RNA id: XR_006253087.1


Basic Information

Item Value
RNA id XR_006253087.1
length 1978
RNA type transcript
GC content 0.53
exon number 8
gene id evla
representative False

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 11915468 ~ 11944728 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctccctcttttctctctcacacacttctTGTTCTCAGGAATGAGTGTGCTCTGTGTTTTACCTAGCTGAAAGGATGAGGGATGAACTAGGCAGAGTATATTTTTTCTCTGATCCCCCCTCCTATTCCCTGTTTTCTTTTCGTTTCATCCGGCTGTGAGGAATTTTCTTTCTCCTTGGTGTCTACAGAGCTTCAACTTCCCGATATGTATTCTTTTGATGACTATGGTGAACAGAGTATATGTCAAGCCCGAGCCTCTGTGATGATCTATGATGACACCAGCAAAAAATGGGTGCCAGTCAAACCGGGCCAGCAGGGCTTTAGCCGCatcaacatctaccacaacactGTCAACAACAGCTTCCGTGTGGTGGGAGTCAAACTGCAGGACCAGCAGGTCGTTATAAACTACTCCATTGTGAAAGGTCTGAAATATAACCAGGCCACTCCAACTTTCCACCAATGGCGTGATGCGCGGCAGGTTTACGGACTGAACTTTGCCAGCAAAGAGGAGGCCACCACCTTCTCGACTGCCATGCTGTTTGCGCTCAATGTCCTGAGCTCTCAGGATGCAGGTCCAGGAGCACATCGTCAGAATGGACCGGTGACAGATGATGGCGAGGCTCAGAGGAGGCAAATGATGGACCAGCATCAGATGCAGATGGAAAGGGAACGACGAACATCTGGCTCCGCAGtCTCCACCCTTCAGTTTAAAGTATCAGCATCTGCCTCTCAGTCCGAAACCACTCTGCATGACCTCAGACAGTATCGGGCTAACACTCTTCCCCCTTCCTATGCTCACATTAACCCCGCTCAGCCCTCCTCCCACACCTCGTCTTCCTCCCAGGAGCGAGAGAGTGGCTACCGCACTATGGACTCCCCTCAAAAAAAGGCACAGCAGCTTTCTCAGCTTTCCACCTCTCTGGCTTCTGCTTTCTCCCCTGTGCAGCCGGGTGTCACCCCTCCACCTCGCAACATCAAGCAAATCCCTCTTTCCCCTCCAACGGCCCACCAGGACCCCAAACACGCCACATGGTCCTCCGCCCACATGTACGCCCCATTACCCACAGCATCGCCACCCGTCATAATGGCGGTGCCAATCAAACAGCCCAACCTGCCTGTCGCCCTCCCCTTGCCACCCCTAAACAACGGCCCAAACTGTGGCCCCAAAGCTCCCGCTAACCTGTCCCACTTGGAGCCTGTAACACACCACCAACCGTCGTCCAGTGGTCCGGCAGAGGAGTACTGCCAGTACCAAAACCCTCCTACGCAGGTCTCCTCTGGAGCTCCACTGCACCCACATTATCCCATACAAGAATCATCTTGCCCCCTGCCCCTTCTCATTGGCCAGCCCATCCAAGGCCCCGCCCTCCACCAGCAGCAGCTATACCAGGCCACGCCCCAATTCAACACCACACCCACCTCTCACTCTGCTCTGTGCGAGGGGGCAATGCCCAAGACGTCTCCCTCGCCTGTTTATCAGAATGCCACAGCGTCCAGCAATCATATTTTCTAagttaaaatggttttatgtaGATGCATATGTAAGCAGGGCTCAATACTAAGGATGGCCTGCTGACCCAGGACCAGTGTGAGAGGACTTTGGGCCACCTGACAGACCAATGTCATTTGTCCTTTTTTGTTGCGCCATTCAACGTTCATTGATCTCGTACATCTACTTTGCAAATTTTAATGCTTGGCTTTCTGTGATGTATTATTATGCAAACTCTGCTGATTTGTCTCCAAGATAATTTTATCTAGCTGGCTGACATGAATGAGGTTTTGTCAAATTTGCAAATACACCCCGGGGGCATCAATAAGTATGTGTTGAAAACTACAAACCAAAACAGGTCCTCCTGTTCCGCCGGGTCATCCCTCCATGCTCTCATCTGCTCCTCCTGTTCACCCCCCTACCTCAGCATGTATGGCGGGTCCACCGGCCCCTCCGCCCCCTCCTGGGCCACCCCCACCCGGGCCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177900 lncRNA downstream 28179 11889841 ~ 11890111 (-) True G120417
TU177899 lncRNA downstream 28852 11889069 ~ 11889438 (-) True G120416
TU177898 lncRNA downstream 29913 11888139 ~ 11888377 (-) True G120415
TU177887 lncRNA downstream 87639 11830269 ~ 11830651 (-) True G120404
TU177886 lncRNA downstream 88524 11829347 ~ 11829766 (-) True G120403
TU177966 lncRNA upstream 156498 12097511 ~ 12098153 (-) True G120458
TU177968 lncRNA upstream 161334 12102347 ~ 12103384 (-) True G120460
TU177971 lncRNA upstream 182271 12123284 ~ 12125963 (-) True G120463
TU177973 lncRNA upstream 190021 12131034 ~ 12132207 (-) True G120465
TU177972 lncRNA upstream 192926 12133939 ~ 12136814 (-) True G120464
XM_043262630.1 mRNA downstream 9352 11904972 ~ 11908938 (-) True yy1a
XM_043263622.1 mRNA downstream 21978 11892101 ~ 11896312 (-) True gdf7
XM_043262279.1 mRNA downstream 97676 11818442 ~ 11820614 (-) True c17h1orf115
XM_043262366.1 mRNA downstream 113505 11800488 ~ 11804785 (-) False alkal2b
XM_043262365.1 mRNA downstream 113509 11800490 ~ 11804781 (-) True alkal2b
XM_043263669.1 mRNA upstream 4150 11945163 ~ 11993090 (-) False eml1
XM_043263671.1 mRNA upstream 4150 11945163 ~ 11993090 (-) False eml1
XM_043263665.1 mRNA upstream 4150 11945163 ~ 11993090 (-) False eml1
XM_043263664.1 mRNA upstream 4150 11945163 ~ 11993090 (-) False eml1
XM_043263663.1 mRNA upstream 4150 11945163 ~ 11993090 (-) False eml1
TU177874 other downstream 113577 11800703 ~ 11804713 (-) False alkal2b
TU177672 other downstream 600049 11303115 ~ 11318241 (-) False ush2a
XR_006253059.1 other downstream 1064582 10847611 ~ 10853708 (-) True opn6b
XR_006253060.1 other downstream 1064582 10848455 ~ 10853708 (-) False opn6b
TU177386 other downstream 1355093 10548205 ~ 10563197 (-) False htr1d
TU178308 other upstream 876179 12817192 ~ 12820668 (-) True G120660
TU178546 other upstream 1255894 13196907 ~ 13200027 (-) False LOC122361883
XR_006253090.1 other upstream 2871907 14812920 ~ 14839813 (-) False myo6b
XR_006253025.1 other upstream 3069813 15010826 ~ 15026415 (-) False ptgr2
TU179062 other upstream 3142805 15083818 ~ 15099924 (-) True crip2

Expression Profile