RNA id: TCONS_00009857


Basic Information

Item Value
RNA id TCONS_00009857
length 971
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_005061
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1403806 ~ 1406480 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTGATGATGAGTCGATTTAATACTTGAGTTACAAAAGACACCGAAATttagatataaatattattaatacactTCTATCGTGACGTCGTTAATATAGTGACGCAGACGCGCGTTGATGACGTGAGGTTCTCCGTGAAAACATGGCGGCTGCCGTACCGGTGGTGGAGGAGGCTGAAGATTATTCCTTTTTGCCAATTATTCACGACGTCATAAAATGCATGGATAAAGACAGTCCAGACGTCCATCAGGAGCTCAACAAGCTGAAGACGAAGATCCAGGAGGCCCGCGAGCAGATCTCCAGCATGCCAGGCATCGACATGAGTCCAGCGGTGCAGGAGAGCAAACTGCAAACGCTCCGAGAACAGGTCCAGACCAAGAACCAGCTCCTGCAGAAATACAAGAGCCTGTGCATGTTTGACATCCCTAAACCATCCTGATGTCCAGCATGAACCGGCAGAGTTTAATGTCATGACACTCTCTCACCAACGGGGGcgacactcactcactcacatctGCTGCATGGATTTGTTTTGTACATATCATTTGCTTTTTCTTTGGACAGTATTCAAATCAGTGTGTGCTTTTTGTATACTTTACATTTGTGCATTAAATTTATAAAACCACATATTTGATAAAAGTTCAGTTGCATTtaacacatgaaaaaaaatactagtgtttttgaagcatactacactgtcagaaataatCTGTCAATGTGGCATTTTTGTCtctaaaggtacatattaataacTAAAAAGTGCAAATGTGCATCTTAAAGATACAAAAGTAAACCTTTTTTGTAAATATCATTCACTTTTACTTTGGACATCACATTCGGACTTTTGCTTTgtgcattaaattaattaaagcacCTTTTAAATAGAGGTTGTTAGTTGCATTTTCATAGTGTTTTTCAGGCATACTTAGTCAAATGTATtataccagtggttcccaacctttttttttttg

Function

GO: NA

KEGG:

id description
ko03021 Transcription machinery

Ensembl:

ensembl_id ENSDART00000152308

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011055 lncRNA downstream 326692 1072485 ~ 1077114 (-) False XLOC_005057
TCONS_00009849 lncRNA downstream 404070 995830 ~ 999736 (-) True XLOC_005055
TCONS_00009826 lncRNA downstream 939817 461129 ~ 463989 (-) True XLOC_005045
TCONS_00011054 lncRNA downstream 995175 406187 ~ 408631 (-) True XLOC_005043
TCONS_00011053 lncRNA downstream 1048251 337808 ~ 355555 (-) True XLOC_005042
TCONS_00011056 lncRNA upstream 46420 1452900 ~ 1453339 (-) True XLOC_005062
TCONS_00011057 lncRNA upstream 593539 2000019 ~ 2001490 (-) True XLOC_005067
TCONS_00011058 lncRNA upstream 594156 2000636 ~ 2001824 (-) True XLOC_005068
TCONS_00011059 lncRNA upstream 661483 2067963 ~ 2073187 (-) False XLOC_005069
TCONS_00010789 lncRNA upstream 661632 2068112 ~ 2073187 (-) False XLOC_005069
TCONS_00009856 mRNA downstream 33434 1368645 ~ 1370372 (-) True XLOC_005060
TCONS_00009855 mRNA downstream 42289 1349418 ~ 1361517 (-) True XLOC_005059
TCONS_00009854 mRNA downstream 58244 1338341 ~ 1345562 (-) True XLOC_005058
TCONS_00009853 mRNA downstream 318579 1072486 ~ 1085227 (-) True XLOC_005057
TCONS_00009852 mRNA downstream 369423 1028580 ~ 1034383 (-) True XLOC_005056
TCONS_00009860 mRNA upstream 149667 1556147 ~ 1557286 (-) True XLOC_005064
TCONS_00009861 mRNA upstream 286534 1693014 ~ 1694053 (-) True XLOC_005065
TCONS_00009862 mRNA upstream 541113 1947593 ~ 1951233 (-) False XLOC_005066
TCONS_00009863 mRNA upstream 541402 1947882 ~ 1951284 (-) True XLOC_005066
TCONS_00009865 mRNA upstream 1099039 2505519 ~ 2522487 (-) False XLOC_005070
TCONS_00009831 other downstream 781517 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009859 other upstream 83992 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009912 other upstream 2879886 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 2889069 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 2891377 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 2891747 4298227 ~ 4301376 (-) True XLOC_005113

Expression Profile

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