RNA id: XM_043262954.1


Basic Information

Item Value
RNA id XM_043262954.1
length 3420
RNA type mRNA
GC content 0.44
exon number 8
gene id rnf144aa
representative False

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 14173271 ~ 14204581 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACGGCTACGACGAACGCGTCGGtcttaaactaaaatgttcttttttttaaacccacgGTATCCTCCGTTTACGACAGTATAATGACTTTCAGTAACGCAGTACGATTTGTGCAGCGTTCATCGTTTTAAAGGCGAATGCCTGTGTCAGCAGGTCAATGTTTATCATAAAATATcggttttatttgatttggcAATGCTTTATGATCTACATTGGGAACGGCGAAACTCTACTTTTCTGGATATGCAGCTCATTCATATAGctcTGCGGCAGGCATCATGACCACAGCTAGGTACCGACCCACCTGGGATTTGGCCCTGGACCCGCTGGTGTCCTGCAAGCTGTGTCTTGGAGAGTTTCCCTTGGAGCAAATGACCACCATCACCCAGTGCCAATGCGTCTTCTGCACCCTGtgcCTGAAGCAGTATGTGGAACTTCTCATCAAAGAGGGCTTTGAAACGGCCATCAGCTGTCCAGACTCAGCCTGTCCAAAACGTGgacatttacaagaaaatgagatTGAATGCATGGTGGCCACCGAGATAATGCAGAGGTACAGGAAGCTGCAGTTTGAGAAGGAGGTGCTGCTGGACCCGAGCCGGACCTGGTGCCCGTCCTCCACGTGCCAGGCTGTGTGCCAGCTGAAGGAGTCAGACACGGCACTTCCGCAGTTGGTGCGGTGCAACGTTTGCACACACGAGTTCTGTTCCGCCTGCAAGGCCAGCTGGCACCCGGACCAAGACTGCCAAGAGAACGTTCCCATCACCGCGTTTCTGCCCGGAGAGAGCAGttcGTTCTTTAAGGCCGACGATGACGACGCCCCCATCAAACGCTGTCCCAAATGTAAAGTGTACATCGAAAGAGACGAGGGCTGTGCCCAGATGATGTGTAAGAACTGCAAGCACGCTTTCTGCTGGTACTGCCTGGAGTCTCTGGACGACGACTTCCTCCTGATCCATTATGACAAAGGACCCTGCCGGAACAAATTAGGCCACTCCAGAGCCTCGGTGATCTGGCACAGAACGCAGGTCGTCGGGATCTTCGCCGGGTTCGGCCTGCTCTTACTGGTAGCCTCTCCGTTCCTGCTGCTAGCCACGCCATTCGTGCTGTGCTGCAAGTGCAAGTGCAGTAAAGGCGACGATGACCCCTTACCCACCTAACAGCCCCGACGGGAGCGGTCCCCGTTACGAGGAATTCCGGTCATCTCTTTTAAtcgttttttcttttccttcctcGCCTTCGAGCTCTTCATCACCCGGCGGGACTTGCGCGAGCCATCTCCCGCCGCGGTTACCGTCACAGCTAGCTGAGTAGGCTCCATCCCGGCAGGCCTGATGAGACTAACGGAGACTTCCCGAGCCTGCTGCTTGCTTAGGTGGAGGATCGGAGAGCCGGGGGTGCCCTCCGCAGTAACGAAAGGGAGGTTACTGAAGGAGCGCGGCGCTGTTCCATCCCGGCGCTCGTCTATTTTCTGGATGTTTCGCATTATGTGGCTGTTCTGGAGGGTTCTGTTCTAATAACAGAACACGTATTCGGTGTGTTTATGTCCGTTTCTATGTGCGTAGTAGCATTTCAGTCACACGGCCTATTCTTTATTACTCGTTTTGCACAGATAAGGGGCTTTTCGTCACGTTTTATAGCTAAGATGCTACTTTAGATGTTTATTAACTGCTAAATTTCGCATTCAGAAGTTTTCGATGCCAcgcttttttcttttaccatGTCAGTTTATTGTCTTTTAGTATGTAACTATCGACGAACCTACTTTTGATTTGGCAGATTTGGGCTGTCGACGTCGTCAAGAGATGATGTTTGCCATCGAAATGTCTCTCGGTGCGCTTAAACATCGTTTTTAGCCTCGCGCCACGGACCTCCCTAAAGCATAAACGTGATTCCAAAGCAGGGCTGTTCTGTGAGGTTACGATGCCAAACATTGAGCTACTGAGAGAGTCACTCAAAAGACGCTTTAACCTTAATCCGAGCACCCGTCATTTAAATGAGAACTAGCAAAATACCGAAACCAAATAAAACGCTTCTTCTTTTTCCCACTCCTTGATCATTTTTCTCCGGCGGTCACCTTTTCGTTTCCGTCAGACAGtttaaaacaattgaatttttaaattatggaACAGTCCCTGTTATTTCTGTCTGGGGTTAAACACCGATTTCGAGACTGTTTGTCTTAACATACTTACAAGTCCAGCGCTGCATCTATGCAAGTTCATATAACTTGAAGATAGAAAAATATGGTCTCTGCTGTCTTGAACTAAACGGTTGCTTCGGGCAAGTTAGCGTGGTTTAATTAAAAGGCGAAATATTTGGATTTATCATCAAAACTGAGTTTCAACTACTACTCATTACAAATACTATTCACACGATATCTTTCATTTAATTGACTGATTTTAAAACGGAGGTGTGATACTGAATGTCATCATCTTGCCTGCACCGCCTGATACAGCAAGCGTACGTTCAAAAACTGTTGCACCGTGTAACTCAGAAATTAGTGAAGGGCGACAATTAATTGAGATTAATCCCATCCGTTAAggtttttgtgtaaataatagACTATATGTGtctgtactgtgtatatttatatatttatctatataaatgtacattgtatattgaagaaatatttaatgttatatagtaaatacaatataaatgcaaatactgtgtaattatgtatataaattatatatatataaaaaataaaaacttttattttggatgtgattaatcacgattaatcgttgCCCGGCACTATCAGAAACATTAAGATCAGAGCACTTGCCATATGTGTAGCTGGATAATATGTAGCTCATTAGTTTTCCTTGTGAGATTCGCTCATCTGCCATTTTTGGTTAATGTGTAATGGAACGGTGCCAAATTGGAGGTTGTTATGACAAGGTGGATGTTTTCTCAGTATTCATAAAGTGGATTTTTGGTGAACATTCGACCTCCATCTTTTGGTAGCATTATCCCGTTTTAGCCTTAAAGTATTGGAGTACCTCACTGGTTTTCTCTCCTGTAGCTgagggcttttttttcttttcgtttttttttttttattattattatttgtttatcctcaggttCTCTTAGATGAATAATTTTGGCACTTTTCAGCTTGTGTGATGTTTAAAGGAATACCTTAATGCATACGCAGTCGCGACATTGTACATGAAATGGCCGTGACGTACAGTGCAGTGAAAACGGAAACCTCAGAGCTGATTTTGCTACGTTATTTTCTGATTATGACCAACAAAAATCAGCATGATGGATAAAATGAAAGCACAGCATCACTGTCAGTTACGAATAGCACACAAGTTACTCAGTCTAGCTGAATCTAATTGTGCTCACGTTAGTCAACAACATTTGGCCATTTCATGTAGAATactataaatgcttttatatatat

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178735 lncRNA downstream 84396 14088640 ~ 14088875 (-) True G120989
TU178715 lncRNA downstream 187052 13981547 ~ 13986219 (-) False kidins220a
TU178729 lncRNA downstream 197045 13975747 ~ 13976226 (-) True G120983
TU178728 lncRNA downstream 209401 13963593 ~ 13963870 (-) True G120982
TU178726 lncRNA downstream 239586 13933420 ~ 13933685 (-) True G120980
TU178834 lncRNA upstream 186961 14391384 ~ 14392042 (-) True G121051
TU178856 lncRNA upstream 247200 14451623 ~ 14456789 (-) True G121069
XR_006252970.1 lncRNA upstream 257702 14462125 ~ 14580868 (-) True LOC122361512
TU178876 lncRNA upstream 515136 14719559 ~ 14724754 (-) False LOC122361652
TU178903 lncRNA upstream 572463 14776886 ~ 14777109 (-) True G121096
XM_043262933.1 mRNA downstream 1577 14160519 ~ 14171694 (-) True adam17a
XM_043262934.1 mRNA downstream 1579 14160519 ~ 14171692 (-) False adam17a
XM_043262967.1 mRNA downstream 26058 14142944 ~ 14147213 (-) True itgb1bp1
XM_043262938.1 mRNA downstream 89330 14040353 ~ 14083941 (-) False mboat2a
XM_043262946.1 mRNA upstream 2357 14206780 ~ 14209877 (-) True rsad2
XM_043263234.1 mRNA upstream 187980 14392403 ~ 14397785 (-) True LOC122361997
XM_043262974.1 mRNA upstream 194682 14399105 ~ 14406676 (-) True LOC122361878
XM_043262299.1 mRNA upstream 305349 14509772 ~ 14511663 (-) True sox11a
XM_043262482.1 mRNA upstream 505068 14709491 ~ 14733577 (-) True LOC122361652
TU178546 other downstream 973244 13196907 ~ 13200027 (-) False LOC122361883
TU178308 other downstream 1352603 12817192 ~ 12820668 (-) True G120660
XR_006253087.1 other downstream 2232258 11918290 ~ 11941013 (-) False evla
TU177874 other downstream 2368558 11800703 ~ 11804713 (-) False alkal2b
TU177672 other downstream 2855030 11303115 ~ 11318241 (-) False ush2a
XR_006253090.1 other upstream 608497 14812920 ~ 14839813 (-) False myo6b
XR_006253025.1 other upstream 806403 15010826 ~ 15026415 (-) False ptgr2
TU179062 other upstream 879395 15083818 ~ 15099924 (-) True crip2
TU179418 other upstream 1481116 15685539 ~ 15686948 (-) False LOC122361708
TU179430 other upstream 1484468 15688891 ~ 15689794 (-) True G121438

Expression Profile