RNA id: XM_043262942.1


Basic Information

Item Value
RNA id XM_043262942.1
length 3071
RNA type mRNA
GC content 0.44
exon number 8
gene id tedc1
representative False

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 13384540 ~ 13395619 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTGTTAAAGTGAAAGAAGTTATTACTTCTCTCTGTAAATTGCTCTCTGTGCTAAGCGTCGAGTCTATACCGACAGCCGATGTATTCAGGAGAGCCAAATTCGACAGAAAAGATGCGGTAAGATCATGGCAGTGGACATGTGGAGTTTGCTAAGTAGGCTTCTGCGGAGAGCTTTTACTCGGGATTGTGCGTGCCCCGACTCTAAAGACCAAGACTTTGATGTGCAGCTGCTGTTTGTGAGGAGTGCTCTGTGTCACTGTGGCTATGGGGCCCCGTGGGTGGTGGGGTCCCGGCCCCCCGGTCAAAGAGAAGAGGTGGGGAGCCGAGATCTGCTCTTGGCGTTTGGCTGGGTTCTTTCATCGGGCAATCTACTGGACTTCCTTCTCGCCGAGAATGTTCATCAATTAGACACTTTATCATCTGCACCGATGATCACCCAGGGTCTAACACCAGGAAAGATTGACATAGCGGCACATGCTCTAGGAGTGGATACCACAATGAAGAAGGACCAGGTGCTACAGGCACTGCAGTGGCAATATGGGAAACTAAGGCTCCAGTGGAAGAGCTTACTCTCAGCCCAGGAAGAGAGGTCCAAATTCACCCACAGGGTTATCTCCAATATCCGCTCCTCTTCTTTCTGTCAGCCTCACTCCACTGATTCCCATCATGACAACACATCAACTGCTCTTGACAAGGAGTTGGAGCGGATACAAGCATTGAATGGAATTCTGGAGGCGTATCTGGATTGGAAACTCCATGAACCTTTATTCTGGTGCTGGATGGACAGCGTGATCGACAGCTCCCTCGCCGATGCATCTGAGGAGGAGCCCATCGATTGGCCACCAGGGGAGCAGGCTGTCACGGTGAGGTGTCCCCACGGCGACGAGACCAGGAGAGTAGTCAGACAACTTGACAAGATGTTGCTAAGGCTGCAGACAGAACTGAGAGCCAGAAGAATAGAGCAGTCCACTCTCACACTCACCTCACAGGCGGGACGTCAAGGGGCTTCTCGGCTCTCTGAAAGTCAGAGAATGGAGGTGGAGAAGAAGGTTTCAGTCTATTTACAGGGTCTACGTCTTACTAACACCTCCGCAATCGCATCAAGGGGCTTTTTGCCATGTCTGCAGGATCCACAGCCCACAAAGCCAACTCACAGGTTCCACACCGGAGAACCTGGCCTGGCAGTGACAGCTGGGAAGCTCCAGGCGTCGACGGCTCTGGATGAGCTGAGGGAGAGGGAGGCTGTACTGCAGTGGCAGCTGGAACGATTGAGGCGAAATATGAGAATGGAAATTCAGAGACAGGCCAGCACAATGGAAGGGATGGTTCTCATCCCACCACTTAAGAGATAAACACACTTTTCGCGTCACTATATGCACTGCGATTCTGGCTGCATTTTGAGTCCCTGAAGGTGTACATACTACATTTCTTTTCATTGGAATTAAAACACTAACGTCATTTGGAATTAGAGAATGCtttgttgttcatttttatgtatttaaaaagactgccgctatgtgaatgtgtgtgcatgggaaaaaaaaacaaaacaaagaaacttcAAGGGCATTTCATCTATACTTCAATACTCgcactgaaaatattattttgactaCTCGAATGCATCAAGCCACACTCTGAAAAACAACACTAATGACTCAGACTCAAGCAAATGGCTGACCTCTGTACTTGCGTGTACTTTGCGGTGTGCTAGAGAAAATGGAAgacatttgaaatcattttttttttatgcatgccaCTTCTAGAGAGCAAAACAGCCTGCAGTTTCCAAAGTAGGTCATTCTTTCAGTTGCTTTGCGAAACCTGTGAAAGTTTGGATCGaagtttggggaaaaaaatcaaacccCAGTAATGATTAGCAGCTCCCTGCAGAGATCTGAACCCAGTTTTACTGAGCTGTTCATAACATGAGAGGATTTCGCCTTTCAAGGCCAAGTCAGTTACTACCAGCCAATTGGTGTGGTCTCAATTACATTTGTAAAGCTGTAAACAAACTAGGTGTGTGAGATAACATGAGCTGTTGGGCAAACTAAAGATGCTGGCACAGGCTGCTGTATTAGCTGATTAAGAAAGTCATTTCCAACACCGATTTTCATTAGGATTATAAGAAGAAATCCTAATCTAGACGCTGTACAGAGCATGACGAGTTCTAAAAGGATTTTCTCTCCATTACCTTCGGCCTTCTTATCTAGGCCGGAATTGCTGTTTACAACTGAGGGAATGCAAACACACTGACTCGGCGGGTCCATTTCCCTGATGTTTGATGTGTGCTCTAAATGAACTGAGATTCATGTAGCTGGAATTTAAGGTTATAATTATGCTATTATCAAGAGAGTCAACCAGTGTCAAGACAGGAACTGGTGTGGGTGGGTTCCTCTCTACCTGGAGCTCTCTGatgaatatttcaataattataTGCTGCAGATGTGTGAAACGCGGCCTAAGTGACGCATTTTCTCTTGGGCATCAATATTAATAGGTTGCAGTTTTCACACTTCATGTGTAAGGTGGTGCTGCATGGCAGAATTGTCGCAGAAGTGGCTCGGCAAATAGAGTTTCAAAGCtgaatcttcttttttttttgtaaactgaaCGCACAATGAAAACGTAGTTTCACATATATATCAGCTTGTATTTTACAGAATGgtcttttaataaacaatttaaaataataatgaagaaCTACTACATCTTTTGGGGTAAGTCTTTAGATTTACACAATAGCCTCATCTTAAGATAGTAAACTCTCCCGACAATGCagactttttaatgcatttgctgGCAAAACCGGAAAGTACTTTATCATCTGGCCGGctctaatctgattggctgatttgTATACAACTTCCCTGATgcacacagattttttttatttgtttttaatcagcttgGAACGTGGACATCTTCCAAATCTGAATTTTCCAGAGTTTACAAGATAAGCGGcatcaaatgtttgtttgaagcacttgttattttagtgttactGGTACTGTTATAGTTTGttaatattccaaaaaaaaaataaataatttgaattttgatgtcttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178577 lncRNA downstream 88004 13296270 ~ 13296536 (-) True G120871
TU178535 lncRNA downstream 97253 13217727 ~ 13287287 (-) True G120835
TU178571 lncRNA downstream 115168 13268577 ~ 13269372 (-) True G120865
TU178532 lncRNA downstream 201091 13180074 ~ 13183449 (-) True G120833
TU178543 lncRNA downstream 210349 13173948 ~ 13174191 (-) True G120843
TU178655 lncRNA upstream 382171 13777725 ~ 13815014 (-) True G120929
TU178726 lncRNA upstream 537866 13933420 ~ 13933685 (-) True G120980
TU178728 lncRNA upstream 568039 13963593 ~ 13963870 (-) True G120982
TU178729 lncRNA upstream 580193 13975747 ~ 13976226 (-) True G120983
TU178715 lncRNA upstream 585993 13981547 ~ 13986219 (-) False kidins220a
XM_043262948.1 mRNA downstream 38949 13318411 ~ 13345591 (-) True tmem121aa
XM_043262963.1 mRNA downstream 100845 13278776 ~ 13283695 (-) True ccdc28a
XM_043262962.1 mRNA upstream 846 13396400 ~ 13399366 (-) False dnal1
XM_043262961.1 mRNA upstream 846 13396400 ~ 13399331 (-) False dnal1
XM_043262960.1 mRNA upstream 846 13396400 ~ 13399230 (-) True dnal1
XM_043262947.1 mRNA upstream 231071 13626625 ~ 13631998 (-) True LOC122361864
XM_043262906.1 mRNA upstream 590160 13985714 ~ 14040211 (-) False kidins220a
TU178546 other downstream 184513 13196907 ~ 13200027 (-) False LOC122361883
TU178308 other downstream 563872 12817192 ~ 12820668 (-) True G120660
XR_006253087.1 other downstream 1443527 11918290 ~ 11941013 (-) False evla
TU177874 other downstream 1579827 11800703 ~ 11804713 (-) False alkal2b
TU177672 other downstream 2066299 11303115 ~ 11318241 (-) False ush2a
XR_006253090.1 other upstream 1417366 14812920 ~ 14839813 (-) False myo6b
XR_006253025.1 other upstream 1615272 15010826 ~ 15026415 (-) False ptgr2
TU179062 other upstream 1688264 15083818 ~ 15099924 (-) True crip2
TU179418 other upstream 2289985 15685539 ~ 15686948 (-) False LOC122361708
TU179430 other upstream 2293337 15688891 ~ 15689794 (-) True G121438

Expression Profile