RNA id: TCONS_00009856


Basic Information

Item Value
RNA id TCONS_00009856
length 1050
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_005060
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1368645 ~ 1370372 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTAGAACAGCTCAGTCGAAGAGAGAATGTGATTGTTGGAGGAGATAAGAGGGCTGACTCCCCAGGTCACTCGGCCAAGTATGGGAGTTATACAATGATGGACCTTGCAACTAACACAGTGGTCGACCTAAAGTTAGTCCAGagTAATGAGGTGGGCGGCAGTTACCATATGGAAAAAGAAGGCCTAAAGAGAAGCCTAGACCTGTTGGATGCCCGCGGTGTTCGTCTGGAATGCATCATCACAGACCGACATCCTCAAATACAGAAATATCTCAGGGATCGAAATGTCACTCAGTTTTACGATGTGTGGCATATCGAGAAAGGAATTTCCAAAAAACTGGACAAGATATGCCAGATAAAGGGGTGTGAGAAGTTGCGTAAATGGTTGCGTAGCATCAAAAACCACATCTACTGGACTGCTGCATCATCCACAACAGGTCCTGAAAGAGTGGCAAAGTGGACCTCTATCTTAAACCATGTACATGAAGACCCCAATTTTCCGGCTTATCTGCATCCGCAACGGATAAGCAGAGACAAGAACAAATGGCTGTCGGCTGCAACGATGCCATTCTACAAGCTGGAGAAAGTTCTCGCTAACAAGAGAATATTGAAGGATGTGGCCAAGCTAAGTCCTCACCACCAGACGTCAACTGTTGAAGCTTTCCACAGCGTCCTACTGCGGTTTGCACCCAAAAATGTGGTATTCCCATTTCTGGGGATGCTATGCAGgtTGTACTTGGCTGCACTGCATTACAATGAAAATGCCGGGCGTCCCCAGGCCACATCAGCAACTGGTAAACCTATTTACAAGCTTGCCTTTCCAAAGGCAAAGAAAGGAGAGTATAGGGTCCGAAAAGTGAAGACGCAGCAAACTTTCgGTTATGTAAAAGAGCTGCTGGACCTCATCTTCAACCAAGTGTTTGTGGACCCATCACCCTATGTTGATGAAGTGTTGGGAATTCACATACCACCTGCTCTATCATCAGCCTGCGATCTACCTGAGATGGAGGAGGCTATCTCCAGCAGGGTGACCCGCTTCAATCAATAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000185476

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011055 lncRNA downstream 291531 1072485 ~ 1077114 (-) False XLOC_005057
TCONS_00009849 lncRNA downstream 368909 995830 ~ 999736 (-) True XLOC_005055
TCONS_00009826 lncRNA downstream 904656 461129 ~ 463989 (-) True XLOC_005045
TCONS_00011054 lncRNA downstream 960014 406187 ~ 408631 (-) True XLOC_005043
TCONS_00011053 lncRNA downstream 1013090 337808 ~ 355555 (-) True XLOC_005042
TCONS_00011056 lncRNA upstream 82528 1452900 ~ 1453339 (-) True XLOC_005062
TCONS_00011057 lncRNA upstream 629647 2000019 ~ 2001490 (-) True XLOC_005067
TCONS_00011058 lncRNA upstream 630264 2000636 ~ 2001824 (-) True XLOC_005068
TCONS_00011059 lncRNA upstream 697591 2067963 ~ 2073187 (-) False XLOC_005069
TCONS_00010789 lncRNA upstream 697740 2068112 ~ 2073187 (-) False XLOC_005069
TCONS_00009855 mRNA downstream 7128 1349418 ~ 1361517 (-) True XLOC_005059
TCONS_00009854 mRNA downstream 23083 1338341 ~ 1345562 (-) True XLOC_005058
TCONS_00009853 mRNA downstream 283418 1072486 ~ 1085227 (-) True XLOC_005057
TCONS_00009850 mRNA downstream 334185 1014418 ~ 1034460 (-) False XLOC_005056
TCONS_00009857 mRNA upstream 33434 1403806 ~ 1406480 (-) False XLOC_005061
TCONS_00009858 mRNA upstream 33603 1403975 ~ 1405228 (-) True XLOC_005061
TCONS_00009860 mRNA upstream 185775 1556147 ~ 1557286 (-) True XLOC_005064
TCONS_00009861 mRNA upstream 322642 1693014 ~ 1694053 (-) True XLOC_005065
TCONS_00009862 mRNA upstream 577221 1947593 ~ 1951233 (-) False XLOC_005066
TCONS_00009831 other downstream 746356 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009859 other upstream 120100 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009912 other upstream 2915994 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 2925177 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 2927485 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 2927855 4298227 ~ 4301376 (-) True XLOC_005113

Expression Profile

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