RNA id: XM_043262877.1


Basic Information

Item Value
RNA id XM_043262877.1
length 5643
RNA type mRNA
GC content 0.44
exon number 17
gene id slc24a4a
representative True

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 15858724 ~ 15890289 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCATGAGAGGAGATGAAACCTCAACTTGAGAGGACCGAGCCTGAACGGCGTGGATCCTAAAGACGTTCACTGACATTAAATACCTGGACATCAGCTCGCCCTGTGTAGCTTATGTGTGAAAGAGAACGTGGGTTTCACTTTTGCTATCACCGCGTACTGCACATCGTTCaaaatatatgattaatttCAGGTGAATATAATTAGCGGGTTTTTTTCCTCGCAAACAGGGCAAGCGGGCCGCTTTAATAGTACAACATCAGCACGAGCGAGTGGAGGAGGCACCTGGGACTgaagctttctttctttctctcacacacacacacacacacatacagaaagcgagagagagagagagaaagagagagagacgggatCGGCGCGCTGGACATGAGGAAGACCTCATCCCGAGCCTGATTTCCTGCGGTCCCGGCCATCTGTGTGGCTTCAATTGCACTGAAATCCACTCACAAAATGACCCAGCCACAGACGACCACGGAGCTGGAGCAGAGCTGCAGTTTATCTAAAAAGAGCATCATTACCAAAATGTTTAAAGTTCGCAAAAGGAGAGAGATGCTGTTCGTGCAGGTGTGCTTCATCTGCAGCGTCCTGTTCTTGGCGTGGTGTATGTCGGCGTTGCTCACAAAAACAGGTCATGGGCTAGTGCTTCAGGAGGGGTTCGCCGTTCCCAGAGATCACCTGGGCCGAAGGCTTATGGCCACAGCAGGAGAGAACGAGACGGAGAAGAACTGCACAGAACCAGCCGTCCACGAGTTCCCCAAGGATATATTCACCAACAGGCAACGTACTCAAGGAGCTGTACTTCTGCACATATTTGCGGCTCTATATATGTTTCTGGCCCTTGCTATTGTATGTGATGACTACTTTGTGATGTCTCTAGAGAAGATCTGTGAGAAACTGCACCTGAGTGAAGATGTAGCAGGAGCGACCTTCATGGCAGCTGGAAGCTCCGCCCCCGAGCTGTTTGCCTCTATAATTGGTGTGTTCATAACACATGGAGATGTGGGGGTGGGTACCATAGTGGGCTCAGCCGTGTTCAACATCCTGTGCATCATCGGAGTGTGTGGGATATTTGCGGGGCAGGTTGTTTTTCTCACCAAGTTTGCCGTGTTCAGAGACTCAATCTACTACATTTTTTCTGTGGTTGCCCTTATTATAtttatttatgaTGAAAAGATTTTGTGGTGGGAGAGTCTGATACTGATTGTAATGTATTTAGGCTACATTATCATCATGAAgtTTAACACTAGCATGCAGAACTACTTTTCGGGGAAAGAAGACAAGAGTGTGCCCAATGGTAATACGGTCATCAGCGAGATGGAGGATGGTAATACATGTTATGATCAGTATTGGGATGATCCATCATGGCCGTTACTTAGACCAGTAAAGCCCTGTAAAGAGTACACTAGGGGCTCTGTTGTGATGGTGGACGAGATGATAAATTCAAGCCCTCCACATTATCGGTTCCCCGAGGCCGGCCTCAGGGTCATGATCACCAACCACTTTGGGCCCAAGACACGTCTGCGCATGGCAAGCCGACTTATCATCAATGAGCAGCAGCGGCTGGTGAAGATGGCCAATGGGGTGGATGCAGTGCTGGTGGCTGATAAGAAAGCTGACACCATGGAAAATGGCAACGTAGCGGAGGACAAACTCACTGAGGAACAAGAGAGTGAGCTGTCATCTCCCTTCGTCTTGCCTGGGGGCGCTATGAATAAAGTGAAGTTTTTCGTTTCCTGGCCCATTTTGTTGCTGCTGTTCTTCACCATACCCAACTGTGCCAAACCACGGTGGGAGCGCTTCTTCATGCTGTCCTTCTTCCTCTCTACGCTGTGGATAGCCATCTTCTCCTACGTCATGGTGTGGATGGTCACAATCGCTGGATACACGCTTGGAATCCCAGATGTCATTATGGGTATAACTTTCCTGGCTGCTGGCACCAGTGTTCCCGACTGCATAGCCAGTCTCATCGTCGCACGACAAGGCCTGGGGGACATGGCTGTCTCCAACACGATTGGCAGTAACGTCTTTGATATCCTGGTTGGACTCGGCGTTCCCTGGGGCATCCAGACAATGGCTGTCAACTACGGCTCTGTGgTTAAAATCAACAGTAGAGGATTGGTTTACTCCGTTGTTCTGCTGCTGGGTTCGGTGGCTTTAACTGTGCTGGGGATCCATGTGAACAAGTGGAGGTTGGACTTTAAGCTGGGCATATACGTGCTTGTTCTGTATGCCATCTTCCTCTGCTTTTCCATCTTGATCGAATACAATGTCTTCACTTTTGTCAACCTGCCCATGTGCCTAGGTGTCTAGGCTAGGTGATTTCCATGGGCTTTGAACCAAAATACCTCCGGGATAAACCTGCAACCAAAATCACCAATGATTCTgctgtttcctctctctctttaaactCCCTACTGTTGAAGAAAACCACTGTCTCCCGCTGCACATTCACACCACTGTGGCTCAGATGGAAGAACTGCATTTCCCGGAAGACCGTTGACTCGCAACTTTCTCCATCAATTCCAGGAAATTAAATTCTCCTTGGCAGCTCTCTTTATAACTGGATATTCTTCTACTTCTGAACCTTGGACAATCACAATGCAGCCCGTAAACGTCTTGTTCAGAGCAGAAGGATTCAAAGCGTACACTCGCACCacaaactgcacacacacacacacacacacacacacggcaatGACAAAGAATGCTGCTCATTCCAGTATGCATTAGCAATCTACATTTTCTAATTTCTGTCTTCCCTTGACACAACGTATGACATGAACATGAACATAATGCACTTTATACGTGGCATAAAACATCTATATcgtattaatttatttcctcCAGAATGGAAAAATGAAAGCACGTCCTTGATGTGGCGCAATAAAAAGATGGAAGTGACATGAAATGACTGCCCTCGGGCAAGAAAGTGGTTCTCGCAGCTCGTTACACACAAGAAAACTGTTGAAATAAGACACACAGCAGATGTGAAGCATTTCATGTATGGATCGTGCGGCAGGGGGCGAGCTGTTACGAAATGCTTACGAGCCGGACCATATATTTCCTGCTGAGAGCTTCCAGCAGGTGCCAATCGGAGAGGTCAGCGAGTGGACCAGCTTCTAACGCATGGAAGCAGGAGCTCTAAAATCGGATACGTTCTTGGTTTCCCCTTAATTATTCCAGATCTGCATTAACTAATGAATGGAACCAATCATAAAGCACACATCAAAAGCTGCTCCTCACCTCTCGTTCAGACCAGAGCAGATGACCCTCAGGACCGCTCTTTGCTTGTGTCGCAGTTTGGATGATGACTGACAACTGTGGCTGCTTTGATATTTCAAACGCATCACAAACCAGAGATCCTGGATTTTGCAAACATGCTACAAAtcgaataatttttttgtttgttagtttgtgtatatgtaaatataacatcACTGATCCTGTTTGAACCAGTGCTTCCTTACAGATGATGGGAGGTAAGGGTGAATTTACATACGTGACCGAAGAGGCCACCTTTTCTTTATTTCCAATGCACCCTAACCTCCCTCTCTGAATATTTATTACCATTTGTCTGTAATGCATGATTTGACACAAAGAAGCCATTTTTGAAGCAGGGCAGAAGCTTTGTGAGCTCACGTTCCTGCAAGGATGAATCTCAAGAAAATGTGCCCAGGTCATATTTCatcccaaaatcaaaagaaaaaaacaatagattGTGCAAAGAAATTAAGTTTAAAGACCTTTTTAAGGTTTATCTGcattgacatgttttttttctcataaattATCAACCCTCGTTGCTGTAATGTATGCAGACTTCATACTGCAATTCGtgcatacaaatatttaaattagcataAAGCAACCATAATATTTAATTAccttaattatatatttcttgcATAATAGGATAAAAGGATTGAGATTTTTTGTATGCAGCCATGGAAATATGAttaattttgtatgatttatttagaaGTAATTAAAATTACTATAATGAAAACTGAGGTAtactttgaattttttttttttttttggtgttagggtaatggtttttttttcctttttcttttctctgttgcGGTAATGATGTTTGAGGTGCAAAATGTGCTTACCGTAACGTCGCAATACAAAGACGAAGTATAATAGCCCTCATAGACTTATTTTTCTTTAAGCATAAAACGATCAGCTAATttcttcttgttgttttttttttttttttttttgtggtgaaaCATGACCTAAACTTGACCTCGACAGGTTTTCTGAGATTCACCCCTACCCGGCAGCTACAGGACCCCCGTCCACTCAGCTGCCAGTGGGCCGAAAAGATCCGAACGAGCGTGTCTTTGTGTCTTTTTGTCAGTTGTAGAACCTGTCATCGTCAAGTGCTAGGAGGTGCTGTCGCTGTTGTCCGTGCAAAAAAGACAGGTGTTGCGGTATTTGATGTACacattatatatgatatatgcaATCTCAGTCGGTGAGGGCCGAGGACGGAGATCTTATTTTCATAGATGAGCCATGTTTGTGAAAGCTGCTGAAGTCGCCCGCCGCTGTAACACATGCATGCAGATTCTGTCATCTAAATCTTACATCACACGATTGCCATTCTGTAGAGCGTCGACTTCGGTTTATTGTGGCTATGTGCTGTGCGGAATGACGGTGGTGTCAAGTGACGAttctctttcgttctttcttgCGTTCTTTGTTCTGTGGTGTTACTCAGTGGTGATCTGTACGATTACGTTATTCAGCTGAAATAGATAAACCATACGCACACTGTCGGAGGAGCTTGTGAAGCTTCTTCCTATGCTGGCTGCCACGTTAAATAGtgtcgttttttttcccccagcatTTAATGAGGTCTTGGTGCCAGTTTCTATTCTTTGTTAGTTTCTCCCTGGTTGTTTTGGGAAATCTCTTTTTGCCGGTGCAATAGACGGTGCATTCATATACTAGGtttcttttgaatttatttgtcaGCACACTATCCTTTACTTTGTCACAGGTTGTTTGTGCCATGCTCGATGTAAATGCTACCGTTATATTTGAACTGAGATAagtatttttttgacatttaattgcattttataaactTCAGACCTCCGGAGTGGTTTGATTAACGTTTCATCGGGTCACTTCGGAGGGGGGCGTCTTTGTTGCCAGTCGTATAGCACTCTTACATGAATAGACTTATGCACTCTCCATTGTATGCCTGTTTCAGAGGGCAAAAACTTAAAGGAAAATGCTTCAAATGACTCTGCCACGCATGAATATGCACAAGAGTATGAGAACTTCTTCTCATGCGGTGTCTTGAtttactaaaaacacacacacacgcacgcacagatACATGCGCAACTGCTCCACGAGTGACCTGCTGCACTGTGAGTGGAACGGCATATAGGAAGCCTTTTGTAAGGTACAGATTTAACGATTTTCAACATAAGATGTTGGTGTGTAACTTGAATGTATTGTCTTGCAAGCAATGGATGTATCCAACcaatgcattttactgtaaagcaaTAATCTAAAAAGAATACGAACAACAGTATATGAAGCATACGAGTATTGTATGGAGAAAACGATTAAATTATACggtttataaatgtg

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13752 SLC24A4, NCKX4; solute carrier family 24 (sodium/potassium/calcium exchanger), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179457 lncRNA downstream 96239 15760532 ~ 15762485 (-) False LOC122362003
TU179442 lncRNA downstream 138401 15713410 ~ 15720323 (-) True G121450
TU179416 lncRNA downstream 173358 15683661 ~ 15685366 (-) False LOC122361708
TU179414 lncRNA downstream 180515 15601266 ~ 15678209 (-) True G121427
TU179246 lncRNA downstream 340642 15516936 ~ 15518082 (-) True G121343
TU179526 lncRNA upstream 395856 16286122 ~ 16286403 (-) True G121507
TU179528 lncRNA upstream 443777 16334043 ~ 16334439 (-) True G121509
TU179720 lncRNA upstream 592381 16482647 ~ 16483969 (-) True G121639
TU179726 lncRNA upstream 658989 16549255 ~ 16550184 (-) True G121644
TU179680 lncRNA upstream 927340 16817606 ~ 16893398 (-) True G121609
XM_043262882.1 mRNA downstream 40 15849465 ~ 15858684 (-) True LOC122361840
XM_043262883.1 mRNA downstream 1492 15849465 ~ 15857232 (-) False LOC122361840
XM_043262880.1 mRNA downstream 1492 15849465 ~ 15857232 (-) False LOC122361840
XM_043263240.1 mRNA downstream 91709 15760343 ~ 15767015 (-) True LOC122362003
XM_043262625.1 mRNA downstream 170284 15683662 ~ 15688440 (-) True LOC122361708
XM_043263241.1 mRNA upstream 11435 15901701 ~ 15951438 (-) True LOC122362005
XM_043263313.1 mRNA upstream 62316 15952582 ~ 16000711 (-) True LOC122362058
XM_043263248.1 mRNA upstream 227856 16118122 ~ 16207614 (-) True LOC122362009
XM_043262547.1 mRNA upstream 547964 16438230 ~ 16440346 (-) True gpr132a
XM_043263475.1 mRNA upstream 576367 16466633 ~ 16469479 (-) True prph2la
TU179448 other downstream 118238 15738262 ~ 15740486 (-) True G121456
TU179430 other downstream 168930 15688891 ~ 15689794 (-) True G121438
TU179418 other downstream 171776 15685539 ~ 15686948 (-) False LOC122361708
TU179062 other downstream 758800 15083818 ~ 15099924 (-) True crip2
XR_006253025.1 other downstream 832309 15010826 ~ 15026415 (-) False ptgr2
TU180175 other upstream 2072023 17962289 ~ 17963965 (-) False acyp1
TU180176 other upstream 2072023 17962289 ~ 17963965 (-) False acyp1
TU180335 other upstream 2389199 18279465 ~ 18281572 (-) False LOC122361613
TU180588 other upstream 2740991 18631257 ~ 18644980 (-) False LOC122361943
TU180607 other upstream 2896616 18786882 ~ 18790880 (-) True G122247

Expression Profile