCCTCTTTCTCAAGTCTTCATTATGGCCAGTGGAGACGATGATGATCCCATCATACAGGAGATCGATGTTTACCTGGCCAGAAGTCTGGTGGAGAAGCTCTATTTATTCCAGTATCCCGTGCGTCCCGGATCTATGAGCTACAATAATGTGACTCATTTGGGGGCCAAAATCAAACCCAAGCAGCAGAAAGTTGAGCTGGAGGTTGCGATGGACACCATGAGTCCAAACTACAGCCGCAGTAAAGGAGAGCAGATTGCGCTGAACGTGGACGGCATGTCTTCCGAGGACTCCAACGTCTACACAACGAAAATGATGGACAAGCAAACGTTCTCATCGATCCAGGCGACCACGAACACGTCTCGC

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005666 RNA polymerase III complex cellular_component

KEGG:

id description
ko03020 RNA polymerase
ko04623 Cytosolic DNA-sensing pathway
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030131-8462 Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3E (RNA polymerase III subunit E).

Ensembl:

ensembl_id ENSDART00000152455

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009849 lncRNA downstream 28844 995830 ~ 999736 (-) True XLOC_005055
TCONS_00009826 lncRNA downstream 564591 461129 ~ 463989 (-) True XLOC_005045
TCONS_00011054 lncRNA downstream 619949 406187 ~ 408631 (-) True XLOC_005043
TCONS_00011053 lncRNA downstream 673025 337808 ~ 355555 (-) True XLOC_005042
TCONS_00011052 lncRNA downstream 673049 337808 ~ 355531 (-) False XLOC_005042
TCONS_00011055 lncRNA upstream 38102 1072485 ~ 1077114 (-) False XLOC_005057
TCONS_00011056 lncRNA upstream 418517 1452900 ~ 1453339 (-) True XLOC_005062
TCONS_00011057 lncRNA upstream 965636 2000019 ~ 2001490 (-) True XLOC_005067
TCONS_00011058 lncRNA upstream 966253 2000636 ~ 2001824 (-) True XLOC_005068
TCONS_00011059 lncRNA upstream 1033580 2067963 ~ 2073187 (-) False XLOC_005069
TCONS_00009848 mRNA downstream 28780 993432 ~ 999800 (-) False XLOC_005055
TCONS_00009846 mRNA downstream 28786 992442 ~ 999794 (-) False XLOC_005055
TCONS_00009847 mRNA downstream 28818 993103 ~ 999762 (-) False XLOC_005055
TCONS_00009845 mRNA downstream 38431 982796 ~ 990149 (-) True XLOC_005054
TCONS_00009844 mRNA downstream 48791 964760 ~ 979789 (-) True XLOC_005053
TCONS_00009853 mRNA upstream 38103 1072486 ~ 1085227 (-) True XLOC_005057
TCONS_00009854 mRNA upstream 303958 1338341 ~ 1345562 (-) True XLOC_005058
TCONS_00009855 mRNA upstream 315035 1349418 ~ 1361517 (-) True XLOC_005059
TCONS_00009856 mRNA upstream 334262 1368645 ~ 1370372 (-) True XLOC_005060
TCONS_00009857 mRNA upstream 369423 1403806 ~ 1406480 (-) False XLOC_005061
TCONS_00009831 other downstream 406291 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009859 other upstream 456089 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009912 other upstream 3251983 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 3261166 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 3263474 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 3263844 4298227 ~ 4301376 (-) True XLOC_005113

Expression Profile

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