RNA id: TCONS_00011055


Basic Information

Item Value
RNA id TCONS_00011055
length 4148
lncRNA type sense_over
GC content 0.36
exon number 2
gene id XLOC_005057
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1072485 ~ 1085227 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacatgctcctctcgaaattagtttaaaactaaacttcacttaaacttaactcaactaatcgctttaaaagcattcggtttactcacttttttaagttaactcaactaatcgctttaaaagcattcggtttactcacattttttaaaagtaagtcaactaattgctttaaaaacaacaggtttaatCACCATCtttaaaatcaactaatcgctttaaaagcattgggttaactcacatttttaaagtaaaatcaactaatcgcttGGATTTACTCAACTTTTTAAAGTAGACTCAAATAATCGCttcaaaagcaacaggtttacccaCTTTCTTCAacataaagtcaactaatcgctttaaaaacattggatttactcactttttaaattaaactcaactaatcgctttaaaagcagcaggtttatcCACTTCATTAAGTAAAGTcagctaatcactttaaaagcgtTGGGTTTACACAGATTTTTTAAGCagactcaactaatcgctttaaaagcgtTGGGTTTACACAGATTTTTTAAtcaactaatcactttaagaAATGGGTTTGCTGACTTTTGatgcaaagtcaactaatcgctttttacagtgtatgcattcTGTACTTTTTATCGTGACATTTCATTCCTTTTTTTCTGGTAATTGCGACCTTTAGATTTCCTGATAATATAAGGTTTATTTGTTGAAATGAACAAACACTGTGTTTAGTAAAACATGTTGAACAACAATTGTTGTTAGACACACCTTTGGATATTAAACTGCCATTGCATAAATGTTGAACAAATGATGTAGGAGTGTTGTTCGACCCTAGAAGTCTGATATGCAgtatggcaatatatgcaaatacatttcaaaatgtgCAAACCTCACTAGTTAGAATTACGAACATGTATATGTTCACATGTAATAGCGATAATCTGATCTACATGTTCATATGGCATCAGATTTTTCTACGGGAGTGTTAGTTCATTTTAACTCACTGATttaaaccttactgtaaagtcgTACTGATTTACTTCAAGTTTGATATCGAATGTTTTTTCTTTATACTATTGTTTGcataaaagtgtgtgtttttcgtttggttttgtttggttttcaGAGTGAGAATAGACCAATTTCTGTTGTCAGCTATTTAAATGCAATCATGGATTTGTCTTGCTACATGCAATTAAACCGTAGAATGAATGAACACGCAGTAACGCCTGACGTCTTTAATGCTAGTCAAGCTACTATTTGAGTTGCATCTACAGTAACTATTGAAGTAACGCAGGCCTAAAAACGGCGAGGGAGAGCAGAGGAGAGAGTGAAGTGATTCTGAATGACAGCAGCTCAAAGGCCTCTTTGTTTTCATTATAAAAGAGGCATTAATTAAGGGAGGGAACCAAACAAATACAAAGCAGAAAATCATTACCACTGCCGTTACATGAAAGCGGAGCAGAAGAACAGACGCTTCCCTCTGCTGTTTGGATAAACAGCAACAAAAGCGGCAGAACATGCATAAATTGAGTGCAGGACGAGCGAATAAGTTCTTCATGCTGTGGAAATGAGCCAGAGTCTCCAGAGCAGATGGCTGTGGGTGGACCGCCGCTTCTTTTGCTTTCACTACGTTTCTATTGCAttgatagtttgaagaatgtaaTTGGCGTTGACATGTACGGCACGCATCACTGTGCTCGCTGACATTATTGGGTCCTAAAACTGGACAGCGTACAGGAAAATGTAGAGTCTGGTAAGATTTTGATTTATAACACCATTGTGGTGTTTATTGTTGAGCAGTTGTTGCAGCGTGCTCGACTGTTATGTTGACATTTAGATTGTGATTTCAGGGCAAGAGCCGATGCACAATGGCACAAAGATCCCTCATACAGTCAATTATACTAAAtatgtcaccatagcaactgtagaatcacaacagatcgagtactgtagttgttgtgttaccatagcaactgtagaatcgccacaacagatcaattactaaagttggtgttaccatagcaactgtagaattgccacaacagatcaaGTACTATTGttggtgtgttaccatagcaactgtaaaatcggCACAACAGATCAAGTACTGTAgttgctgttaccatagcaactgtagaaatgTCACAACAGATTAACTCAagtactttagttgttgtgttaccatagcaactagaatcgccacaacagatcaagtACTATAGttggtgttaccatagcaactgtggaatcaccacaacagatcaattactatagttgttgtgttaccatagcaactgtggaatcaccacaacagatcaattactatagttgttgtgttaccatagcaactgtggaatcaccacaacagatcaattactatagttgttgttgtgttaccatagcaactgtggaatcaccacaacagatcaattactatagttgttgtgttaccatagcaactgtggaatcaccacaacagatcaattactatagttgttgtgttaccatagcaactgtagaattgtcACAACAGATCAAGAACTATAGTTGGTGTTATCATAGCAactagaatcgccacaacagatcacgTACTATAGttggtgttaccatagcaactgtggaatcaccacaacagaacaattactatagttgttgtgttaccataacaactgtaGAATTGTCACAACAGATCAAGTACTATAGTtaatgttaccatagcaactctagaatcaccacaacaggtcaagtactttagttgttgtgttaccatggcaactgtggaatcaccacaacagatcaagtactgtagttgttgtgttaccatagcaactgtagaatcacaacaacagatcgagcactatagtggttgtgttaccatagcgactgtagaatcagaAACACAGCGAGGTGGATTTTACACATGCTTTTCGAAAGCAGTAATGAATCTGAGTGTACAttgagtgcactgtaaaaaaaatatgcataagttaacagtttctgtattttgtgattcatgcttttatttttttcccgcttttttctgtttctgaattgcattatgggatcttgatctttctacCAAAGacgtttaaccttgaaaagttgtaaaaagtgaacatttgtaatagtgtgcagtgctgtattgtctggATTGGTGTTGTTAATTACGCTACaataaccttgtaataaactgcagcacattttctgttattttacacacttatttctctagatattatatttcttatacattatttcaaatgactaaaatgtcagtaaaagtcactttgttaaactgatgATTTTTCAACAtgaaaagtcgacagagcagagatcagcatcccataatgcaattccccaccgtaaataaacggaaaatacaaaatattgttcaTTAGCAGAtacattttacagtgtgtgaCAGTCATGAGTCTTCACCTTGTTAAAGGAATATAGTAAAGTGGATGACTAGTCCTCCAGTAACTCCACCTTCATTTAATAATTTCCTCCAGCTTCACCCGCTCTGCCAATGACAACAACAGCCAGACAGAACCAACATTTACTTACCCACAATTCCACAGTCCAGTGGAGCCAGGCTGATGATGGCGATGCAGAAAAAAAGAGGAACGCATCAGGGTTGGCACTAGTACTCCACAAACCCTTTtgacagttcaagtcagaattattcgccctcctgtgaattattttccaaatatttcccaaataatgttgaacagattcaggagttgttcacagtatttcctctaatatttgttcttctggaaaaagtcttatttgttttatttgggctagaataaaagcagttcttaattgttttaaagccatgttaagctcaatattattggccccttcagcaatattagtgttggattgtctccagaacaaaccactgttatacaatgacttgcctaattaccctaactttaccctaattaccctagtgaagcctttacatgtcactttaagctgaacactagtgtcttgacaaatatccagtctaatattatttactgtcatcaaggcagagataaaattaatcagttattagaaatgagtttttaaaactgttatgattataaatgtgctgaaaactaAATCTCCTCTCTGTTAATAAAGAGAAAGTCATGCA

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0032940 secretion by cell biological_process
GO:0046903 secretion biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:1903530 regulation of secretion by cell biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0051046 regulation of secretion biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051648 vesicle localization biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0017075 syntaxin-1 binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009849 lncRNA downstream 72749 995830 ~ 999736 (-) True XLOC_005055
TCONS_00009826 lncRNA downstream 608496 461129 ~ 463989 (-) True XLOC_005045
TCONS_00011054 lncRNA downstream 663854 406187 ~ 408631 (-) True XLOC_005043
TCONS_00011053 lncRNA downstream 716930 337808 ~ 355555 (-) True XLOC_005042
TCONS_00011052 lncRNA downstream 716954 337808 ~ 355531 (-) False XLOC_005042
TCONS_00011056 lncRNA upstream 375786 1452900 ~ 1453339 (-) True XLOC_005062
TCONS_00011057 lncRNA upstream 922905 2000019 ~ 2001490 (-) True XLOC_005067
TCONS_00011058 lncRNA upstream 923522 2000636 ~ 2001824 (-) True XLOC_005068
TCONS_00011059 lncRNA upstream 990849 2067963 ~ 2073187 (-) False XLOC_005069
TCONS_00010789 lncRNA upstream 990998 2068112 ~ 2073187 (-) False XLOC_005069
TCONS_00009850 mRNA downstream 38025 1014418 ~ 1034460 (-) False XLOC_005056
TCONS_00009852 mRNA downstream 38102 1028580 ~ 1034383 (-) True XLOC_005056
TCONS_00009851 mRNA downstream 40515 1015283 ~ 1031970 (-) False XLOC_005056
TCONS_00009848 mRNA downstream 72685 993432 ~ 999800 (-) False XLOC_005055
TCONS_00009846 mRNA downstream 72691 992442 ~ 999794 (-) False XLOC_005055
TCONS_00009854 mRNA upstream 261227 1338341 ~ 1345562 (-) True XLOC_005058
TCONS_00009855 mRNA upstream 272304 1349418 ~ 1361517 (-) True XLOC_005059
TCONS_00009856 mRNA upstream 291531 1368645 ~ 1370372 (-) True XLOC_005060
TCONS_00009857 mRNA upstream 326692 1403806 ~ 1406480 (-) False XLOC_005061
TCONS_00009858 mRNA upstream 326861 1403975 ~ 1405228 (-) True XLOC_005061
TCONS_00009831 other downstream 450196 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009859 other upstream 413358 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009912 other upstream 3209252 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 3218435 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 3220743 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 3221113 4298227 ~ 4301376 (-) True XLOC_005113

Expression Profile

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