RNA id: XM_043262791.1


Basic Information

Item Value
RNA id XM_043262791.1
length 4998
RNA type mRNA
GC content 0.48
exon number 7
gene id spred1
representative True

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 17036069 ~ 17054298 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaagtatttcaatgactttattatttattatgagtgatgtaactgattacatttgattcTCTTTTTTATAACTTTTCTAATTTTCTAGGATATTAAGAAAAGATGGCGTTTCATGGAGGTTTTTTGTAAACgttctaccataaatatatataacttattttttaataagtaatgCATTGTTAAACACTTCATTCAGACAACTTTAAGGCTGCTTTTCTCGATGTTtcgagtttgttttttttttatctcaatgTGAATTAATTTGGGACAGCTGTATTCCGGGGGACACGCGCAGCCGAAGTCGTTCCCGACGCGACGCGTCACTCAGTCACCGGACGCCGCGGATGAGGATGAAGGCCGGCTGGATGGAACGAGGGGCGGAGGGATCTCCGCTCGTGCGCTCAGGCCGTCCGCTCTTCCGCCCAGTTTTCCGACGTGATTCGCCTGCGGTGAAAATGGAGTTCGCGTAAAGCAGATCCCCAAACTTCCCAGGAAGAATTCCCATCGTTCGCCGCGCTCATTCCGTCCCGATCCTAGACTTTGGTTTCCTCCGCGCTGAGGACGCGTCCGGCGGCTCGGTCTTCGGTTCATCGCTGGATCCTGTCGCGTGAAGTCGTCGTGAGGGTTTTCAGCGCGCTCTTGCCGAGATTTCGGGGTTTTCTGGTCGGATCGGGATGAGGAAGGCGCCGATGGTTTCCCCGCTGGATGTGATTTATCGCTCGGATGGATGGAAGTGTCGCTTTCACCGCTTCCACACACCCTTCCCGTTCTGAATCCCGTGCCCGGGCTCGACTGCTTCTCGGGAACGATAACGGCCTTTCGTGCTGCTCTCGCCGAGAAAATGGAGATGTTTGCGCTTTATTTCCCCGCCGTGAGTGCGAGCTCCACCGTATTTCCAGGATTCGGATCCCCGTGAGAAAAAATGAGCGAAGAATCAAATCCAAACAGCGAGAAACTAATTTGGACAACtctaaagTGAGAGTTTTGCGCGTGTGAGAGCGGTGGTCATGACTCGAGATGACTCCAGCGGCGGATGGCTTCCTCTGGACTCCGGAGGACTCAGCTCCGTCAGCGTACACAAGCTCAGCCGGACCGAGGCCGACGGCTCCAGCGCTGCAGACTTCCTCATCCGCGGAGAGCGGCTCCGGGACAAAACGGTGCTGCTGGACTGTGTCATCAGGAGGGATCTGGTGTATAACAAGGTCAATCCCATCTTCCACCACTGGAGGATCGGCAGCATGAAGTTCGGCCTGACCTTCCAGAGCCCAGCGGACGCCCGGGCCTTCGACCGCGGGATCCGGAGAGCCATGGAGGACGTTAAACAAGGAGGAACACCTTACACCGACACCCCTGAAGAGCCTTCATCACAGGAGACTGTGTCTGTCAGTACTCCGGTGAGGGACGTCTTCTGTTCTCGGGGGGTTGTATTTACTGAACCCTTCCACGGCTCTTATGTTCGAGCTCAGCCCTTCGACGAGGCTCTTACTGCCAGCCAGCGGTTCCTGCCTCCACAGGTGTCCTCCAGCGGCAGGCGGCACGTGAGCTTTCACATGGACGAGGAAGAGATCGTCCGCATCAACCCGCGCAAAGATGTGCTCATCCGAGGCTACGAGGACTACCGGCACCCGGTGCTGTGGAAGCAGGACCCGGAGCGCGAGGAGCCGGACGCCTCCGCCGCCTTCTCCAAGCCGGACGCCAAGGAGCCGGTGAAGACCCAGCAGCCGTCGGGCCGGAGGCGACGTGAGGACGGAGAGCGCTCTCGCTGCATCTACTGCCGAGAGATGTTCAACCACGAGGACAACCAGCGGGGCCAGTGCCCTGACGCGCCCGACCCCATCAAACAGTGCATCTACCGGCTGAGCTGCATGCTGTGCGCCGAGAGCATGCTGTACCACTGCATGTCCGACTCGGAGGGGGACTTCTCGGACCCCTGCTCCTGCGACGCCAGCGAGGAGCAGTTCTGTGTGCGCTGGCTAGCACTGCTGGGGCTGTCTCTGCTAGCGCCCTGCATGTGCTGTTATCCTCCGCTGCGCGCCTGCCACCGCTGCGGAGAGGCCTGCCGGTGCTGCGGGGGGAAGCATAAGGCCGCGGGCTGAGCCGGGCCGGGCCGGCGCCGCTGCTTTCACTAGCCCGAGACGGGCGGAGCGTCGCTCTTGGAGCACGGGCGGAGGAGCTCCTGACGCCAGGAGGAGCGTCCGGAAACACGCCGGGGTTCGGCGACTGTAACTGTGTGAAGAAATAACAATACTATCGTGTCTTGTACAGAGCTCTAACACCGTGTCCTAACTACATGCCACGCGACAAGCAATGTAGCTTTCCACACCGGAGTCAATCAAacatcacagccaatcagaagtgtGTGTGGGCGGAGCCTCTCTTGAAGCTCGCTGCTCTCGCATCAAAGTGGATACGTTTGGAATATAATTCAGAgatcttttaacatttattaaaagcacgGACTGAGTTAAGGCTGTCAAACTGGCTGAAAAGATAAATGATCGTtttgtacataaatattatcaatattcaagttatatttgaatttaaaaggcATCCTTTCAGGTAGGAGGGAAAAACGATTTTGGCTTCTCTCCTGAGGCCACAAGAGGAAGCAGCGAGCAAAACACTACTAATACGCATTTCTTCAAagcattaaagcaaaaaaagtttataaatcgtatagaattaatttaattgcttaAACGATTAGAAGCAAAGCAGCATCGTGTATGTATGAGTCGTTTAATACAAAAGACCGAAAACCAATCACAAAGagcacttcatttaaaaacatgaaattgcATTCATCTTCTATGACCAGTGCAACAGTGATACATGTCCCTCTAGAAAATGTGATGAGTATGCATTTTGTGGGAACGGATGTTTGCTTTGACAAACAAGATCTTCTCCGCATCGATGTTCTGCTTTCAGCGCTGCATCCAGTGAGTTCGGTGTAAGCTAACAAAAGCATTAAAGTGCAGTGATTCTAACATCGTCAGCTGATAGAGCTCCCGAAGCACTCCTGAAAATTTTATACAGCtattgtgtgtgcatttttaatttaaattcaacaATTATTAGAACTttttttgacagccctaatacTAAGTAACTGATACCTTCTTTGGAAGTACACTTGTTTTGCGTTGTTTTTAAcgtatatttttgctttaatttattgtCACTATCTGTAGTTGCTATGGCTACGACCAGGGCAGAGGTTGTTAACTTAAATTTCTGCCATTTATGGAAAAAATCTTAGCAACGATGGCAAAATCCAAAAGCCGTCTGTTGCTTTGACTGCCATGTGTACTGAAAACAGAACCGATCGGATTTAAGAACTGATATTGGTTCAAAAAAATTTGAATCTAGTAAAATCGAACCCTAGCATATTTGTGATTAATGGCCTCCGCTGTCATGTAAAGAGACGCAGCCTCTGTTCATCTGTTCTCTtcgtaaatgaataaatgcacaatccTATATGCTCATAGGTTCAATATTAAACGttaaaatgtgaagaaaaaataCAAGCAACTCTAAGTGTTCTAATGAATATATGCCAGATTTAAATGACACCCAGTGTCTCTGAAAGGGTCCCACAAAGTGATATTCAGACTCTGAATGAAGCACATAATCCGTCCCTGAGATTCATTACTAGTTTATATGGAACTCAAACTAGCTAGCTAGGACAGAAACCGATGAACCCGGGAAAGATGCCTTTAGGGCGTGTCGCGTCGTGTGTGTTCAGGACACGGTGTAACGCGTACGCTGAAGGGATCCCGCTTTTTCGTGCAGTTATTAACCGTGGCCTTTTCTTTTTGACCTATCAGCGCTAGACGGAGGAAAGCACTGAGCTACAGACTCTTGGTTTTGCTCCTGCATCGTGTTCGGGCACTTATCACGATCTCACGAGCGCTTCGTCCGCCGCAGACTCCGACCCGCGGGCGGTTCCAGACCCCAGGGACGCTCGACACGGAGGACTGTACGAGTGTTCGttttacatgcatgtttatgttgATGCCGAATCTCGTTTTGACTGATGTTTTGTGCGAAGATGATCTGTCAGTGTTGTGGGAAAGGACTACGGTTTACTTTCTATGCAAGTGTTTCCACGAGACGCTCTCGGACCGACGGGGCGTGTCGTGGTTTGATTTCACAGCATCCTGTACATAGGTCACATCTTAATATTGTTTCACATTGAAAAGTAGTGGAGACGATGGAAAGGTTTTAATCGAGATCCTCTCTAGTTTTGTATCGCCGGACCGTGAAATAGTGCGCCGAACAAACGTTTATGAAGCTCGTCTTATGAAGCTGCTAGAAACAATCACTAACCGCGTCGCAAGATTTAATCGGATGACTGTTAATCGCGATCTAGTTCTCCAGTACGGTTTAACCCTCGCCTCGCTGTCGTGTTGCTCCTTCCGGTGAATCGCTCGAGGCGACTCGGTTCACCTCGCGGATTATGCAACGCTTTCGCGTGTAACGCTGCGTTCGTGTGACTACCAGTTTAATCACGTGctgctattgttttatttttatcatcgGTGTTCTTCTCTATTCGTGGAGGTATAACTCTGGAATGCTCCTCGTAGTGTCGCCTCTCTTCGCGGTGTGCGCGTGTTCTTGATTCTGCCGTAAAGCAGCGCTTGATGCGTCGTGAACTCGTTTAGTTTTTACGCCATCGGCTTCGTTCTCCTCCATCTGAAGAAGTGCCTCACATCAGCCGTAGACTCGCTCGTAACGCCCCGCTTCTAACGCTTTATATCTATGTATAGGTATTTCTATCATGGTttgaaaatactaaatatatgaTGTAATATTTATAGTTCAGTAACTCATGTCATAGATGTATTTTCTGTATACAGATGTAGCTTGTTACTTTCGTAAATATacaatgtaaatatgcatacagatgtttgtaactgtttttatgttaCATTGTACACTTATTACATCACTTAACATtaccatgaaaataaaatgagagtttaaatta

Function

GO:

id name namespace
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K04703 SPRED; sprouty-related, EVH1 domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179680 lncRNA downstream 142671 16817606 ~ 16893398 (-) True G121609
TU179726 lncRNA downstream 485885 16549255 ~ 16550184 (-) True G121644
TU179720 lncRNA downstream 552100 16482647 ~ 16483969 (-) True G121639
TU179528 lncRNA downstream 701630 16334043 ~ 16334439 (-) True G121509
TU179526 lncRNA downstream 749666 16286122 ~ 16286403 (-) True G121507
TU179814 lncRNA upstream 78220 17132518 ~ 17132726 (-) True G121715
TU179810 lncRNA upstream 82572 17136870 ~ 17149028 (-) True G121711
TU179816 lncRNA upstream 96214 17150512 ~ 17157229 (-) True G121717
TU179821 lncRNA upstream 113925 17168223 ~ 17210260 (-) True G121721
TU179834 lncRNA upstream 160757 17215055 ~ 17215278 (-) True G121734
XM_043262311.1 mRNA downstream 1667 17029621 ~ 17034402 (-) False fam98b
XM_043262310.1 mRNA downstream 1667 17029621 ~ 17034402 (-) True fam98b
XM_043262644.1 mRNA downstream 21589 17005300 ~ 17014480 (-) False atxn3
XM_043262643.1 mRNA downstream 21664 17005300 ~ 17014405 (-) True atxn3
XM_043262638.1 mRNA downstream 31411 17001561 ~ 17004658 (-) True serpina10b
XM_043262315.1 mRNA upstream 161751 17216049 ~ 17276543 (-) False cdin1
XM_043262314.1 mRNA upstream 161751 17216049 ~ 17276543 (-) False cdin1
XM_043262316.1 mRNA upstream 161751 17216049 ~ 17276540 (-) True cdin1
XM_043262328.1 mRNA upstream 411572 17465870 ~ 17505049 (-) True angel1
XM_043262329.1 mRNA upstream 412460 17466758 ~ 17505049 (-) False angel1
TU179448 other downstream 1295583 15738262 ~ 15740486 (-) True G121456
TU179430 other downstream 1346275 15688891 ~ 15689794 (-) True G121438
TU179418 other downstream 1349121 15685539 ~ 15686948 (-) False LOC122361708
TU179062 other downstream 1936145 15083818 ~ 15099924 (-) True crip2
XR_006253025.1 other downstream 2009654 15010826 ~ 15026415 (-) False ptgr2
TU180175 other upstream 907991 17962289 ~ 17963965 (-) False acyp1
TU180176 other upstream 907991 17962289 ~ 17963965 (-) False acyp1
TU180335 other upstream 1225167 18279465 ~ 18281572 (-) False LOC122361613
TU180588 other upstream 1576959 18631257 ~ 18644980 (-) False LOC122361943
TU180607 other upstream 1732584 18786882 ~ 18790880 (-) True G122247

Expression Profile