RNA id: XM_043262880.1


Basic Information

Item Value
RNA id XM_043262880.1
length 2104
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC122361840
representative False

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 15849465 ~ 15858684 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGTAAAGCACGAGATTTAGCATGTGGCAGTCAGAGAGTCTATCTCCCAGCGCTCTGCGGAGCATTATTCGTCTGCAGAGTCGGGATATTAAGAACACTTCTGGTATCGCTGCAGGATATCAGCAGGCTAACGTGGTGATCTTGCACAAAGATCTCGCCGATGACTTTGAGGAGTTTTGCCGAGCTAACAGCAGCCCCCTTCCCCTGCTGTACAGGACCAAATGTGGAGAATGGAGCTGTGGCCCCCTCGCCACAGGAACTGACATCAGGGAGGACTGTCCAGAGTACTGCGTGTTTGAAAACGGCATTCTGATGAAGAAGGTCTCTAGTTTATCCTCTTACACTCCTCAACTCCAGGACATGGTTACGTTCTACCTCGGCTGTAGTTTTGGTTTTGAGTCAGCCTTGAAGGCCGCCGGGGTTCCAGTGAGAAATGTGGAACAGGGTAAAAATGTCAGCATGTACAAGacCTCAGTAGCTTGTATTAGAGCGGGTCAGTTTAACTGTCCGATGGTGGTGACTATGAGACCAGTACCAGAAGACAAGCTGGATGCTGCGGCTCAAAGCACACACGTGATCCCACTGGCACACGGAGCCCCTGTCCATATCGGAGACCCTAAGCTGCTGGGTATCCAGGACTTGTCCCAACCAGACTATGGGGACCCAGTGAAGCAGTGTACCGGTGACGTGCCTGTGTTCTGGGCCTGTGGGATCACCGGTGTTGAAGCTGTACAGAGCTGCAAGCCCTCTCTGGCATTCACGCACTCTCCTGGCTGCATGTTCATCACAGATCAAAAGGCGGAAACCATTTCGCCCCGAACTCTTGAGCCAGCGCAATGCCCTTTGAGTTTCTGCATTTCCCAGAATCCTCAGCATTACAGTATTGCTAGCAAAAGAGCTGTTCAACAAATTCGAGCCATTGAGGAGCTTGTTGTTGAAGACCCAGGTTCGAGAGGTATCCGGGCCCTGTTCTTGCAGGATGAGCTCCTGAAGGCcagtctctctctgtcccaTTCCTCCTCTGTCCTCATCACCACTGGTTTTCCCACACACTACATGCACAACCCCCCTGAAGAGACTGATGGCCCGCCCGGGGCCATCGCCATGGCAGCCATGCTTCAAGCGCTCCGCAAAGAGGTGGTCATCGTGACGGATGAGCGTGCTTTGGAGATGAATCAGCACATCGTGCGGGATGCTGTGAAGAAAGGTGTGATAAAGACCGCTGTGCCAGTAATAAGTTTCCAGAGTAATGGCCCTGACTCAGCACTTCACTTCCTGTGCCGTGATGGAGATCCCACTAAGCCCAGGTTTGACCACTTGGTGGCAATAGAACGCAGCGGCCGGGCTACCGACGGGAACTACTACAACATGAGGGGGGTGAACATCAAGCATTTAGTCGACCCAATAGATGACCTCTTTACCACTGCCGGCAATATCGCTGGTATCACTACTACAGggatCGGAGATGGAGGTAATGAGCTTGGTATGGGCAAAGTCAAAGCAGCAGTTAAAGCATACATGCCTAATGGAAATCTGATTGCGTGTGACGTGTCTGCTGATTTTGCCATTACAGCAGGAGTGTCTAACTGGGGTGGCTATGCTGTCGCCTGTGCTCTGTATGTTCTCAATCTCTGCCCGATACACTGGCGCTACCTCCACCGTGGTTTGGGTCCGTCACTGACCCCTGATCAACTGAGCCTGTGGACAGCCTGCCTGCCGACTGTAGCCAAGgaggaAGAGATGCTCCACATTTTGGTGAAATATGGCGTCCGCAGCGGTAAAACGGCAAACCTGGGACTGGAGGTGGATGGATTGACCTTTCATCCCTACCATTCTGACATCATACAGCGGCTTAGGAATCTGACGTTATAGTGACCTACGTCACGACACATCACACAGCCACAGGAACCAAGATGCACATCGGTGACTTGTTCCAGAGCCGACTCAGGCTTCTTTGTATATCCTCCCAgagaaatatgaatatgtgaATGTATAGAAAGAGCTGCCATTGTAACATTTTGTTGATTCTTAACAATCTGCTGCTCACTTTTTAGCCTATTTCTTGCTGTATGCAGTgtttgaatgaataaacagtTAATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179457 lncRNA downstream 86980 15760532 ~ 15762485 (-) False LOC122362003
TU179442 lncRNA downstream 129142 15713410 ~ 15720323 (-) True G121450
TU179416 lncRNA downstream 164099 15683661 ~ 15685366 (-) False LOC122361708
TU179414 lncRNA downstream 171256 15601266 ~ 15678209 (-) True G121427
TU179246 lncRNA downstream 331383 15516936 ~ 15518082 (-) True G121343
TU179526 lncRNA upstream 428890 16286122 ~ 16286403 (-) True G121507
TU179528 lncRNA upstream 476811 16334043 ~ 16334439 (-) True G121509
TU179720 lncRNA upstream 625415 16482647 ~ 16483969 (-) True G121639
TU179726 lncRNA upstream 692023 16549255 ~ 16550184 (-) True G121644
TU179680 lncRNA upstream 960374 16817606 ~ 16893398 (-) True G121609
XM_043263240.1 mRNA downstream 82450 15760343 ~ 15767015 (-) True LOC122362003
XM_043262625.1 mRNA downstream 161025 15683662 ~ 15688440 (-) True LOC122361708
XM_043262250.1 mRNA downstream 343534 15483111 ~ 15505931 (-) True rps6ka5
XM_043262251.1 mRNA downstream 346778 15483111 ~ 15502687 (-) False rps6ka5
XM_043262168.1 mRNA downstream 442962 15398795 ~ 15406503 (-) True pax9
XM_043262878.1 mRNA upstream 1492 15858724 ~ 15890289 (-) False slc24a4a
XM_043262876.1 mRNA upstream 1492 15858724 ~ 15890289 (-) False slc24a4a
XM_043262879.1 mRNA upstream 1492 15858724 ~ 15890288 (-) False slc24a4a
XM_043262877.1 mRNA upstream 1492 15858724 ~ 15890266 (-) True slc24a4a
XM_043263241.1 mRNA upstream 44469 15901701 ~ 15951438 (-) True LOC122362005
TU179448 other downstream 108979 15738262 ~ 15740486 (-) True G121456
TU179430 other downstream 159671 15688891 ~ 15689794 (-) True G121438
TU179418 other downstream 162517 15685539 ~ 15686948 (-) False LOC122361708
TU179062 other downstream 749541 15083818 ~ 15099924 (-) True crip2
XR_006253025.1 other downstream 823050 15010826 ~ 15026415 (-) False ptgr2
TU180175 other upstream 2105057 17962289 ~ 17963965 (-) False acyp1
TU180176 other upstream 2105057 17962289 ~ 17963965 (-) False acyp1
TU180335 other upstream 2422233 18279465 ~ 18281572 (-) False LOC122361613
TU180588 other upstream 2774025 18631257 ~ 18644980 (-) False LOC122361943
TU180607 other upstream 2929650 18786882 ~ 18790880 (-) True G122247

Expression Profile