RNA id: XM_043262934.1


Basic Information

Item Value
RNA id XM_043262934.1
length 4441
RNA type mRNA
GC content 0.46
exon number 19
gene id adam17a
representative False

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 14160519 ~ 14171694 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAGTAGATTCGGCGGAATTCCTCCTCAGATTGTTATCGCAGCAGAATCCGGCGCGACGAGGAGGAACCAGTGCGATAGTGTTCGCGgtgtattgtatttattcacattcaGCATTCAACGggatcatattttatttttatatttaaattcatcCGCTGTCGTCGTGTTCAATAAGCGAACGAAAGGGGAAGGTAAATAACGGACGGTAGATGTTGACAGCCACGGACTTCACATTCAGACATGGTTCTTTGACAGAAGTGATGCTTCATCGCCAGTATGGAGTCTTTGATATTTTATCTAGTGCTGTTAACTCCCCTTTCTATCCGTTGTGCGGTGAAACCAGCATCTGTTGAAGAAGACCCGAGAAATCAGGAAGAGGTGCAAGAGTTTGATGCTCTCAGCTCCATGCTGTCGGACTTTGATGTTGTGCCTGCATCAGATCTGCAGCTTCACTCGGTCAGGAAGAGGGACACGGATGCCCGATCGCATGTGGAGCGCTTGGTCAGCTTCACAGCCCTCCAGAGGCACTTCAAACTGTACTTGACAACCAACACAGACCTTTTCGCTGACAACTTCAAAGCTGTATTCCTAGACGAGAATGGAAAAGAGGACCAATTTGACATTCAGCTACAAAATTACTACAAAGGACACGTAGTAGGAGAGGAGCACTCGCGTGTGCAGGCACACATAGACGGGAAGGAGTTTTCAGCCCACATTCTTACTGAAGATGCTGAATATAATGTAGAGCCCTTGTGGCGGTTTACAGAGTCACCTTCTGATGGCCGTTTGCTGGTGTACCGTTCAGAGGACATTAAAAACATCAGTCGACTGTCCTCACCCAAAGTGTGTGGATATGTGAACACTGACGCTCAGGAGCTCCTGCCAGAAGAGGCGAGAGCAACGGGACAGAAGGCACAGGAGGATGAGCCTCACAACATACAGAGAAGATCTGCGCAGGACAAGAAGAACACCTGCCCGCTGCTGCTAGTGGCAGATCATCGCTTCTACAAGCACATGGGCCGTGGAGAGGAGAGCACCACCCTCAACTACTTGATTGAGCTGATAGACAGAGTGGATGATATATACAGAAACACAACCTGGGATGAGGATTTTAAAGGCTTCGGGGTGCAGATTCAGCAGATAATCATAAACAAGGAGCCCACAAAAGTTGCCCATGGAGACATTCATTACAACATGGATGGCAGCCCATTAGGAAGAAAGGACGGTGTGTGGGATGTGAAGAAGCTTCTAGAACAATTCAGTTATGACATCTCAGACAACGCCTCTACAGTTTGCCTCGCCCACCTCTTCACCTATCAGGACTTTGATGATGGCACTCTGGGTCTGGCTTACGTGGCTCCTTCCAAACAGGGATTGGGAGGACTCTGCCCTAAACCTTACTATCCATCACAAACCGTCAGGAAACCCAGCTACCTAAACACAGGCTTGACAAGCACCATGAATTATGGGAAAACTATTCTAACTAAGGAAGCAGATCTTGTAACAACGCATGAGCTCGGGCACAACTTCGGAGCAGAACACGATCCAGACAACATACCTGCCTGTGCGCCCAGCGATGATCAGGGCGGCAAATATGTCATGTACCCTATTGCGGTCAGCGGAGATCACGTCAACAACAAGCGCTTCTCCAGCTGCAGCAAGTTCTCGGTCAGTAGGACGTTAAGGGTCAAGGCTCATCAGTGCTTTAAGGAGAGGAGCAGCAAGCTGTGCGGGAACTCCCGTGTGGAGGAGGACGAAGACTGTGACCCTGGACTCCTTCATCTCAACGACGACCCCTGCTGCACAGCTAAGTGCAAGTTCAAGAAGCAGGCAGAATGCAGTGACAGGAACAGCCCCTGCTGCAAGAACTGTAGGTTTGAAAGTGCAGATAAGATCTGTCAGGAGACCATCACCGCCACCTGCAAGGGCACGTCAAAGTGCTCAGGCAACAGCAGTGAGTGTCCCACCCCTGGAAACCTGGCTGATAATACAGAGTGTGTGGACAAGGGCCGATGCCAGAAGGGCGAGTGCATGCCTTTCTGTGAGGCCGTGCATCGTCTTGAGTCCTGTGCCTGTAATGAGACTGAGAACTCGTGTAAAGTGTGCTGTAGAAGCAGCAGTGGGCTGTGCGCTCCCTTTGACAGTAATGGGTCGTATCTTTACCTGCGCAAGGGCAAGCCCTGCACCGTTGGCTTCTGTGACGGTTCTGGTAAATGCATGAAGCACGTCCAAGATGTCATCGAACGTTTATGGGACTTTATAGACAAACTGGACATCAACACATTTGGGAAGTTCTTGGCTGATAACATAGTTGGATCAGTGGTggtcttctctctcctcttctgGATTCCCCTAAGCATATTGGTGCACTGTGTGGACAAGAAACTGGATCAACAATATGAGGAAAACTCCAAAACCATGATGTACCCAAGTAGCGCAGAGATAATGAGCGGCCTGGAATCGGCGCCCATCCGCATTGTGAAGGCCCCTCATCTGCATTCAGCGGGAGCGCGACCTCAGCCCTCGCTGGGCCCCACGGGCCCCGGCGTCTCACCGGCACAGGAGACGCTCGCCGGCCCAGACCCAGCCAACCTCTCCGCCGCACTCAAAGCGGATCCGCTGCGAATGGCCACAATCGAGGAGGACCCCAGCGGAGACTCCTCTCACCTGGAAGAGGACGGCTTCCGTCAAAGCGGCACAGCTGCCAGGTCCTTCGAGGACCTCACCGGACAGGCAACGCCATCCCGCGGGGACAAGAAGCGGCTGACGAGACAGGCCCGCATTGACAGTAAGGAGACGGAGTGCTGAGGGACTCGGGGGGCAATCGGGCTTCGTTTAAAAGTGTATGTGATGTGTAAACTGCTGACGCATTTCAGTTGGCTCTTAGGAATTTTGTAGCATTCCTTTAATGCACAATTGTAGTTGTTAAAAATAGAATGCTACAGAAACTGGCAAGAGAAATGTCTCAGcatttggtcaaaaaaaaattcagtagaGCTTTGGACAGCATCTTTGGCGGTGAGATATGACTCAGCGGTTATAAGCCGGCAAAAAGACAAATCTAAATGTTGTCAAAATCAAACCTGTAAATAAAATTTTCCTTTGTGGAAGCACAAATATTCTTTTTGACCCCAGTGACTATTGTATGGACACAAAAGGAATATCTTTATGTTCCGCCGGAGAGAGCAAGTAATGCCGGTTgtgtgaatgatgacagaagtttaATTTTAGTGTAAACCATTCCTCTTAATGGTTTTACTCTTTTggcgttgttgttgtttttttgtggtaattGACAATCCCAGGTGCTGTCCTTaaatcttaaagggacagttcaccttcACAATGATGCTATCGTTTCCTCTCcttcatgtcgtttcaaacccaaAAACCACAAgggtatttttaatgaaatcagagATTTCCATccctcattaaaaatgaattctcCCAAAACTttcgctttttaaaatgttcataaagaCTGTATATAAAAGAGTCGAGCATTTCAATCCAGGTCTTCTGCAGAGGtgcaatcattttatatttgcttttcatttacCATAAAGGACGAGCTCTTCATACTGCAGTTTGTGTAGATCAACGTATGGATGATAATAAAATCTAGCATTTAAACCtgttatgggtttggaatgacacgagggtgaggtttggtaaactatccctttaactcgtatttaatattcttttaataCAGTCAGTATGTGCCTTGTAGCATACACTCAGTAGTGcaaattgtttgtatttttatgtatgtataccTCATAAAGAACATGAGCAGCAGGACTACTGCATGACTTTTAATGTTACACTGGTCGACTTGCTGAGAACATTTAAGCTATGCATGTCCTACGCCCTACgtttatgaattaaatgtcATACGTGTTAGGAAACTGTAAGACGAGAGTTTTATTTGACCTGTCCTTAAGGCTTAAAAATTgcacatcattttttttgcattaagttttgtttggtttgattTGTACTACTACATATAGCATCTCGTGTCATTTTAATATAGCAGTATGAATTTGAGAAACACTGAGGGATGTGCGCATTTCgtagtttttctatttttgccaCTAAAATGGTTGTACAGGTGTCCAAAACCGGTCGATATAGTATTCCCCCCACTGTGAAATATCAGACTTTAACCATTAGTCCAATTTTGAGATTGTATTCAATTTTAACGTGCCATAATAAGTCAAACGACTGCGTATAAGTTTTGTATTGTTTCCTACCTTCCTGTATATCAAATCAGAAGTAATTAAAAACGCCTCACTTGGATGTAGAAAGCTGTATCTGATCTAAATCCGCTATCATTCagtgtctgtgtttttgatgCTCGGTTATGTcccatttatttaacatgtattCTTGGGGTTTGAAGCCACACGAATAAAATGTCTCTACACTGa

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178735 lncRNA downstream 71644 14088640 ~ 14088875 (-) True G120989
TU178715 lncRNA downstream 174300 13981547 ~ 13986219 (-) False kidins220a
TU178729 lncRNA downstream 184293 13975747 ~ 13976226 (-) True G120983
TU178728 lncRNA downstream 196649 13963593 ~ 13963870 (-) True G120982
TU178726 lncRNA downstream 226834 13933420 ~ 13933685 (-) True G120980
TU178834 lncRNA upstream 219692 14391384 ~ 14392042 (-) True G121051
TU178856 lncRNA upstream 279931 14451623 ~ 14456789 (-) True G121069
XR_006252970.1 lncRNA upstream 290433 14462125 ~ 14580868 (-) True LOC122361512
TU178876 lncRNA upstream 547867 14719559 ~ 14724754 (-) False LOC122361652
TU178903 lncRNA upstream 605194 14776886 ~ 14777109 (-) True G121096
XM_043262967.1 mRNA downstream 13306 14142944 ~ 14147213 (-) True itgb1bp1
XM_043262938.1 mRNA downstream 76578 14040353 ~ 14083941 (-) False mboat2a
XM_043262940.1 mRNA downstream 76579 14040353 ~ 14083940 (-) False mboat2a
XM_043262939.1 mRNA downstream 76579 14040353 ~ 14083940 (-) True mboat2a
XM_043262908.1 mRNA downstream 122196 13985714 ~ 14038323 (-) False kidins220a
XM_043262951.1 mRNA upstream 1579 14173271 ~ 14204581 (-) False rnf144aa
XM_043262953.1 mRNA upstream 1579 14173271 ~ 14204536 (-) False rnf144aa
XM_043262950.1 mRNA upstream 1579 14173271 ~ 14204527 (-) True rnf144aa
XM_043262954.1 mRNA upstream 1579 14173271 ~ 14204423 (-) False rnf144aa
XM_043262952.1 mRNA upstream 1579 14173271 ~ 14193262 (-) False rnf144aa
TU178546 other downstream 960492 13196907 ~ 13200027 (-) False LOC122361883
TU178308 other downstream 1339851 12817192 ~ 12820668 (-) True G120660
XR_006253087.1 other downstream 2219506 11918290 ~ 11941013 (-) False evla
TU177874 other downstream 2355806 11800703 ~ 11804713 (-) False alkal2b
TU177672 other downstream 2842278 11303115 ~ 11318241 (-) False ush2a
XR_006253090.1 other upstream 641228 14812920 ~ 14839813 (-) False myo6b
XR_006253025.1 other upstream 839134 15010826 ~ 15026415 (-) False ptgr2
TU179062 other upstream 912126 15083818 ~ 15099924 (-) True crip2
TU179418 other upstream 1513847 15685539 ~ 15686948 (-) False LOC122361708
TU179430 other upstream 1517199 15688891 ~ 15689794 (-) True G121438

Expression Profile