RNA id: XM_043262965.1


Basic Information

Item Value
RNA id XM_043262965.1
length 1368
RNA type mRNA
GC content 0.43
exon number 6
gene id ccdc28a
representative False

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 13278776 ~ 13283695 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gTTTCTGACCGCGGCTTTAGTTTAATTACAGTGCGCGTTGATATGACCGAGATGACGTGTAAATCCCGGAAGTGCCTTTTGTAAACTTGCTGGTCGGTTGTACCAACTTTAGGGCAGCCTAATCTCGTCGAGAATGTCTTTCAGAGGGGATAATATATCGGTTTAAACAGCGGAGTCTTCCTTTGTGCGGTAAAATTATACGTAATTCGGATGACacaatggaagaaaaaaataagaaacgtAAGAGCCCCAAACCATCTTCCAACCAGCCTCCTCCCTCGATCACCGCACGAAAAACCACATCCGGCGGCAGATCGCTCGGTGTTGGCGGTACACACTCCAGCCAGAGAACAAAGTATCGCAGGGGAGTGCGAGACAAGCCAAGGCCTCAGAGTCAGTCGGGGAAGAGCAACCAGTCTGCCCACATCCAGCACTCGTTTCTCACGGACGTGTCTGATGTTCAGGAGATGGAGAAGGGGCTGCTCGGCCTTCTTAACGACTTCCACTCTGGAAAACTGCAAGCTTTCGGCAACGAGTGCTCTATTGATCAGATGGAGCATGTGAGAGAAATGCAGGAAACGCTGGCACGTCTGCAGTTCGATCTGTATGGAGAAGTGGATGAGCTGCCAGAAGACCAGAGGAAGTCCGCTTACGACACCAACATGGATAAACTGTTATTAAATctgGAAGAGTTGAGCTCCTCAATACAAAAGCTCAACCTTGCTGACAGTCAAGATGTCCCCAGAACATCTAGCATATGAACGGCGAAAGCTCGACCATGGAGAATACAGTGTGCATATTTAGCACAGAAACGCTGTGGAGAAACAGCAGTATTACAGGCGTAACAGTGACACTGGATCTTAAACTTGTAGAATTGGTCCGCTTGGCTTGTTTGCACTCTATAGTTTTATAGATATGATATCAAAGAACAAATCCAAACAGTTGTGATGGAAACACTCACTTGTCCTTCTCATCACCCGTTACGAGAAATATATGTTCATGAGGTAATGTTCGATAACGTTGTGGTTTCTAATCTTATGCTTAAATGTTGCCTTGGAGTTGTACAATAGCAGCACCTTCGCATTTTCACTAATTCACTTTAACAAGGAACCGATGGGCTCCGTCTGTATTTATGCCCTGTCTCAAGGGAATGAACGAAAGAAAATGGCAGATTATTTTCATCGAGACGTCAGTTTCTCGAGACTGCAGAATGAAAGtaaaattgtattgtatatttttggttatagtcctatttacatattttattttgaattgaaatgttGGAAATGTAAAGCGTAACATAGGCTACTGGCTGAttgttgatttttattcatttttctgtcAATAAAATTCAATTGTATTACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178571 lncRNA downstream 9404 13268577 ~ 13269372 (-) True G120865
TU178532 lncRNA downstream 95327 13180074 ~ 13183449 (-) True G120833
TU178543 lncRNA downstream 104585 13173948 ~ 13174191 (-) True G120843
TU178423 lncRNA downstream 127438 13151008 ~ 13151338 (-) True G120767
TU178418 lncRNA downstream 187406 13091080 ~ 13091370 (-) True G120762
TU178577 lncRNA upstream 14840 13296270 ~ 13296536 (-) True G120871
TU178655 lncRNA upstream 496295 13777725 ~ 13815014 (-) True G120929
TU178726 lncRNA upstream 651990 13933420 ~ 13933685 (-) True G120980
TU178728 lncRNA upstream 682163 13963593 ~ 13963870 (-) True G120982
TU178729 lncRNA upstream 694317 13975747 ~ 13976226 (-) True G120983
XM_043262917.1 mRNA downstream 105 13270357 ~ 13278671 (-) False LOC122361854
XM_043262915.1 mRNA downstream 105 13270638 ~ 13278671 (-) True LOC122361854
XM_043263258.1 mRNA downstream 51039 13206002 ~ 13227737 (-) False efr3ba
XM_043263257.1 mRNA downstream 51040 13206002 ~ 13227736 (-) True efr3ba
XM_043262982.1 mRNA downstream 78084 13193177 ~ 13200692 (-) True LOC122361883
XM_043262948.1 mRNA upstream 36981 13318411 ~ 13345591 (-) True tmem121aa
XM_043262941.1 mRNA upstream 103110 13384540 ~ 13395619 (-) True tedc1
XM_043262942.1 mRNA upstream 103110 13384540 ~ 13395554 (-) False tedc1
XM_043262943.1 mRNA upstream 103110 13384540 ~ 13395523 (-) False tedc1
XM_043262962.1 mRNA upstream 114970 13396400 ~ 13399366 (-) False dnal1
TU178546 other downstream 78749 13196907 ~ 13200027 (-) False LOC122361883
TU178308 other downstream 458108 12817192 ~ 12820668 (-) True G120660
XR_006253087.1 other downstream 1337763 11918290 ~ 11941013 (-) False evla
TU177874 other downstream 1474063 11800703 ~ 11804713 (-) False alkal2b
TU177672 other downstream 1960535 11303115 ~ 11318241 (-) False ush2a
XR_006253090.1 other upstream 1531490 14812920 ~ 14839813 (-) False myo6b
XR_006253025.1 other upstream 1729396 15010826 ~ 15026415 (-) False ptgr2
TU179062 other upstream 1802388 15083818 ~ 15099924 (-) True crip2
TU179418 other upstream 2404109 15685539 ~ 15686948 (-) False LOC122361708
TU179430 other upstream 2407461 15688891 ~ 15689794 (-) True G121438

Expression Profile