RNA id: XM_043263166.1


Basic Information

Item Value
RNA id XM_043263166.1
length 2717
RNA type mRNA
GC content 0.49
exon number 10
gene id c17h14orf180
representative True

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 16492672 ~ 16513359 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCTTCGCGTGGGCGGCGCTGCGCGGTTCCGTCTCTTCTCCCTCCCACGCACCCTCCTGCCCTTGACTCTTACGGATCGTGggaggagggagaggagaagcagcagcagcagcagcaaaccGCTCCCGTTCCGAGGTCGCGGCGACCGATATCTGTGCGTTTTCCGTTCCGGACTGTTTCTCCATGCCCGCTCCGCGGCTCCGACGCGGGGCGGACTTGAGTGCAGCGGCGGCGGTCGTGTGGCACGTTAACGCGCGCGGCGGGTCTCTCCGGCGGGCCATCCCGAACACGGGATGCTGAACGGGAGCCGCGAGGGTTTGTTTGAACTGGGCAGGCAGCTCCAGCGGGAAGGAGACTCCCGGGCCGCTCTGCACTGCTTTTTGAGCTGCCTGCTGGGACTCACACACGTGCAGAGCTTCCACTCGCTTCCCAACTGCCTGCATCAGATCGCTGAACTCTACATTGACGACAAGAACTATGGGAAAGCTCTGCAGTTCATTCAGGCGGAGAAGATGTTCTACGAAGTGGCATTGATCGAGCTCACCTCGCTGCAGGCCAGCACAGGGTCTCAGGAAGAGGGGACATTGGGAACGTCAGGATGTCTGTCTCAAGAGGAGTTATCGGAACAGGCTTCACAGGCCCAGGATCTTGAGAGACTGGCTCAGCTCTGCATCATGAGCAAAAGACCCCACCTTGCTTTAGAATACAGTGGCAAGgCCACTAAAATCCACCAGAGGGCTTTCGGTAACGATCACCCCATCACAGCGCGGAGTCTGGAGCTGCTGGCCACCGTCTACGCTGAGATCGGAAAAACTGAATACACAAATTCATTGGGAGAGTGTGTGTCGACTCTTTCCAAAAGGTTCTCGGCCACCGAGTCGTTCAGCGACGCTCTCAGCAGCATCTCTCATAGCCATAAGGACAGACACTCTGAGCTACGGCACAGAAAAGAGCCATACGTACAACAGGAAACTCCTAAAACGAAGGTCACAAATGAAAAACCGCCCACTTCCATCCTGAAAAGGTCTAACGTGAGCAACGCGGAGTCGGACTCGTCGCGCAAGAGAAAAACCGAGAGGCGGGTTCGCTTCAGAGAGCCGGAGATCACCGTTCACGACATTCCATACTATGACTGTTTAGGAGTCTACGACTCTCCCCAGAGCCGTCTGCACCTGGCCCTGCTCACCTGCCTGTTCCTGCTTCTGTCTGCGCTGGGTCTGGCGCTGTACTGCACGGACCGCCGGAGACCCCAGCGCGCCTGCGAAGAGCTGCAGACGGCACTGGCTGTGTACCTGCTTCAGTTCAAACAGATCGTTTGGGCCTGCTGGATCTGGCTGACCATGCAATGACCGTAACTGACCACAGGAGGCAGCGGCGggcaggaaaacaaaaaaaaaaaaaaaaaaacaacaacagcataaaAGGTCAGGatgctttctgaaggactgtGGAGGAAATAGAAGATGAAGGtcctcttgtttttttattgctttgttttcaCTGTTATAATCAGACTGGCCACCAGTCGAATTCTTCGAGGATGTTCAACATCCATCTCTTTTATTTTGTGGTCGATTAAAAAGCCACGCGCTTTTCCGCACCATTAAGGGATGGTGTGCCTTTTTGCCCTTTATGGTGGCATAGCTAATGCCACATCCTCATCATAACgagcgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagatctcTGTATGTAGCTCTTTTTCCTCATATAGTGGTTCTGGATGATACGCTTTAAAAGGAACGGCTCACCAAAAATGaccatttgctgaaaatgtccGAAATGTAGTACGTTTCTTTGTCAGAACAGATTACGAAAAACTTAGCATCACGTCGTTTGctcagcgaatgggtgccgtcagagtccaaacagccgatTAAAAACAATCCATCGGTTAACTTTCGGTGAAGCTAAAAAGAGAAGCGAATTCATCGTTGAGgcgttttaaactttttttaattgggaATTGCTGTGATGtctcactctgacggcacccattcgctgcagagaaCCCATGGATGCGCAAGTGATGCAGCGCTAAACACCTCCGGATCTGTTGCGGTTGAAGAAACGCTCGTATAAACCCCGAGTGCATTTTCAGCGCATTTTGATTTCAGGCTGAATTTTTCCTTTGAAGCGTATTTTTCCACGGAATACTTGTGCAGCAATATTGCTTCAAACCTTTAGCGGAGAAACCCAATGAATGAATTGCGTACACAGGTAGAGCCCGACTGATGTATCAACAGGTCAGTATTAGGCGTGCGAGACGTTGAACGGCCGTACTGGTCTTTGAGAAGCAATATGAAAAAGAGCCATGTATTGAGTACATGCTTAATATCGCGTGCGTCGTCACGAATAGTTACATTTTAGTGACATTTAGAGAACGCTAATATAGAAATAGACACACAAACATCGCACGCGCTTATAGAATGAGTAAACTAATGGCTGGATCGTTTCCTTTGCTTTACGTAATATTTACCTCAAAGTTTTGTATCAAAAATGGTCGATTTCCGAAGCGCTATTTTTTGTCTTCGGATATAAATAGCCGCATAAGGGCTTTCCGGTTCGAAGAGTGAATTCAGGAAACTGCTGAAATATATGTACCgcattgcaaaaataaacacaggatTGAGTTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179720 lncRNA downstream 8703 16482647 ~ 16483969 (-) True G121639
TU179528 lncRNA downstream 158233 16334043 ~ 16334439 (-) True G121509
TU179526 lncRNA downstream 206269 16286122 ~ 16286403 (-) True G121507
TU179466 lncRNA downstream 589021 15829484 ~ 15903651 (-) False LOC122362005
TU179726 lncRNA upstream 35897 16549255 ~ 16550184 (-) True G121644
TU179680 lncRNA upstream 304248 16817606 ~ 16893398 (-) True G121609
TU179814 lncRNA upstream 619160 17132518 ~ 17132726 (-) True G121715
TU179810 lncRNA upstream 623512 17136870 ~ 17149028 (-) True G121711
TU179816 lncRNA upstream 637154 17150512 ~ 17157229 (-) True G121717
XM_043263475.1 mRNA downstream 23193 16466633 ~ 16469479 (-) True prph2la
XM_043262547.1 mRNA downstream 52326 16438230 ~ 16440346 (-) True gpr132a
XM_043263248.1 mRNA downstream 285058 16118122 ~ 16207614 (-) True LOC122362009
XM_043263313.1 mRNA downstream 491961 15952582 ~ 16000711 (-) True LOC122362058
XM_043263241.1 mRNA downstream 541234 15901701 ~ 15951438 (-) True LOC122362005
XM_043262144.1 mRNA upstream 349039 16862397 ~ 16870032 (-) True LOC122361412
XM_043263554.1 mRNA upstream 388525 16901883 ~ 16912407 (-) False ttc8
XM_043263553.1 mRNA upstream 388525 16901883 ~ 16912407 (-) True ttc8
XM_043263555.1 mRNA upstream 388525 16901883 ~ 16911970 (-) False ttc8
XM_043263408.1 mRNA upstream 447350 16960708 ~ 16969331 (-) True LOC122362116
TU179448 other downstream 752186 15738262 ~ 15740486 (-) True G121456
TU179430 other downstream 802878 15688891 ~ 15689794 (-) True G121438
TU179418 other downstream 805724 15685539 ~ 15686948 (-) False LOC122361708
TU179062 other downstream 1392748 15083818 ~ 15099924 (-) True crip2
XR_006253025.1 other downstream 1466257 15010826 ~ 15026415 (-) False ptgr2
TU180175 other upstream 1448931 17962289 ~ 17963965 (-) False acyp1
TU180176 other upstream 1448931 17962289 ~ 17963965 (-) False acyp1
TU180335 other upstream 1766107 18279465 ~ 18281572 (-) False LOC122361613
TU180588 other upstream 2117899 18631257 ~ 18644980 (-) False LOC122361943
TU180607 other upstream 2273524 18786882 ~ 18790880 (-) True G122247

Expression Profile