RNA id: XM_043263336.1


Basic Information

Item Value
RNA id XM_043263336.1
length 4897
RNA type mRNA
GC content 0.49
exon number 7
gene id esrrb
representative False

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 17637590 ~ 17690815 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aattgtaaaatattctAACAAtgtaaattttcagcatcattcctccagtcacacgatccttcagaaatcattctaatatgttcaacaaacatttctgattattattgttatggaAACCATGAATTATCTTACTGACCACAAAGTTAATGTTCAAGTGGTTTtacctgaagacatggatctgTTCGTTTGAGAAGCACAAAGAGTCAAATTCTGTCAACCAATCATGAGAGGCAGGGGGCGGGACTTGCTGTTGAGTGACAGGTAGAGTGTTAGGAAAAGCCTTCTGTTGTATGTACAGTTCAGTTTTGCCGCAGAAAAGCACAATTTGCCTtcagtattttagttttttacatggTTTGTGAGTTGAAGGTAGAATATTCGTGCACAGTGTTTGAGTGACTGCATCAACGAGAGTGTTTTAGATCAGAGCTTGCAATCACTCAGCCGTTCCACATTGACATCTGTCTAATATTACTAGCTGGTCTCAAAATACTGTTCACCGGACACACCAGGAAATAAGGACTAAAGGTTGATAAGTTTAGTTATTTATGTGCTTCTGTATTCAGCTCGCCTCGGTCTGTGGGAAGGTAACTGTGGCTCAGGCTGACCCGAGGACCTGAGGACGTTACAGTGGAAACCCGCTGCGCTCGTGAAGgctgCTGAACAGAATGGCTGCTGAGGAGCGGCACATGACGTCCAGCTGTGGCTCCTACATCAAGACAGAGCCCTCCAGTCCGTCCTCTCTGGTGGACACGGCCAGCCACCCCAGTCCCGGCGCGCATTCGGACGCTAGCGGAGGCTACGGCAGCGCCATCAACAGCCACTCCAACGGCCTAGACTCTCCGCCAATGTTCACGGCGGGCGGGCCGCTGAGCGCCGCGGGGAGCGCCTGCCGCAAGCGCTATGAGGACTGTTCCAGCACGTTACTGGAGGACCCCGGCTCCATCAAGTGCGAATACATGCTCAACTCCATCCCAAAACGCCTGTGCCTGGTGTGCGGAGACATCGCGTCGGGGTATCACTACGGCGTGGCCTCCTGTGAAGCCTGCAAGGCCTTCTTCAAAAGAACAATACAAGGTAACATCGAGTACAGCTGTCCGGCCACCAATGAGTGCGAGATCACCAAAAGAAGACGCAAGTCCTGCCAGGCGTGCCGCTTCATGAAGTGCTTGAAAGTGGGCATGCTGAAGGAAGGTGTTCGGCTAGATCGTGTACGAGGAGGCCGACAGAAATACAAGAGGAGAATGGATGCAGAAAACACAGCCTACCTGGGGCTCACACTGCCACCGCCAGCCAAAAAACCCtTGACGAAGATCGTGTCTCATCTGCTGGTAGCGGAGCCAGAGAAGATCTACGCCATGCCGGACCCCACCATGCCCGAGAGCGACATCAAAGCCCTGACCACGCTGTGTGACCTGGCCGACCGCGAGCTGGTGGTCATCATCGGCTGGGCCAAACACATCCCAGGTTTCTCCAGCCTGTCTCTGGGAGATCAGATGAGTCTGCTGCAGAGCGCGTGGATGGAGATCCTGATCCTGAGCATCGTGTTCCGCTCGCTGCCCTACGAGGACGAGCTGGTGTACGCCGAGGACTACGTGATGGACGAGGAGCACTCGCGGCTCACCGGCCTGCTGGACCTCTACGTGTCCATCCTACAGCTGGTGCGCAAGTACAAGAAACTCAAGGTGGAGAAGGAGGAGTTCGTCACGCTGAAGGCCATCGCACTCGCCAACTCAGACTCCATGCACATCGAGGACGTGGAGTCGGTGCAGAAGCTCCAGGACGCCCTGCACGAAGCGCTGCAGGACTACGAGGGCTGTCAGCACGCAGAAGACCCTCGGCGGGCCGGGAAGCTGCTCATGACGCTGCCCCTGCTCCGGCAGACGGCCACCAAAGCCATCCAGCACTTCTACAGCATCAAGATGCAGGGCAAGGTGCCCATGCACAAACTCTTCCTGGAAATGCTGGAGGCCAAGGTCTGATTGGCCGCTCGCCGCGTGACATCATCGGGGCCAGAGACTGCGGAGGTCAGCCGCGTGGGCTGCGGGACGCTCGTCTCTCGTCGGGACGTTTTTAAagacctgaaaaaaaaagataacttggtttaaagcataaatataaatggaaaaataatttaaaaatctataacAAATACTATGTACTTGTACAGTAATGCTTTTCGTTCTTGATCTGTGCTTATATATGATGGAAGAAACTGTAAGTCATTTCAGAGTGAGTAGTCATTTCTTTGGTTCCGCTATCCCTCCGTGTTTGTCGCCAACGACCTCGGCCCGGCCCTCGGACGACGCCAGGACACCTCGAGGACTTGTAAATATTCATGGCGGGATTCGGCCGAGGCTGGACGTGGAAGCTGCTGCCGGTTCTTCCCTAAATGTGAACTCTTGCTGACGTCCTTGAAAATACCTCTTCTTGACTCCCGGGAGGACGGCGTTTGTGCCACGCTCCTCCGGGACCTCAGTCATCTTACTCTAGTAACTCAGCAATAAATCGAGCCGACGAGGAGCGCCCACCTCTTGTGTTGCACTGTACTGCTTTTTTAAACTACTTGTTATTGTTGTCGTCGTCGGTGTTTGGGCCTAAGTGTAGTCGGCGGGTGGAGGGATGGAGGATTTACGATGCGTGGCAGACGTCCAGGATGCTCCGTGTTCAAACAATCAGACGCCCGTATGTCAAGCGGCCTATTTCGGGCTTGTTAAGCCACCGGCGGAGGAAACGAGGTGTTTCTGCTCGGACCCTGCCAGGACTTTTATAGCCATGTATCTGAATGAAGGTGGGCGGCAGGTGCGGGTCTTTATCACCAGCTTTATTTTTAGGTCTTGGAAGTCGACAGCAGAGTGAGCAGGAGGGGTGTTTGACCTCATGTTGACACAATAGCATCGCTTCGAAAATGGCCTTCAAACTCGCCGGCCCTATAAACAGCTTATTACCCTTAGATCCACTTGACAGCAGACCGCCGTACGGCTCTTAGTCCCGAGTTATCTGTTAGCAATATCCCGCACCCGAGAGGCATTAGCGGTGAAAAGAACCGAAGTCATTTGCTTGACGTCAAACGTATAATATATCATGAAGGACCTGAGGGTTTGACTGAATCTTGGGGTGCGTTTCCCAAAACCGGCCAGTCTCGTTGCCGACATAGTTAGCGATTCGGTTGCTGTGTTTCCATCCAAAATTGGGATATCGCACATTTGTGAATAAAGCATCCAGGGAGCGCTATCGTCGCTGTTCTTGATTAACTTGTGCTAAATATCATCAAGAAGTTTTTCATTCGCCGTGATAGGAAAAGGCAATGCACGTAATCGTTTTTTTGTGAACAAGGTGCGCTCATGTTATCTTATTTTCGAGGCCGTTGTTTAGGAACGCAGATCAGGGAGTTGATTATAAGGAAGCACTTTGATGAGACTACAAGGcattaataattttagaatGACTAAATTAGCGTTTCGGATTCTGGGCAATGAGATCTGAGCAGTTATGCTGTCCCTTCGCAAAGTCGCGTCTTTTTTTATGCGCATTTATTCGGCCAAAGTGTTTCTATTGTGAGTGTTGAGCGCATATGCTTTTTATGTCCATTTTTACAATTCATGCCCCTCTtggcatttgtgtttttttaaagcggTATCCCAAAATGCGCACCAGTATAggtggatggaaacatagcCGCTGTTCGTTGAAACCAAACGTCCCGTGTGGTCGAAAGTGCGACTTTGGAACGGATCGTGCTCAATTTGCACATGAAGCAAAAAACCTGCAGCACATTCTTTTAAATCAATCGAGTGCTGCAGCTGGGACGTCAAAGGCTTCAGAATGAGGTTTTCTTTCGTTGTGTTTTTAGTTCACGATACTTGGACGTTTAGTTCCCCGGTGTTACTGCACACACTGTAAGTAAGTTCATTTTAGGTGTGTGTGATTTACATTGTAGAGCAAAACGCCCAAGTATGGTcaattgaaatgaatgaaattagcAATAAAAGGTCCATTGTCAAACCAGAGATCAGTTCATTAATGACAGGTCTACAACAGGTGGAAACAGTGACTAGTTAGTTATATTGCTCTAGGGTATTAACCAGCGAGATCTGTCATATGGGAAACCAACCCCAGGTCCGATCTCTCTCTCAATCATCGCTGATGTCTCTCATTGGCTTCACAATTGCCAGACACTTCCCAGAAAACTTGAACCCACCACAATCTCTCCCCGAGCGGACGAGATAGCCAGAGAGAAGATAATACAGGGATTCATTTTACATGCAGCGCAACTGTGTGGACTCACATTAGGGATCAGTTCTGACCAAACCATGCCCGTGTGAATGCAAACGCTTCGAGCTAATGCTTCAGAACCCGACTCAGTCGCATCCGTTAGACACACGCTAATGAACATATATGCAACATTCACGTAGCTACCTCATCGTTCATCCTGTAAATACTGCCCTTTCTTTAGCCTCTTCCTCTCACGCCCACAACGTCTGATAAAGCTAGAGAACTAGGTTAACTTCTCACACACCACACTAACCACCAAAGCACACTTCTCTCTCCCCACGTCCTGTCTGGTGCACTGATCCAGGtgctttttttctacttttttgacAACGGGACACTTGGTCGCATTCATCATCTAGCCTACCCGAAACCCCACGAAGGAGCGAGTGGCGTGAATGTTGATCAGTGCCTCTCCGTTCAGTGTTTAGGAGGGAAAAGATGCATATCTGTGAAGGCcgttgtttctttcttttctgtggaCCGCAGCATGTCGGGGTCAGAACTGCTCCCTCAATGTTCAAAATGACGCCGGTTTTTTGTGTTTCTCCTCCAGATACTCATTGTGTATATTATATCACTTTGGCCACGCTGTACTGTACAATAATATTGTTCATTTAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180034 lncRNA downstream 16919 17620220 ~ 17620671 (-) True G121854
TU179930 lncRNA downstream 35291 17353412 ~ 17602299 (-) True G121799
TU180032 lncRNA downstream 54001 17582903 ~ 17583589 (-) True G121852
TU179834 lncRNA downstream 422312 17215055 ~ 17215278 (-) True G121734
TU179821 lncRNA downstream 427330 17168223 ~ 17210260 (-) True G121721
TU180107 lncRNA upstream 107853 17790942 ~ 17810401 (-) True G121905
TU180177 lncRNA upstream 279200 17962289 ~ 17963965 (-) False acyp1
TU180178 lncRNA upstream 279200 17962289 ~ 17963965 (-) True acyp1
TU180186 lncRNA upstream 305689 17988778 ~ 17989008 (-) False LOC122361562
TU180191 lncRNA upstream 322185 18005274 ~ 18005603 (-) True G121965
XM_043263051.1 mRNA downstream 78427 17543830 ~ 17559163 (-) True dlst
XM_043263743.1 mRNA downstream 108779 17522974 ~ 17528811 (-) True LOC122362317
XM_043262328.1 mRNA downstream 132541 17465870 ~ 17505049 (-) True angel1
XM_043262329.1 mRNA downstream 132541 17466758 ~ 17505049 (-) False angel1
XM_043262316.1 mRNA downstream 361050 17216049 ~ 17276540 (-) True cdin1
XM_043262799.1 mRNA upstream 109124 17792213 ~ 17808157 (-) True LOC122361798
XM_043263792.1 mRNA upstream 150233 17833322 ~ 17911030 (-) False ttll5
XM_043263793.1 mRNA upstream 150233 17833322 ~ 17911030 (-) False ttll5
XM_043263791.1 mRNA upstream 150233 17833322 ~ 17911030 (-) True ttll5
XM_043263794.1 mRNA upstream 150233 17833322 ~ 17907965 (-) False ttll5
TU179448 other downstream 1897104 15738262 ~ 15740486 (-) True G121456
TU179430 other downstream 1947796 15688891 ~ 15689794 (-) True G121438
TU179418 other downstream 1950642 15685539 ~ 15686948 (-) False LOC122361708
TU179062 other downstream 2537666 15083818 ~ 15099924 (-) True crip2
XR_006253025.1 other downstream 2611175 15010826 ~ 15026415 (-) False ptgr2
TU180175 other upstream 279200 17962289 ~ 17963965 (-) False acyp1
TU180176 other upstream 279200 17962289 ~ 17963965 (-) False acyp1
TU180335 other upstream 596376 18279465 ~ 18281572 (-) False LOC122361613
TU180588 other upstream 948168 18631257 ~ 18644980 (-) False LOC122361943
TU180607 other upstream 1103793 18786882 ~ 18790880 (-) True G122247

Expression Profile