RNA id: TCONS_00009854


Basic Information

Item Value
RNA id TCONS_00009854
length 2756
RNA type mRNA
GC content 0.40
exon number 7
gene id XLOC_005058
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1338341 ~ 1345562 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGTCGAGTTGAAGACTAAACGTTTCTTTCAGTCCTCCATGTCTGTATCCTGAACGAATGGATTCAATGGCTCAGCGTCCAGACCGTGATTCTCAGATATTTATAATAGGATGCGGCATCTCAGGAATCGGTGCTGCTCAGAAATTAATCAAACACGGTTTTCATAATGTACGCATTATAGAAGCAACTGCAAGAAGCGGTGGGAGAATACGAACGGGCAGACTGGgTGATAACATCATAGAGATCGGTGCCAACTGGATCCATGGCCCGTCGAAGGAAAACCCAGTGTTCCGTTTGGCATGTGACTATCAGCTCCTAGATAAAGAGTCGATGTCTGAAGAAAACCAGGCCATTGACATTGGGGGTCATCCTCTGTTTGTTCCCAACTGGTTTACCAGTTCAGGTCGGAAACTGGGGCCTGAGACTATGGGCCCAGCGCTTGAGTTTTTCATGACATTACTGGAAAGGAGCCAGCAGTTCCACAGCACCGGTGGAGAACCTCTGCCGAGTGTTGGAGAGTTCATCAAGGCAGAAGCTGAACGTCTGGCCCCAGAGGAGTGGAAGGAGGACAGAGATAACTTTGCAGTGAGGATGGCCATGATAAACACACTCCTCAAACTGGAGTGCTGTGTCAGCGGAACACACACCATGGATGATGTTGGTCTAGGAGCATTTGGCATGTATACAACTCTTCCAGGACTTGACTGCACTTTCCCAGGAGGTTATGAAGGTTTGACTGATCACATGATGAAGGAGCTTCCCCGAGACATAGTCTTATACAACAAGCCTGTAAAGTGCATTCACTGGAACTACACCAAGAATGGGCCCAACACTGGAGGAACGTCATTCCCAGTTACGATTGAATGTGTTAATGGAGAAACATTTGCAGCAGATCATGTTATTGTCACAGTTCCACTTGgatACATGAAGAAGCATCAGAACACTTTTCTGAGTCCTTCTTTTCCACTGCACAAACTACACTCCATTCAGAGAATGGGCTTTGGGACGAACAACAAGATCTTTGTTGAGTTTGAGCAGCCTTTCTGGGATGAAGACTGTGAACTTATTTACCTTGTATGGGAGGACGAGACCCATCTTACTGATGTTGTTTCTGATTTGAAGATGTCCTGGATTAGGAAGTTGACTGGGTTCACTGTGCTGAAGCCCACTGAAAGATTTGGACATGTGCTCTGTGGATGGATCGCAGGGCAGGAATCGGAGTACATGGAATCTCTGTCTGAACTAGAAGTGCTGCAGACTGTCACACAACTCCTTCGCATATTTACTgGAAATCCAACTATTATGCCAAGGAAGCTGTTACGATCTCAATGGTTCCATGAGCCCTATTCCTGTGGATCTTACTCCTACGTGGCCAAAGGTTGCTCAGGATATGACATCGATAACCTCGCTGAACCCTTGCCGTTGAAAGGCTCCAACTCAAAGCCTTTGCAGGTGTTATTTGCAGGAGAAGCTACACACAGGTCTTTCTTCTCTACGGTGCATGGAGCTTTACTCAGTGGCTGGAGAGAGGCAGAGCGTCTGATATCTCACCACACTTCTGCTTCTGGATCATTCTCATCTAAACTGTGAATGCTGTCCTCGTCTGGAAAGATTGCCCTTTTCATTGAAACTGAAAGGGTTTGTACCTTAAAATCGTCAGTAAAGGATTATCCGGATGTAATGAATGACTGCTTGGCAATTGTCCCAATGCCTTTGCAAAAATATAAGTGGGTATTTAAAAATTTCAGTAACGCTTTACACTGAAgttgcattagttaacatgaacaaacagtgcACGGCGATACAGCATATATTCAAATACAACAATGCTCATTTCATTGTTACTAATCATGGCCTAATCAAAAGTTGTAAATATACACAGGGCTTTTTCCTGGCTCAGAATAAAGCAGAGGGGTATCCTGATTGTGACATTTTTGCTACTTAAAACGAacacattttgcattattttaatattatcaagtaacattatcttattttaaaaagGCTAATGTTAAATGTAATGAAATACATGACCACTGCTTGAGCATCACTTGGGGACTGTTGGTAGCCATGACTTTCTGCctgatatattttatatagattaAAATGTTATCTATTTACAGTTGAGGTCAACATTATTAAACCCCTTGAATTATTATCGCCcctgttgatttatttttttcatcaagtttttgtttaatggagaaaagatttttttaacacatttctaaacataatagttctaataactcatttctaataactagtttctcttatctttgccatgatgacagtaaataatattttaataaatattttccaagacacttctatacagtacAAAGGGatattttaaggcttaactaggttaattaggttaactaggcaggatagggtaattaggcaagttattgtataatgatggtttgttctgtagactatcaaaaaatatatggcttaaaggggctaataattttgaccttaatgttttttttttttaataaaacaaataagactttctcctgtagaaaaaatatcagacatactgtgaaaattttcttgctcttaaaattcatttgggaaatatttaaaaaagaaagaagatttcaaagggcagctaataattctgatttcaactttatatattagttcatgttaacttttGCAACAAATGAGGCCTTATTTTTGTGTTACCAAATgctagttgttgtttctgtgatctgaaaataatttatatatattaaacatattttctc

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0046592 polyamine oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-204 Predicted to enable polyamine oxidase activity. Orthologous to human PAOX (polyamine oxidase).

Ensembl:

ensembl_id ENSDART00000190181

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011055 lncRNA downstream 261227 1072485 ~ 1077114 (-) False XLOC_005057
TCONS_00009849 lncRNA downstream 338605 995830 ~ 999736 (-) True XLOC_005055
TCONS_00009826 lncRNA downstream 874352 461129 ~ 463989 (-) True XLOC_005045
TCONS_00011054 lncRNA downstream 929710 406187 ~ 408631 (-) True XLOC_005043
TCONS_00011053 lncRNA downstream 982786 337808 ~ 355555 (-) True XLOC_005042
TCONS_00011056 lncRNA upstream 107338 1452900 ~ 1453339 (-) True XLOC_005062
TCONS_00011057 lncRNA upstream 654457 2000019 ~ 2001490 (-) True XLOC_005067
TCONS_00011058 lncRNA upstream 655074 2000636 ~ 2001824 (-) True XLOC_005068
TCONS_00011059 lncRNA upstream 722401 2067963 ~ 2073187 (-) False XLOC_005069
TCONS_00010789 lncRNA upstream 722550 2068112 ~ 2073187 (-) False XLOC_005069
TCONS_00009853 mRNA downstream 253114 1072486 ~ 1085227 (-) True XLOC_005057
TCONS_00009850 mRNA downstream 303881 1014418 ~ 1034460 (-) False XLOC_005056
TCONS_00009852 mRNA downstream 303958 1028580 ~ 1034383 (-) True XLOC_005056
TCONS_00009851 mRNA downstream 306371 1015283 ~ 1031970 (-) False XLOC_005056
TCONS_00009848 mRNA downstream 338541 993432 ~ 999800 (-) False XLOC_005055
TCONS_00009855 mRNA upstream 3856 1349418 ~ 1361517 (-) True XLOC_005059
TCONS_00009856 mRNA upstream 23083 1368645 ~ 1370372 (-) True XLOC_005060
TCONS_00009857 mRNA upstream 58244 1403806 ~ 1406480 (-) False XLOC_005061
TCONS_00009858 mRNA upstream 58413 1403975 ~ 1405228 (-) True XLOC_005061
TCONS_00009860 mRNA upstream 210585 1556147 ~ 1557286 (-) True XLOC_005064
TCONS_00009831 other downstream 716052 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009859 other upstream 144910 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009912 other upstream 2940804 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 2949987 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 2952295 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 2952665 4298227 ~ 4301376 (-) True XLOC_005113

Expression Profile

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