RNA id: XM_043263555.1


Basic Information

Item Value
RNA id XM_043263555.1
length 2612
RNA type mRNA
GC content 0.45
exon number 14
gene id ttc8
representative False

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 16901883 ~ 16912407 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGGTACTTGTCATGTTTCTGAGGCGGCGTGGAGCTTGAAGACGAGAGCTCTGACGGAGATGGTGTACATTGATGAGGTGGAGGTGGATCAGGAAGGCATCGCTGATATGATGTTGGACGAGAGCTCCATCGCTCAGGTGGCACGTCCAGGAACATCACTGAGGCTCCCAGGAACGAGTCAGGGAGGAGCGCCCACTCCAGCGGTCAGGCCGATGACCCAGTCAGGGCGTCCCATCACAGGGTTTGTGAGGCCCAGCACTCTCTCTGGTAGACCAGAAACTATGGAGCAGGCCATCAGAACGCCCCGCACGGCCAGCACGGCCCGACCCGTCACCAGTGCTTCCGGCAGATTTGTCAGGATGGGAACGGCTTCCATGCTCACAAATCCAGATGGACCATTCATTAATCTGTCTAGGTTAAACTTGGCAAAGTATGCCAAGAGACCGAACTTGTCCAAGACCTTGTTTGAATACGTCTTCCATCATGAAAACgatgtaaaaaatGCATTAGATCTGGCTGCTCTTGCCACAGAACATGCTCAGTTCAAAGACTGGTGGTGGAAAGTACAGCTGGGAAAATGCTATTACAGATTAGGTTTGCACCGTGAAGCCGAGAAGCAGTTCAGATCAGCGCTCGCACACCAAGAATTTGTTGATACTCACCTCTACCTCGCAAAGGTGTATCAGCGGCTCGATCAGCCCATCACCGCTCTGAATGTGTTCAAGCAAGGCTTGGATCACTTCCCTGCCGAGGTCACGCTGCTCACGGGAATCGCGCGCATTCATGAGGAAATGAATAACATGACCTCAGCCACAGAATACTATAAAGAAGTATTAAAGCAGGACAACACACACGTGGAGGCCATTGCCTGTATTGGCAGTAATCATTTTTACACAGACCAGCCAGAGATTGCCCTGCGCTTCTACAgGCGTTTGCTGCAGATGGGGGTGTTCAACTGCCAGCTCTATAACAATCTAGGCCTGTGCTGTTTCTACGCTCAGCAGTATGATATGACCCTGTCGTCCTTTGAGAGAGCTTTAGCCCTGGTGTCCAGTGATGAGGAACAGGCCGATATCTGGTATAATCTGGGACACGTTGCAGTGGGCATTGGTGACTTGACTCTGGCTTACCAATGCTTTAAACTGGCTTTGGCTTTTAACAATAACCACGGTGAAGCTTACAATAACTTGGCCGTGTTGGAGCTACGGAAAGGCCGCATCGAGCAGGCGAAAGCTTTTCTGCAGACGGCTGCTTCTTTGTCTCCTCACATGTATGAGCCGCATTTTAACTTTGCCACGCTCTCTGATAAGGTGGGCGATCTTCAGAGTAGCTACATGGCCGCTCAGAAGTCTGAGGATGCGTTTCCTGAGCATGTGGACACTCAGCAGATCCTGAAAAACCTCAGACAGCATTTTGCCACCCTATGAGACGTCTCAACAGTTATCACTGTTTAGGCATAAAAATGACCTGCAAGGATTGTAGTTATATGtagatatatgtatgtatagacATACTCTTCCTGACATTGCCCGATTATAATTTGTATGCTTAATAATATAAaggattgtaaaaaaaaaaaaaaaaagccttttttttttttttttttttttttttactgtttaatgttACACAGCTCCAGCCCACTCCACTGTGGGTCCTTTTGATGAATTACAGGAAGTGCAGCTACTACTAAAATCTCAAAAtgctcttttaattttaatttcagttaactGCTGAAAGTATGGGGTAGCAGTGCACACATCCAGTGTTCATATCGATTTCATTTTAAGATTACTTTGAACTTAATGGAAATACATACTAGTAAACATGAATGGTGGACACCTAAGCTTCCACGAAGTGTGGTTAAAAACTCTATACCCATTGTTGCAAACTGTCACAACTCtcacaaaactaataaaacgcCTGCATCTTTGTAAACATGCCCAAAACTTAGGGTAGTCTAATCAAAGTTTTTGAGGCTAATAGTGATCTTTTTAAAGGTTTCTTTACATCATGTAGAATTATTTATAGTGATACCTCAATCAGTATTTTAGGCAATTCAGTTGTTGTATGCTGAGTAAGAAGCACTAATTGGAACACTTATAACCCTCATGAGACTGCTGGGCATTTAAACCTAAGTACTGAACAGATTTAAGCCAGCTTATTACTACAAATCACACAAGCACACCTAGTCAAAAAAAGACAGCAGGCATGCTTgcatctctgtgtgtttctgtgtttgataCAGTGGATAAAGACAGGAGTGGAGGCCTTTTTGCAGGCAATTAAGTTGCTGTATGCTAAGTAAAGAGGAAGAAACGGTTCTCTGGCATTTAaaagagggagaggagaagaaaagagGTCGTCGAGGGCAGGATTCAATGTCAGGCTTATCGCGGCAAAAGGGATCGAGGCGTGCGCACAGCATGCACCACAGGAGACGACAGTCGAGAGATATCCTGTAGTCCTGTAGCACACTCCGCACGATAGCATCGACGCAAACCAGGCATTTAAATTTCTTTCAAAGTCACGATGTTCAAATTGGACCACTTGTACAGCAAAGAACGCTCTGCGCGCAAAAaattaccaaataaaaaaaaatacgaaaACA

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0060026 convergent extension biological_process
GO:0001947 heart looping biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179680 lncRNA downstream 8485 16817606 ~ 16893398 (-) True G121609
TU179726 lncRNA downstream 351699 16549255 ~ 16550184 (-) True G121644
TU179720 lncRNA downstream 417914 16482647 ~ 16483969 (-) True G121639
TU179528 lncRNA downstream 567444 16334043 ~ 16334439 (-) True G121509
TU179526 lncRNA downstream 615480 16286122 ~ 16286403 (-) True G121507
TU179814 lncRNA upstream 220548 17132518 ~ 17132726 (-) True G121715
TU179810 lncRNA upstream 224900 17136870 ~ 17149028 (-) True G121711
TU179816 lncRNA upstream 238542 17150512 ~ 17157229 (-) True G121717
TU179821 lncRNA upstream 256253 17168223 ~ 17210260 (-) True G121721
TU179834 lncRNA upstream 303085 17215055 ~ 17215278 (-) True G121734
XM_043262144.1 mRNA downstream 31851 16862397 ~ 16870032 (-) True LOC122361412
XM_043263168.1 mRNA downstream 388524 16495172 ~ 16513359 (-) False c17h14orf180
XM_043263167.1 mRNA downstream 388525 16492672 ~ 16513358 (-) False c17h14orf180
XM_043263166.1 mRNA downstream 388525 16492672 ~ 16513358 (-) True c17h14orf180
XM_043263475.1 mRNA downstream 432404 16466633 ~ 16469479 (-) True prph2la
XM_043263408.1 mRNA upstream 48738 16960708 ~ 16969331 (-) True LOC122362116
XM_043263879.1 mRNA upstream 66568 16978538 ~ 16986104 (-) True asb2b
XM_043263880.1 mRNA upstream 67523 16979493 ~ 16986105 (-) False asb2b
XM_043262637.1 mRNA upstream 80267 16992237 ~ 16999850 (-) True ddx24
XM_043262638.1 mRNA upstream 89591 17001561 ~ 17004658 (-) True serpina10b
TU179448 other downstream 1161397 15738262 ~ 15740486 (-) True G121456
TU179430 other downstream 1212089 15688891 ~ 15689794 (-) True G121438
TU179418 other downstream 1214935 15685539 ~ 15686948 (-) False LOC122361708
TU179062 other downstream 1801959 15083818 ~ 15099924 (-) True crip2
XR_006253025.1 other downstream 1875468 15010826 ~ 15026415 (-) False ptgr2
TU180175 other upstream 1050319 17962289 ~ 17963965 (-) False acyp1
TU180176 other upstream 1050319 17962289 ~ 17963965 (-) False acyp1
TU180335 other upstream 1367495 18279465 ~ 18281572 (-) False LOC122361613
TU180588 other upstream 1719287 18631257 ~ 18644980 (-) False LOC122361943
TU180607 other upstream 1874912 18786882 ~ 18790880 (-) True G122247

Expression Profile